RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-208ENST00000489247 KHSRPQ92945 711 aaKnown RBP eCLIP8.94□□□□□ -0.98
ATG4A-208ENST00000489247 BCANQ96GW7 911 aa8.93□□□□□ -0.98
ATG4A-208ENST00000489247 AXIN2Q9Y2T1 843 aa8.93□□□□□ -0.98
ATG4A-208ENST00000489247 SOGA1O94964 1423 aa8.93□□□□□ -0.98
ATG4A-208ENST00000489247 PRDM2Q13029 1718 aa8.91□□□□□ -0.98
ATG4A-208ENST00000489247 CUX1P39880 1505 aa8.9□□□□□ -0.98
ATG4A-208ENST00000489247 EMILIN3Q9NT22 766 aa8.9□□□□□ -0.98
ATG4A-208ENST00000489247 WDR70Q9NW82 654 aa8.9□□□□□ -0.98
ATG4A-208ENST00000489247 ADGRD1Q6QNK2 874 aa8.89□□□□□ -0.99
ATG4A-208ENST00000489247 UPF1Q92900 1129 aaKnown RBP eCLIP8.89□□□□□ -0.99
ATG4A-208ENST00000489247 TNIKQ9UKE5 1360 aa8.88□□□□□ -0.99
ATG4A-208ENST00000489247 RUSC2Q8N2Y8 1516 aa8.87□□□□□ -0.99
ATG4A-208ENST00000489247 CAMK2BQ13554 666 aa8.87□□□□□ -0.99
ATG4A-208ENST00000489247 FAM9AQ8IZU1 332 aaPredicted RBP8.87□□□□□ -0.99
ATG4A-208ENST00000489247 LAMC3Q9Y6N6 1575 aa8.86□□□□□ -0.99
ATG4A-208ENST00000489247 SLC34A2O95436 690 aa8.86□□□□□ -0.99
ATG4A-208ENST00000489247 E2F4Q16254 413 aa8.86□□□□□ -0.99
ATG4A-208ENST00000489247 Q6ZNB5 142 aa8.86□□□□□ -0.99
ATG4A-208ENST00000489247 KIF21BO75037 1637 aa8.86□□□□□ -0.99
ATG4A-208ENST00000489247 GOLGA3Q08378 1498 aa8.85□□□□□ -0.99
ATG4A-208ENST00000489247 CEP164Q9UPV0 1460 aa8.85□□□□□ -0.99
ATG4A-208ENST00000489247 OXER1Q8TDS5 423 aa8.85□□□□□ -0.99
ATG4A-208ENST00000489247 PCDHGA4Q9Y5G9 962 aa8.85□□□□□ -0.99
ATG4A-208ENST00000489247 FANCD2Q9BXW9 1451 aa8.84□□□□□ -0.99
ATG4A-208ENST00000489247 IFFO2Q5TF58 517 aa8.84□□□□□ -0.99
ATG4A-208ENST00000489247 KCNV2Q8TDN2 545 aa8.84□□□□□ -0.99
ATG4A-208ENST00000489247 PTCD2Q8WV60 388 aaKnown RBP8.84□□□□□ -0.99
ATG4A-208ENST00000489247 KCTD12Q96CX2 325 aaKnown RBP8.84□□□□□ -0.99
ATG4A-208ENST00000489247 PRXQ9BXM0 1461 aa8.83□□□□□ -1
ATG4A-208ENST00000489247 A0A0G2JS52 829 aa8.82□□□□□ -1
ATG4A-208ENST00000489247 DPYSL4O14531 572 aa8.82□□□□□ -1
ATG4A-208ENST00000489247 KIF27Q86VH2 1401 aa8.81□□□□□ -1
ATG4A-208ENST00000489247 ERICH3Q5RHP9 1530 aa8.81□□□□□ -1
ATG4A-208ENST00000489247 NUDT7P0C024 238 aa8.8□□□□□ -1
ATG4A-208ENST00000489247 DNMBPQ6XZF7 1577 aa8.8□□□□□ -1
ATG4A-208ENST00000489247 PDS5BQ9NTI5 1447 aa8.8□□□□□ -1
ATG4A-208ENST00000489247 HRO43593 1189 aa8.79□□□□□ -1
ATG4A-208ENST00000489247 LHX6Q9UPM6 363 aa8.79□□□□□ -1
ATG4A-208ENST00000489247 CEP162Q5TB80 1403 aa8.79□□□□□ -1
ATG4A-208ENST00000489247 KDM4FA0A1W2PPD8 638 aa8.78□□□□□ -1
ATG4A-208ENST00000489247 ARHGAP33O14559 1287 aa8.78□□□□□ -1
ATG4A-208ENST00000489247 PRKCSHP14314 528 aaPredicted RBP8.78□□□□□ -1
ATG4A-208ENST00000489247 MAP3K9P80192 1104 aa8.78□□□□□ -1
ATG4A-208ENST00000489247 FGD5Q6ZNL6 1462 aa8.77□□□□□ -1
ATG4A-208ENST00000489247 NESP48681 1621 aa8.77□□□□□ -1.01
ATG4A-208ENST00000489247 TOPBP1Q92547 1522 aa8.77□□□□□ -1.01
ATG4A-208ENST00000489247 TK2O00142 265 aa8.77□□□□□ -1.01
ATG4A-208ENST00000489247 ABCA10Q8WWZ4 1543 aa8.76□□□□□ -1.01
ATG4A-208ENST00000489247 TBC1D12O60347 775 aa8.76□□□□□ -1.01
ATG4A-208ENST00000489247 EVI5O60447 810 aa8.76□□□□□ -1.01
ATG4A-208ENST00000489247 RAPGEF2Q9Y4G8 1499 aa8.76□□□□□ -1.01
ATG4A-208ENST00000489247 ARIH1Q9Y4X5 557 aaPredicted RBP8.75□□□□□ -1.01
ATG4A-208ENST00000489247 IGF1RP08069 1367 aa8.74□□□□□ -1.01
ATG4A-208ENST00000489247 NBR1Q14596 966 aa8.74□□□□□ -1.01
ATG4A-208ENST00000489247 ARHGEF1Q92888 912 aaKnown RBP8.74□□□□□ -1.01
ATG4A-208ENST00000489247 POLA1P09884 1462 aaPredicted RBP8.74□□□□□ -1.01
ATG4A-208ENST00000489247 URB2Q14146 1524 aaKnown RBP8.74□□□□□ -1.01
ATG4A-208ENST00000489247 CUX2O14529 1486 aa8.73□□□□□ -1.01
ATG4A-208ENST00000489247 PTPN5P54829 565 aa8.73□□□□□ -1.01
ATG4A-208ENST00000489247 P3H3Q8IVL6 736 aa8.73□□□□□ -1.01
ATG4A-208ENST00000489247 TRIM26Q12899 539 aaPredicted RBP8.72□□□□□ -1.01
ATG4A-208ENST00000489247 PDIA6Q15084 440 aa8.72□□□□□ -1.01
ATG4A-208ENST00000489247 STAC3Q96MF2 364 aa8.71□□□□□ -1.02
ATG4A-208ENST00000489247 ANO8Q9HCE9 1232 aaPredicted RBP8.71□□□□□ -1.02
ATG4A-208ENST00000489247 TPRNQ4KMQ1 711 aa8.7□□□□□ -1.02
ATG4A-208ENST00000489247 DMRTA1Q5VZB9 504 aa8.7□□□□□ -1.02
ATG4A-208ENST00000489247 CLIP1P30622 1438 aa8.7□□□□□ -1.02
ATG4A-208ENST00000489247 UBTFP17480 764 aaKnown RBP8.69□□□□□ -1.02
ATG4A-208ENST00000489247 WDR97A6NE52 1622 aa8.67□□□□□ -1.02
ATG4A-208ENST00000489247 SPDYE16A6NNV3 312 aaPredicted RBP8.67□□□□□ -1.02
ATG4A-208ENST00000489247 SEMA3EO15041 775 aa8.67□□□□□ -1.02
ATG4A-208ENST00000489247 DDX12PQ92771 950 aa8.67□□□□□ -1.02
ATG4A-208ENST00000489247 MRC2Q9UBG0 1479 aa8.67□□□□□ -1.02
ATG4A-208ENST00000489247 RAD54L2Q9Y4B4 1467 aa8.66□□□□□ -1.02
ATG4A-208ENST00000489247 VPS8Q8N3P4 1428 aa8.66□□□□□ -1.02
ATG4A-208ENST00000489247 CARMIL1Q5VZK9 1371 aa8.66□□□□□ -1.02
ATG4A-208ENST00000489247 LCE2BO14633 110 aa8.66□□□□□ -1.02
ATG4A-208ENST00000489247 MLLT3P42568 568 aaPredicted RBP8.66□□□□□ -1.02
ATG4A-208ENST00000489247 PSEN2P49810 448 aa8.66□□□□□ -1.02
ATG4A-208ENST00000489247 ZNF454Q8N9F8 522 aa8.65□□□□□ -1.02
ATG4A-208ENST00000489247 PCGF6Q9BYE7 350 aa8.65□□□□□ -1.02
ATG4A-208ENST00000489247 ABCA5Q8WWZ7 1642 aa8.65□□□□□ -1.03
ATG4A-208ENST00000489247 PSDA5PKW4 1024 aaPredicted RBP8.64□□□□□ -1.03
ATG4A-208ENST00000489247 FOSBP53539 338 aa8.64□□□□□ -1.03
ATG4A-208ENST00000489247 PCDHGA10Q9Y5H3 936 aa8.64□□□□□ -1.03
ATG4A-208ENST00000489247 WDR62O43379 1518 aa8.64□□□□□ -1.03
ATG4A-208ENST00000489247 CUL7Q14999 1698 aa8.63□□□□□ -1.03
ATG4A-208ENST00000489247 KIF21AQ7Z4S6 1674 aa8.63□□□□□ -1.03
ATG4A-208ENST00000489247 TARBP1Q13395 1621 aaKnown RBP8.63□□□□□ -1.03
ATG4A-208ENST00000489247 GRXCR2A6NFK2 248 aa8.63□□□□□ -1.03
ATG4A-208ENST00000489247 PRIM1P49642 420 aaKnown RBP8.63□□□□□ -1.03
ATG4A-208ENST00000489247 JPH4Q96JJ6 628 aa8.62□□□□□ -1.03
ATG4A-208ENST00000489247 TRAF7Q6Q0C0 670 aa8.61□□□□□ -1.03
ATG4A-208ENST00000489247 ARAP1Q96P48 1450 aa8.61□□□□□ -1.03
ATG4A-208ENST00000489247 GAPVD1Q14C86 1478 aa8.6□□□□□ -1.03
ATG4A-208ENST00000489247 IFT140Q96RY7 1462 aa8.6□□□□□ -1.03
ATG4A-208ENST00000489247 TESPA1A2RU30 521 aaPredicted RBP8.6□□□□□ -1.03
ATG4A-208ENST00000489247 PHF14O94880 888 aa8.6□□□□□ -1.03
ATG4A-208ENST00000489247 ADAM33Q9BZ11 813 aa8.6□□□□□ -1.03
ATG4A-208ENST00000489247 ARHGAP35Q9NRY4 1499 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms