RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 PPP4R3BQ5MIZ7 849 aa10.43□□□□□ -0.74
SF3B1-209ENST00000479532 Q6ZNB5 142 aa10.42□□□□□ -0.74
SF3B1-209ENST00000479532 PAXIP1Q6ZW49 1069 aaPredicted RBP10.42□□□□□ -0.74
SF3B1-209ENST00000479532 RNF25Q96BH1 459 aaPredicted RBP10.42□□□□□ -0.74
SF3B1-209ENST00000479532 SYNJ1O43426 1573 aa10.41□□□□□ -0.74
SF3B1-209ENST00000479532 A0A0G2JS52 829 aa10.41□□□□□ -0.74
SF3B1-209ENST00000479532 CHGAP10645 457 aaKnown RBP10.41□□□□□ -0.74
SF3B1-209ENST00000479532 FGD5Q6ZNL6 1462 aa10.41□□□□□ -0.74
SF3B1-209ENST00000479532 IFT140Q96RY7 1462 aa10.41□□□□□ -0.74
SF3B1-209ENST00000479532 BCL11BQ9C0K0 894 aaPredicted RBP10.4□□□□□ -0.74
SF3B1-209ENST00000479532 TAOK2Q9UL54 1235 aa10.4□□□□□ -0.74
SF3B1-209ENST00000479532 POLA1P09884 1462 aaPredicted RBP10.4□□□□□ -0.74
SF3B1-209ENST00000479532 CFAP44Q96MT7 982 aa10.39□□□□□ -0.75
SF3B1-209ENST00000479532 KCNK17Q96T54 332 aa10.38□□□□□ -0.75
SF3B1-209ENST00000479532 STK24Q9Y6E0 443 aa10.38□□□□□ -0.75
SF3B1-209ENST00000479532 SOGA1O94964 1423 aa10.38□□□□□ -0.75
SF3B1-209ENST00000479532 GOLGA8CPA6NN73 597 aa10.37□□□□□ -0.75
SF3B1-209ENST00000479532 MFRPQ9BY79 579 aa10.36□□□□□ -0.75
SF3B1-209ENST00000479532 WDR97A6NE52 1622 aa10.35□□□□□ -0.75
SF3B1-209ENST00000479532 TARBP1Q13395 1621 aaKnown RBP10.35□□□□□ -0.75
SF3B1-209ENST00000479532 VSIG10Q8N0Z9 540 aa10.34□□□□□ -0.75
SF3B1-209ENST00000479532 VPS9D1Q9Y2B5 631 aa10.34□□□□□ -0.75
SF3B1-209ENST00000479532 RAD54L2Q9Y4B4 1467 aa10.34□□□□□ -0.75
SF3B1-209ENST00000479532 KDM4FA0A1W2PPD8 638 aa10.33□□□□□ -0.76
SF3B1-209ENST00000479532 HS6ST3Q8IZP7 471 aa10.33□□□□□ -0.76
SF3B1-209ENST00000479532 SPRYD3Q8NCJ5 442 aa10.33□□□□□ -0.76
SF3B1-209ENST00000479532 PTCD2Q8WV60 388 aaKnown RBP10.33□□□□□ -0.76
SF3B1-209ENST00000479532 TBC1D12O60347 775 aa10.32□□□□□ -0.76
SF3B1-209ENST00000479532 THSD4Q6ZMP0 1018 aa10.32□□□□□ -0.76
SF3B1-209ENST00000479532 ABCA10Q8WWZ4 1543 aa10.32□□□□□ -0.76
SF3B1-209ENST00000479532 EIF4G3O43432 1585 aaKnown RBP10.31□□□□□ -0.76
SF3B1-209ENST00000479532 ZNF608Q9ULD9 1512 aaPredicted RBP10.29□□□□□ -0.76
SF3B1-209ENST00000479532 WNT2BQ93097 391 aa10.29□□□□□ -0.76
SF3B1-209ENST00000479532 ABCA5Q8WWZ7 1642 aa10.27□□□□□ -0.77
SF3B1-209ENST00000479532 STK25O00506 426 aa10.27□□□□□ -0.77
SF3B1-209ENST00000479532 PBRM1Q86U86 1689 aa10.27□□□□□ -0.77
SF3B1-209ENST00000479532 TDRD9Q8NDG6 1382 aaKnown RBP10.26□□□□□ -0.77
SF3B1-209ENST00000479532 AQRO60306 1485 aaKnown RBP eCLIP10.26□□□□□ -0.77
SF3B1-209ENST00000479532 GAPVD1Q14C86 1478 aa10.26□□□□□ -0.77
SF3B1-209ENST00000479532 MRPL50Q8N5N7 158 aaKnown RBP10.26□□□□□ -0.77
SF3B1-209ENST00000479532 KDM2AQ9Y2K7 1162 aa10.26□□□□□ -0.77
SF3B1-209ENST00000479532 KIF27Q86VH2 1401 aa10.25□□□□□ -0.77
SF3B1-209ENST00000479532 GRIN2BQ13224 1484 aa10.25□□□□□ -0.77
SF3B1-209ENST00000479532 TSHZ2Q9NRE2 1034 aa10.24□□□□□ -0.77
SF3B1-209ENST00000479532 PLPP6Q8IY26 295 aa10.23□□□□□ -0.77
SF3B1-209ENST00000479532 DNAJC5Q9H3Z4 198 aa10.23□□□□□ -0.77
SF3B1-209ENST00000479532 SLC4A5Q9BY07 1137 aa10.22□□□□□ -0.77
SF3B1-209ENST00000479532 MAGI1Q96QZ7 1491 aaPredicted RBP10.22□□□□□ -0.77
SF3B1-209ENST00000479532 ERICH3Q5RHP9 1530 aa10.22□□□□□ -0.77
SF3B1-209ENST00000479532 SNAPC4Q5SXM2 1469 aa10.2□□□□□ -0.78
SF3B1-209ENST00000479532 ZNF454Q8N9F8 522 aa10.2□□□□□ -0.78
SF3B1-209ENST00000479532 BCANQ96GW7 911 aa10.2□□□□□ -0.78
SF3B1-209ENST00000479532 CUL7Q14999 1698 aa10.19□□□□□ -0.78
SF3B1-209ENST00000479532 BHMG1C9JSJ3 638 aaPredicted RBP10.19□□□□□ -0.78
SF3B1-209ENST00000479532 NKX1-1Q15270 411 aaPredicted RBP10.19□□□□□ -0.78
SF3B1-209ENST00000479532 EEA1Q15075 1411 aa10.18□□□□□ -0.78
SF3B1-209ENST00000479532 FOXK1P85037 733 aa10.18□□□□□ -0.78
SF3B1-209ENST00000479532 LAPTM4AQ15012 233 aa10.18□□□□□ -0.78
SF3B1-209ENST00000479532 PTPREP23469 700 aa10.17□□□□□ -0.78
SF3B1-209ENST00000479532 ADAMTS12P58397 1594 aa10.17□□□□□ -0.78
SF3B1-209ENST00000479532 CHD1O14646 1710 aa10.16□□□□□ -0.78
SF3B1-209ENST00000479532 TRAF7Q6Q0C0 670 aa10.16□□□□□ -0.78
SF3B1-209ENST00000479532 NBPF3Q9H094 633 aa10.16□□□□□ -0.78
SF3B1-209ENST00000479532 BCL2L12Q9HB09 334 aa10.16□□□□□ -0.78
SF3B1-209ENST00000479532 SYNJ2O15056 1496 aa10.16□□□□□ -0.78
SF3B1-209ENST00000479532 FHAD1B1AJZ9 1412 aa10.16□□□□□ -0.78
SF3B1-209ENST00000479532 CHMP7Q8WUX9 453 aaPredicted RBP10.15□□□□□ -0.78
SF3B1-209ENST00000479532 PPP1R37O75864 691 aa10.14□□□□□ -0.79
SF3B1-209ENST00000479532 IGF1RP08069 1367 aa10.14□□□□□ -0.79
SF3B1-209ENST00000479532 ITGBL1O95965 494 aaPredicted RBP10.13□□□□□ -0.79
SF3B1-209ENST00000479532 RUSC2Q8N2Y8 1516 aa10.12□□□□□ -0.79
SF3B1-209ENST00000479532 GTPBP6O43824 516 aaPredicted RBP10.12□□□□□ -0.79
SF3B1-209ENST00000479532 ZBED2Q9BTP6 218 aa10.12□□□□□ -0.79
SF3B1-209ENST00000479532 GPHNQ9NQX3 736 aaPredicted RBP10.12□□□□□ -0.79
SF3B1-209ENST00000479532 GFRA3O60609 400 aa10.11□□□□□ -0.79
SF3B1-209ENST00000479532 CARMIL1Q5VZK9 1371 aa10.11□□□□□ -0.79
SF3B1-209ENST00000479532 GRIN2AQ12879 1464 aa10.1□□□□□ -0.79
SF3B1-209ENST00000479532 DSG2Q14126 1118 aa10.1□□□□□ -0.79
SF3B1-209ENST00000479532 ANKK1Q8NFD2 765 aa10.1□□□□□ -0.79
SF3B1-209ENST00000479532 FAM9AQ8IZU1 332 aaPredicted RBP10.09□□□□□ -0.79
SF3B1-209ENST00000479532 RAPGEF2Q9Y4G8 1499 aa10.09□□□□□ -0.79
SF3B1-209ENST00000479532 KCNC4Q03721 635 aa10.08□□□□□ -0.8
SF3B1-209ENST00000479532 UPF1Q92900 1129 aaKnown RBP eCLIP10.08□□□□□ -0.8
SF3B1-209ENST00000479532 PRXQ9BXM0 1461 aa10.05□□□□□ -0.8
SF3B1-209ENST00000479532 KIF21BO75037 1637 aa10.05□□□□□ -0.8
SF3B1-209ENST00000479532 FOSBP53539 338 aa10.05□□□□□ -0.8
SF3B1-209ENST00000479532 CEP170Q5SW79 1584 aa10.04□□□□□ -0.8
SF3B1-209ENST00000479532 NUP160Q12769 1436 aa10.03□□□□□ -0.8
SF3B1-209ENST00000479532 NYAP1Q6ZVC0 841 aa10.03□□□□□ -0.8
SF3B1-209ENST00000479532 OXER1Q8TDS5 423 aa10.03□□□□□ -0.8
SF3B1-209ENST00000479532 RYDENQ9NUL5 291 aaKnown RBP10.03□□□□□ -0.8
SF3B1-209ENST00000479532 CTTNBP2Q8WZ74 1663 aa10.02□□□□□ -0.8
SF3B1-209ENST00000479532 CLASP1Q7Z460 1538 aa10.02□□□□□ -0.81
SF3B1-209ENST00000479532 LCE2BO14633 110 aa10.01□□□□□ -0.81
SF3B1-209ENST00000479532 BCAMP50895 628 aa10.01□□□□□ -0.81
SF3B1-209ENST00000479532 ZNF787Q6DD87 383 aa10.01□□□□□ -0.81
SF3B1-209ENST00000479532 ZDHHC16Q969W1 377 aa10.01□□□□□ -0.81
SF3B1-209ENST00000479532 GOLGA3Q08378 1498 aa10□□□□□ -0.81
SF3B1-209ENST00000479532 KIAA0586Q9BVV6 1533 aa10□□□□□ -0.81
SF3B1-209ENST00000479532 IQGAP2Q13576 1575 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms