RNA–Protein interactions for RNA: ENST00000536843.5

CHFR-213, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 2,424 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-213ENST00000536843 POLR1AO95602 1720 aaPredicted RBP20.81■□□□□ 0.92
CHFR-213ENST00000536843 HNRNPMP52272 730 aaKnown RBP eCLIP20.8■□□□□ 0.92
CHFR-213ENST00000536843 NPM2Q86SE8 214 aaKnown RBP20.8■□□□□ 0.92
CHFR-213ENST00000536843 GSE1Q14687 1217 aa20.79■□□□□ 0.92
CHFR-213ENST00000536843 TSPY4P0CV99 314 aa20.78■□□□□ 0.92
CHFR-213ENST00000536843 TSPY10P0CW01 314 aa20.78■□□□□ 0.92
CHFR-213ENST00000536843 MS4A1P11836 297 aa20.78■□□□□ 0.92
CHFR-213ENST00000536843 PDE4AP27815 886 aa20.78■□□□□ 0.92
CHFR-213ENST00000536843 UHRF1BP1LA0JNW5 1464 aa20.78■□□□□ 0.92
CHFR-213ENST00000536843 SHANK2Q9UPX8 1470 aa20.78■□□□□ 0.92
CHFR-213ENST00000536843 BACH2Q9BYV9 841 aa20.78■□□□□ 0.92
CHFR-213ENST00000536843 NUP155O75694 1391 aa20.75■□□□□ 0.91
CHFR-213ENST00000536843 SPATA31E1Q6ZUB1 1445 aa20.75■□□□□ 0.91
CHFR-213ENST00000536843 KIF7Q2M1P5 1343 aa20.74■□□□□ 0.91
CHFR-213ENST00000536843 MBD5Q9P267 1494 aa20.72■□□□□ 0.91
CHFR-213ENST00000536843 KIF15Q9NS87 1388 aa20.72■□□□□ 0.91
CHFR-213ENST00000536843 DDRGK1Q96HY6 314 aa20.71■□□□□ 0.91
CHFR-213ENST00000536843 EIF5BO60841 1220 aaKnown RBP20.7■□□□□ 0.91
CHFR-213ENST00000536843 RSPH6AQ9H0K4 717 aa20.7■□□□□ 0.91
CHFR-213ENST00000536843 ZNF326Q5BKZ1 582 aaKnown RBP20.7■□□□□ 0.9
CHFR-213ENST00000536843 ARHGEF5Q12774 1597 aa20.7■□□□□ 0.9
CHFR-213ENST00000536843 DHX29Q7Z478 1369 aaKnown RBP20.69■□□□□ 0.9
CHFR-213ENST00000536843 SAMD9LQ8IVG5 1584 aa20.68■□□□□ 0.9
CHFR-213ENST00000536843 CDC42BPBQ9Y5S2 1711 aa20.66■□□□□ 0.9
CHFR-213ENST00000536843 CCDC141Q6ZP82 1450 aa20.66■□□□□ 0.9
CHFR-213ENST00000536843 RRP1P56182 461 aaKnown RBP20.66■□□□□ 0.9
CHFR-213ENST00000536843 NFKBIBQ15653 356 aa20.66■□□□□ 0.9
CHFR-213ENST00000536843 PREX2Q70Z35 1606 aa20.66■□□□□ 0.9
CHFR-213ENST00000536843 KDM5DQ9BY66 1539 aa20.65■□□□□ 0.9
CHFR-213ENST00000536843 ZCCHC11Q5TAX3 1644 aaKnown RBP20.65■□□□□ 0.9
CHFR-213ENST00000536843 FRAT1Q92837 279 aaPredicted RBP20.64■□□□□ 0.89
CHFR-213ENST00000536843 RSPH4AQ5TD94 716 aa20.63■□□□□ 0.89
CHFR-213ENST00000536843 FAM43AQ8N2R8 423 aa20.63■□□□□ 0.89
CHFR-213ENST00000536843 EXOC6Q8TAG9 804 aa20.62■□□□□ 0.89
CHFR-213ENST00000536843 USP47Q96K76 1375 aa20.62■□□□□ 0.89
CHFR-213ENST00000536843 PNISRQ8TF01 805 aaKnown RBP20.61■□□□□ 0.89
CHFR-213ENST00000536843 TTC37Q6PGP7 1564 aa20.61■□□□□ 0.89
CHFR-213ENST00000536843 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.6■□□□□ 0.89
CHFR-213ENST00000536843 ARHGAP5Q13017 1502 aa20.59■□□□□ 0.89
CHFR-213ENST00000536843 UHRF1BP1Q6BDS2 1440 aa20.59■□□□□ 0.89
CHFR-213ENST00000536843 SYCP2Q9BX26 1530 aa20.59■□□□□ 0.89
CHFR-213ENST00000536843 KDM2AQ9Y2K7 1162 aa20.58■□□□□ 0.88
CHFR-213ENST00000536843 LRPPRCP42704 1394 aaKnown RBP20.57■□□□□ 0.88
CHFR-213ENST00000536843 POLR3GLQ9BT43 218 aa20.55■□□□□ 0.88
CHFR-213ENST00000536843 BCORL1Q5H9F3 1711 aa20.55■□□□□ 0.88
CHFR-213ENST00000536843 FAM135AQ9P2D6 1515 aa20.55■□□□□ 0.88
CHFR-213ENST00000536843 RALGAPBQ86X10 1494 aa20.54■□□□□ 0.88
CHFR-213ENST00000536843 ARHGEF12Q9NZN5 1544 aa20.54■□□□□ 0.88
CHFR-213ENST00000536843 DCAF11Q8TEB1 546 aa20.54■□□□□ 0.88
CHFR-213ENST00000536843 PKNOX2Q96KN3 472 aa20.54■□□□□ 0.88
CHFR-213ENST00000536843 KDM5CP41229 1560 aa20.54■□□□□ 0.88
CHFR-213ENST00000536843 CARD11Q9BXL7 1154 aa20.53■□□□□ 0.88
CHFR-213ENST00000536843 RCAN3Q9UKA8 241 aa20.53■□□□□ 0.88
CHFR-213ENST00000536843 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.52■□□□□ 0.87
CHFR-213ENST00000536843 MAST1Q9Y2H9 1570 aa20.52■□□□□ 0.87
CHFR-213ENST00000536843 ARID4BQ4LE39 1312 aaPredicted RBP20.51■□□□□ 0.87
CHFR-213ENST00000536843 NPM1P06748 294 aaKnown RBP eCLIP20.5■□□□□ 0.87
CHFR-213ENST00000536843 TMC1Q8TDI8 760 aa20.49■□□□□ 0.87
CHFR-213ENST00000536843 WDR7Q9Y4E6 1490 aa20.49■□□□□ 0.87
CHFR-213ENST00000536843 MYO5CQ9NQX4 1742 aa20.49■□□□□ 0.87
CHFR-213ENST00000536843 PLEKHH2Q8IVE3 1493 aa20.48■□□□□ 0.87
CHFR-213ENST00000536843 CNGB1Q14028 1251 aaPredicted RBP20.47■□□□□ 0.87
CHFR-213ENST00000536843 PLCH2O75038 1416 aa20.46■□□□□ 0.87
CHFR-213ENST00000536843 BRD4O60885 1362 aaPredicted RBP20.46■□□□□ 0.87
CHFR-213ENST00000536843 RIMBP3CA6NJZ7 1639 aa20.45■□□□□ 0.86
CHFR-213ENST00000536843 RIMBP3BA6NNM3 1639 aa20.45■□□□□ 0.86
CHFR-213ENST00000536843 RIMBP3Q9UFD9 1639 aa20.45■□□□□ 0.86
CHFR-213ENST00000536843 ST20-MTHFSA0A0A6YYL1 179 aa20.45■□□□□ 0.86
CHFR-213ENST00000536843 PDE3BQ13370 1112 aa20.45■□□□□ 0.86
CHFR-213ENST00000536843 CCDC144AA2RUR9 1427 aa20.45■□□□□ 0.86
CHFR-213ENST00000536843 EFCAB2Q5VUJ9 269 aa20.45■□□□□ 0.86
CHFR-213ENST00000536843 DAXXQ9UER7 740 aaPredicted RBP20.45■□□□□ 0.86
CHFR-213ENST00000536843 ROCK2O75116 1388 aaKnown RBP20.45■□□□□ 0.86
CHFR-213ENST00000536843 PLA2R1Q13018 1463 aa20.45■□□□□ 0.86
CHFR-213ENST00000536843 UNC13BO14795 1591 aa20.45■□□□□ 0.86
CHFR-213ENST00000536843 ASXL2Q76L83 1435 aa20.44■□□□□ 0.86
CHFR-213ENST00000536843 KTN1Q86UP2 1357 aaKnown RBP20.43■□□□□ 0.86
CHFR-213ENST00000536843 RGL3Q3MIN7 710 aa20.43■□□□□ 0.86
CHFR-213ENST00000536843 PLXNC1O60486 1568 aa20.43■□□□□ 0.86
CHFR-213ENST00000536843 GLIPR1L2Q4G1C9 344 aa20.43■□□□□ 0.86
CHFR-213ENST00000536843 SENP3-EIF4A1A0A087X0R7 540 aa20.42■□□□□ 0.86
CHFR-213ENST00000536843 SLC4A3P48751 1232 aa20.41■□□□□ 0.86
CHFR-213ENST00000536843 DUOX2Q9NRD8 1548 aa20.41■□□□□ 0.86
CHFR-213ENST00000536843 FRAT2O75474 233 aaPredicted RBP20.39■□□□□ 0.86
CHFR-213ENST00000536843 PRAG1Q86YV5 1406 aa20.39■□□□□ 0.85
CHFR-213ENST00000536843 CYB5RLQ6IPT4 315 aa20.38■□□□□ 0.85
CHFR-213ENST00000536843 TRAPPC8Q9Y2L5 1435 aa20.38■□□□□ 0.85
CHFR-213ENST00000536843 MYBBP1AQ9BQG0 1328 aaKnown RBP20.38■□□□□ 0.85
CHFR-213ENST00000536843 IQGAP3Q86VI3 1631 aa20.37■□□□□ 0.85
CHFR-213ENST00000536843 ARAP3Q8WWN8 1544 aa20.37■□□□□ 0.85
CHFR-213ENST00000536843 ERBINQ96RT1 1412 aa20.36■□□□□ 0.85
CHFR-213ENST00000536843 NBPF1Q3BBV0 1214 aa20.36■□□□□ 0.85
CHFR-213ENST00000536843 ABCA9Q8IUA7 1624 aa20.36■□□□□ 0.85
CHFR-213ENST00000536843 ABCC1P33527 1531 aa20.35■□□□□ 0.85
CHFR-213ENST00000536843 RALBP1Q15311 655 aa20.35■□□□□ 0.85
CHFR-213ENST00000536843 A2MP01023 1474 aa20.35■□□□□ 0.85
CHFR-213ENST00000536843 KDM2BQ8NHM5 1336 aa20.34■□□□□ 0.85
CHFR-213ENST00000536843 MAGI2Q86UL8 1455 aa20.33■□□□□ 0.85
CHFR-213ENST00000536843 FAM161AQ3B820 660 aa20.33■□□□□ 0.85
CHFR-213ENST00000536843 SKAP1Q86WV1 359 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms