RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 URB2Q14146 1524 aaKnown RBP7.17□□□□□ -1.26
CPNE3-204ENST00000517862 WNT2BQ93097 391 aa7.16□□□□□ -1.26
CPNE3-204ENST00000517862 FANCD2Q9BXW9 1451 aa7.16□□□□□ -1.26
CPNE3-204ENST00000517862 PCDHGA4Q9Y5G9 962 aa7.15□□□□□ -1.26
CPNE3-204ENST00000517862 SYNJ1O43426 1573 aa7.14□□□□□ -1.27
CPNE3-204ENST00000517862 TREML4Q6UXN2 200 aa7.14□□□□□ -1.27
CPNE3-204ENST00000517862 DIP2BQ9P265 1576 aa7.14□□□□□ -1.27
CPNE3-204ENST00000517862 SNAPC4Q5SXM2 1469 aa7.12□□□□□ -1.27
CPNE3-204ENST00000517862 AMER1Q5JTC6 1135 aaPredicted RBP7.12□□□□□ -1.27
CPNE3-204ENST00000517862 HSPA2P54652 639 aa7.11□□□□□ -1.27
CPNE3-204ENST00000517862 VPS9D1Q9Y2B5 631 aa7.11□□□□□ -1.27
CPNE3-204ENST00000517862 EFCAB3Q8N7B9 438 aa7.1□□□□□ -1.27
CPNE3-204ENST00000517862 PPP4R3BQ5MIZ7 849 aa7.09□□□□□ -1.27
CPNE3-204ENST00000517862 KCNC4Q03721 635 aa7.08□□□□□ -1.28
CPNE3-204ENST00000517862 FKBP8Q14318 412 aa7.08□□□□□ -1.28
CPNE3-204ENST00000517862 SUZ12Q15022 739 aaKnown RBP7.08□□□□□ -1.28
CPNE3-204ENST00000517862 AQRO60306 1485 aaKnown RBP eCLIP7.08□□□□□ -1.28
CPNE3-204ENST00000517862 SLC34A2O95436 690 aa7.07□□□□□ -1.28
CPNE3-204ENST00000517862 KCNK17Q96T54 332 aa7.07□□□□□ -1.28
CPNE3-204ENST00000517862 PTPRMP28827 1452 aa7.06□□□□□ -1.28
CPNE3-204ENST00000517862 MRPL50Q8N5N7 158 aaKnown RBP7.06□□□□□ -1.28
CPNE3-204ENST00000517862 INSM1Q01101 510 aaPredicted RBP7.05□□□□□ -1.28
CPNE3-204ENST00000517862 LCE2AQ5TA79 106 aaPredicted RBP7.05□□□□□ -1.28
CPNE3-204ENST00000517862 CHMP7Q8WUX9 453 aaPredicted RBP7.05□□□□□ -1.28
CPNE3-204ENST00000517862 MAPKBP1O60336 1514 aa7.03□□□□□ -1.28
CPNE3-204ENST00000517862 PRKD2Q9BZL6 878 aa7.03□□□□□ -1.28
CPNE3-204ENST00000517862 PDZRN3Q9UPQ7 1066 aa7.02□□□□□ -1.29
CPNE3-204ENST00000517862 LTBP4Q8N2S1 1624 aa7.01□□□□□ -1.29
CPNE3-204ENST00000517862 DCAF1Q9Y4B6 1507 aa7.01□□□□□ -1.29
CPNE3-204ENST00000517862 COL17A1Q9UMD9 1497 aaPredicted RBP7□□□□□ -1.29
CPNE3-204ENST00000517862 BHMG1C9JSJ3 638 aaPredicted RBP7□□□□□ -1.29
CPNE3-204ENST00000517862 SLC4A5Q9BY07 1137 aa7□□□□□ -1.29
CPNE3-204ENST00000517862 UBAP1LF5GYI3 381 aa6.99□□□□□ -1.29
CPNE3-204ENST00000517862 SOX12O15370 315 aa6.98□□□□□ -1.29
CPNE3-204ENST00000517862 NYAP1Q6ZVC0 841 aa6.98□□□□□ -1.29
CPNE3-204ENST00000517862 V9GY48 417 aaPredicted RBP6.98□□□□□ -1.29
CPNE3-204ENST00000517862 IQSEC2Q5JU85 1478 aa6.98□□□□□ -1.29
CPNE3-204ENST00000517862 HSPA1LP34931 641 aa6.97□□□□□ -1.29
CPNE3-204ENST00000517862 NBPF3Q9H094 633 aa6.97□□□□□ -1.29
CPNE3-204ENST00000517862 C2orf72A6NCS6 295 aa6.96□□□□□ -1.3
CPNE3-204ENST00000517862 MS4A4AQ96JQ5 239 aa6.96□□□□□ -1.3
CPNE3-204ENST00000517862 KIF21BO75037 1637 aa6.96□□□□□ -1.3
CPNE3-204ENST00000517862 PPRC1Q5VV67 1664 aaKnown RBP6.96□□□□□ -1.3
CPNE3-204ENST00000517862 KIF3CO14782 793 aa6.95□□□□□ -1.3
CPNE3-204ENST00000517862 WFS1O76024 890 aa6.95□□□□□ -1.3
CPNE3-204ENST00000517862 SETD1AO15047 1707 aaKnown RBP6.95□□□□□ -1.3
CPNE3-204ENST00000517862 ADAMTSL3P82987 1691 aa6.94□□□□□ -1.3
CPNE3-204ENST00000517862 ANKK1Q8NFD2 765 aa6.94□□□□□ -1.3
CPNE3-204ENST00000517862 PTPRTO14522 1441 aa6.93□□□□□ -1.3
CPNE3-204ENST00000517862 POTECB2RU33 542 aa6.93□□□□□ -1.3
CPNE3-204ENST00000517862 RGS17Q9UGC6 210 aaPredicted RBP6.93□□□□□ -1.3
CPNE3-204ENST00000517862 FAM181BA6NEQ2 426 aa6.92□□□□□ -1.3
CPNE3-204ENST00000517862 WIPF1O43516 503 aa6.92□□□□□ -1.3
CPNE3-204ENST00000517862 CEP170Q5SW79 1584 aa6.91□□□□□ -1.3
CPNE3-204ENST00000517862 TARBP1Q13395 1621 aaKnown RBP6.9□□□□□ -1.3
CPNE3-204ENST00000517862 PKDCCQ504Y2 493 aa6.9□□□□□ -1.3
CPNE3-204ENST00000517862 UPF1Q92900 1129 aaKnown RBP eCLIP6.9□□□□□ -1.3
CPNE3-204ENST00000517862 RBM33Q96EV2 1170 aaKnown RBP6.9□□□□□ -1.3
CPNE3-204ENST00000517862 PEG3Q9GZU2 1588 aa6.9□□□□□ -1.31
CPNE3-204ENST00000517862 KLHL34Q8N239 644 aa6.89□□□□□ -1.31
CPNE3-204ENST00000517862 PHF8Q9UPP1 1060 aa6.89□□□□□ -1.31
CPNE3-204ENST00000517862 TOPBP1Q92547 1522 aa6.88□□□□□ -1.31
CPNE3-204ENST00000517862 MAGI1Q96QZ7 1491 aaPredicted RBP6.88□□□□□ -1.31
CPNE3-204ENST00000517862 YEATS2Q9ULM3 1422 aa6.88□□□□□ -1.31
CPNE3-204ENST00000517862 CFTRP13569 1480 aa6.87□□□□□ -1.31
CPNE3-204ENST00000517862 MYT1Q01538 1121 aa6.87□□□□□ -1.31
CPNE3-204ENST00000517862 STRCQ7RTU9 1775 aa6.87□□□□□ -1.31
CPNE3-204ENST00000517862 ZCCHC6Q5VYS8 1495 aaKnown RBP6.86□□□□□ -1.31
CPNE3-204ENST00000517862 SENP3-EIF4A1A0A087X0R7 540 aa6.86□□□□□ -1.31
CPNE3-204ENST00000517862 POTEAQ6S8J7 498 aa6.86□□□□□ -1.31
CPNE3-204ENST00000517862 MADDQ8WXG6 1647 aa6.86□□□□□ -1.31
CPNE3-204ENST00000517862 TDRD9Q8NDG6 1382 aaKnown RBP6.85□□□□□ -1.31
CPNE3-204ENST00000517862 BCAMP50895 628 aa6.85□□□□□ -1.31
CPNE3-204ENST00000517862 PIP4K2BP78356 416 aa6.85□□□□□ -1.31
CPNE3-204ENST00000517862 TMC2Q8TDI7 906 aa6.85□□□□□ -1.31
CPNE3-204ENST00000517862 ZBED2Q9BTP6 218 aa6.85□□□□□ -1.31
CPNE3-204ENST00000517862 CFAP43Q8NDM7 1665 aa6.84□□□□□ -1.32
CPNE3-204ENST00000517862 ADCY10Q96PN6 1610 aa6.83□□□□□ -1.32
CPNE3-204ENST00000517862 DGAT1O75907 488 aa6.83□□□□□ -1.32
CPNE3-204ENST00000517862 PTPREP23469 700 aa6.83□□□□□ -1.32
CPNE3-204ENST00000517862 PTCD2Q8WV60 388 aaKnown RBP6.83□□□□□ -1.32
CPNE3-204ENST00000517862 BCL2L12Q9HB09 334 aa6.83□□□□□ -1.32
CPNE3-204ENST00000517862 RIMS1Q86UR5 1692 aaKnown RBP6.83□□□□□ -1.32
CPNE3-204ENST00000517862 TEX14Q8IWB6 1497 aa6.82□□□□□ -1.32
CPNE3-204ENST00000517862 SOWAHBA6NEL2 793 aa6.82□□□□□ -1.32
CPNE3-204ENST00000517862 WBP1LQ9NX94 342 aa6.81□□□□□ -1.32
CPNE3-204ENST00000517862 MROH2BQ7Z745 1585 aa6.81□□□□□ -1.32
CPNE3-204ENST00000517862 TBC1D12O60347 775 aa6.8□□□□□ -1.32
CPNE3-204ENST00000517862 GLI2P10070 1586 aa6.8□□□□□ -1.32
CPNE3-204ENST00000517862 BCORL1Q5H9F3 1711 aa6.8□□□□□ -1.32
CPNE3-204ENST00000517862 SHROOM2Q13796 1616 aa6.79□□□□□ -1.32
CPNE3-204ENST00000517862 YY1P25490 414 aa6.79□□□□□ -1.32
CPNE3-204ENST00000517862 NLRP6P59044 892 aa6.79□□□□□ -1.32
CPNE3-204ENST00000517862 PPP1R18Q6NYC8 613 aa6.78□□□□□ -1.32
CPNE3-204ENST00000517862 ABCC8Q09428 1581 aa6.78□□□□□ -1.32
CPNE3-204ENST00000517862 NFX1Q12986 1120 aaKnown RBP6.77□□□□□ -1.33
CPNE3-204ENST00000517862 ZNF454Q8N9F8 522 aa6.77□□□□□ -1.33
CPNE3-204ENST00000517862 ARID4BQ4LE39 1312 aaPredicted RBP6.76□□□□□ -1.33
CPNE3-204ENST00000517862 CIZ1Q9ULV3 898 aaPredicted RBP6.76□□□□□ -1.33
CPNE3-204ENST00000517862 GRIN2BQ13224 1484 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms