RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 CCDC7Q96M83 1385 aa20.88■□□□□ 0.93
CCDC88B-209ENST00000494080 MYBBP1AQ9BQG0 1328 aaKnown RBP20.88■□□□□ 0.93
CCDC88B-209ENST00000494080 HDGFP51858 240 aaKnown RBP20.87■□□□□ 0.93
CCDC88B-209ENST00000494080 SLKQ9H2G2 1235 aaPredicted RBP20.87■□□□□ 0.93
CCDC88B-209ENST00000494080 HFM1A2PYH4 1435 aa20.87■□□□□ 0.93
CCDC88B-209ENST00000494080 HDGFL2Q7Z4V5 671 aaPredicted RBP20.87■□□□□ 0.93
CCDC88B-209ENST00000494080 NBPF8Q3BBV2 869 aa20.86■□□□□ 0.93
CCDC88B-209ENST00000494080 PNNQ9H307 717 aaKnown RBP20.86■□□□□ 0.93
CCDC88B-209ENST00000494080 SPRYD3Q8NCJ5 442 aa20.85■□□□□ 0.93
CCDC88B-209ENST00000494080 CDK13Q14004 1512 aaKnown RBP20.85■□□□□ 0.93
CCDC88B-209ENST00000494080 A0A0G2JS52 829 aa20.84■□□□□ 0.93
CCDC88B-209ENST00000494080 EHBP1L1Q8N3D4 1523 aa20.83■□□□□ 0.92
CCDC88B-209ENST00000494080 EXOC6Q8TAG9 804 aa20.83■□□□□ 0.92
CCDC88B-209ENST00000494080 GZF1Q9H116 711 aaPredicted RBP20.82■□□□□ 0.92
CCDC88B-209ENST00000494080 PCF11O94913 1555 aaKnown RBP20.82■□□□□ 0.92
CCDC88B-209ENST00000494080 GOLGA6L22H0YM25 854 aa20.82■□□□□ 0.92
CCDC88B-209ENST00000494080 NCLP19338 710 aaKnown RBP20.82■□□□□ 0.92
CCDC88B-209ENST00000494080 TROQ12816 1431 aaPredicted RBP20.82■□□□□ 0.92
CCDC88B-209ENST00000494080 GOLGA2Q08379 1002 aa20.81■□□□□ 0.92
CCDC88B-209ENST00000494080 MIA2Q96PC5 1412 aa20.81■□□□□ 0.92
CCDC88B-209ENST00000494080 URB2Q14146 1524 aaKnown RBP20.8■□□□□ 0.92
CCDC88B-209ENST00000494080 SYNJ2O15056 1496 aa20.8■□□□□ 0.92
CCDC88B-209ENST00000494080 LAMC3Q9Y6N6 1575 aa20.79■□□□□ 0.92
CCDC88B-209ENST00000494080 NAIPQ13075 1403 aa20.79■□□□□ 0.92
CCDC88B-209ENST00000494080 VSIG10Q8N0Z9 540 aa20.79■□□□□ 0.92
CCDC88B-209ENST00000494080 EPRSP07814 1512 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-209ENST00000494080 NUTM2FA1L443 756 aa20.79■□□□□ 0.92
CCDC88B-209ENST00000494080 RSPH6AQ9H0K4 717 aa20.77■□□□□ 0.92
CCDC88B-209ENST00000494080 BIVM-ERCC5R4GMW8 1640 aa20.77■□□□□ 0.92
CCDC88B-209ENST00000494080 RRP7AQ9Y3A4 280 aaKnown RBP20.77■□□□□ 0.92
CCDC88B-209ENST00000494080 KIAA0586Q9BVV6 1533 aa20.77■□□□□ 0.92
CCDC88B-209ENST00000494080 NBPF1Q3BBV0 1214 aa20.76■□□□□ 0.91
CCDC88B-209ENST00000494080 TERF2IPQ9NYB0 399 aa20.75■□□□□ 0.91
CCDC88B-209ENST00000494080 WDR97A6NE52 1622 aa20.75■□□□□ 0.91
CCDC88B-209ENST00000494080 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.75■□□□□ 0.91
CCDC88B-209ENST00000494080 ARHGAP5Q13017 1502 aa20.74■□□□□ 0.91
CCDC88B-209ENST00000494080 PLIN1O60240 522 aa20.74■□□□□ 0.91
CCDC88B-209ENST00000494080 HAP1P54257 671 aaPredicted RBP20.74■□□□□ 0.91
CCDC88B-209ENST00000494080 PDE3BQ13370 1112 aa20.74■□□□□ 0.91
CCDC88B-209ENST00000494080 MS4A1P11836 297 aa20.74■□□□□ 0.91
CCDC88B-209ENST00000494080 CLUAP1Q96AJ1 413 aa20.74■□□□□ 0.91
CCDC88B-209ENST00000494080 C9orf84Q5VXU9 1444 aa20.73■□□□□ 0.91
CCDC88B-209ENST00000494080 CNTLNQ9NXG0 1405 aa20.73■□□□□ 0.91
CCDC88B-209ENST00000494080 VGFO15240 615 aaPredicted RBP20.73■□□□□ 0.91
CCDC88B-209ENST00000494080 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.73■□□□□ 0.915e-7■■■■■ 105.2
CCDC88B-209ENST00000494080 DAPK1P53355 1430 aa20.72■□□□□ 0.91
CCDC88B-209ENST00000494080 RRP1P56182 461 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-209ENST00000494080 HECW1Q76N89 1606 aa20.72■□□□□ 0.91
CCDC88B-209ENST00000494080 BRPF3Q9ULD4 1205 aa20.71■□□□□ 0.91
CCDC88B-209ENST00000494080 IQGAP2Q13576 1575 aa20.71■□□□□ 0.91
CCDC88B-209ENST00000494080 ZNF608Q9ULD9 1512 aaPredicted RBP20.7■□□□□ 0.9
CCDC88B-209ENST00000494080 MINK1Q8N4C8 1332 aaPredicted RBP20.69■□□□□ 0.9
CCDC88B-209ENST00000494080 PLB1Q6P1J6 1458 aa20.69■□□□□ 0.9
CCDC88B-209ENST00000494080 SUPT6HQ7KZ85 1726 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-209ENST00000494080 PTMAP06454 111 aaKnown RBP20.68■□□□□ 0.9
CCDC88B-209ENST00000494080 DNTTIP2Q5QJE6 756 aaKnown RBP20.68■□□□□ 0.9
CCDC88B-209ENST00000494080 APAF1O14727 1248 aa20.68■□□□□ 0.9
CCDC88B-209ENST00000494080 KIAA1107Q9UPP5 1409 aa20.68■□□□□ 0.9
CCDC88B-209ENST00000494080 GOLGA6L3A6NEY3 463 aa20.67■□□□□ 0.9
CCDC88B-209ENST00000494080 TMEM132EQ6IEE7 984 aa20.67■□□□□ 0.9
CCDC88B-209ENST00000494080 CFAP70Q5T0N1 1121 aa20.67■□□□□ 0.9
CCDC88B-209ENST00000494080 HSP90AB1P08238 724 aaKnown RBP20.66■□□□□ 0.9
CCDC88B-209ENST00000494080 FAM69CQ0P6D2 419 aa20.66■□□□□ 0.9
CCDC88B-209ENST00000494080 NFKBIBQ15653 356 aa20.66■□□□□ 0.9
CCDC88B-209ENST00000494080 HSP90AA2PQ14568 343 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-209ENST00000494080 CUL7Q14999 1698 aa20.65■□□□□ 0.9
CCDC88B-209ENST00000494080 CCDC184Q52MB2 194 aa20.65■□□□□ 0.9
CCDC88B-209ENST00000494080 BCL2L13Q9BXK5 485 aa20.65■□□□□ 0.9
CCDC88B-209ENST00000494080 HSCBQ8IWL3 235 aa20.65■□□□□ 0.9
CCDC88B-209ENST00000494080 ITPRIPQ8IWB1 547 aa20.63■□□□□ 0.89
CCDC88B-209ENST00000494080 SMC4Q9NTJ3 1288 aa20.63■□□□□ 0.89
CCDC88B-209ENST00000494080 EVC2Q86UK5 1308 aa20.63■□□□□ 0.89
CCDC88B-209ENST00000494080 CENPJQ9HC77 1338 aaPredicted RBP20.63■□□□□ 0.89
CCDC88B-209ENST00000494080 MAP3K1Q13233 1512 aa20.62■□□□□ 0.89
CCDC88B-209ENST00000494080 RTF1Q92541 710 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-209ENST00000494080 CHMP4BQ9H444 224 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-209ENST00000494080 FAM161AQ3B820 660 aa20.61■□□□□ 0.89
CCDC88B-209ENST00000494080 CRBNQ96SW2 442 aa20.61■□□□□ 0.89
CCDC88B-209ENST00000494080 MSNP26038 577 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-209ENST00000494080 APBB1O00213 710 aa20.61■□□□□ 0.89
CCDC88B-209ENST00000494080 PKNOX2Q96KN3 472 aa20.61■□□□□ 0.89
CCDC88B-209ENST00000494080 CGNL1Q0VF96 1302 aa20.6■□□□□ 0.89
CCDC88B-209ENST00000494080 ARHGEF11O15085 1522 aa20.6■□□□□ 0.89
CCDC88B-209ENST00000494080 IPO8O15397 1037 aaKnown RBP20.6■□□□□ 0.89
CCDC88B-209ENST00000494080 GRIN2AQ12879 1464 aa20.6■□□□□ 0.89
CCDC88B-209ENST00000494080 SCAPERQ9BY12 1400 aa20.59■□□□□ 0.89
CCDC88B-209ENST00000494080 EID1Q9Y6B2 187 aa20.58■□□□□ 0.89
CCDC88B-209ENST00000494080 ABCC5O15440 1437 aa20.58■□□□□ 0.88
CCDC88B-209ENST00000494080 NGDNQ8NEJ9 315 aaKnown RBP20.58■□□□□ 0.88
CCDC88B-209ENST00000494080 ARID3AQ99856 593 aa20.58■□□□□ 0.88
CCDC88B-209ENST00000494080 C11orf95C9JLR9 678 aaPredicted RBP20.57■□□□□ 0.88
CCDC88B-209ENST00000494080 ELL2O00472 640 aaPredicted RBP20.55■□□□□ 0.88
CCDC88B-209ENST00000494080 CASC1Q6TDU7 716 aa20.55■□□□□ 0.88
CCDC88B-209ENST00000494080 CENPQQ7L2Z9 268 aaPredicted RBP20.55■□□□□ 0.88
CCDC88B-209ENST00000494080 AKNAQ7Z591 1439 aa20.55■□□□□ 0.88
CCDC88B-209ENST00000494080 ROCK1Q13464 1354 aa20.55■□□□□ 0.88
CCDC88B-209ENST00000494080 RWDD1Q9H446 243 aaPredicted RBP20.54■□□□□ 0.88
CCDC88B-209ENST00000494080 PTPN23Q9H3S7 1636 aa20.54■□□□□ 0.88
CCDC88B-209ENST00000494080 TPRNQ4KMQ1 711 aa20.54■□□□□ 0.88
CCDC88B-209ENST00000494080 STAC3Q96MF2 364 aa20.54■□□□□ 0.88
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