RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	ARMCX6	Q7L4S7	300 aa		4.59	□□□□□ -1.67
UBR3-208	ENST00000474426	OTUD6B	Q8N6M0	293 aa		4.59	□□□□□ -1.67
UBR3-208	ENST00000474426	CEP120	Q8N960	986 aa		4.59	□□□□□ -1.67
UBR3-208	ENST00000474426	ARHGEF1	Q92888	912 aa	Known RBP	4.59	□□□□□ -1.67
UBR3-208	ENST00000474426	CCER2	I3L3R5	266 aa		4.59	□□□□□ -1.68
UBR3-208	ENST00000474426	RBM26	Q5T8P6	1007 aa	Known RBP	4.58	□□□□□ -1.68
UBR3-208	ENST00000474426	KAT6B	Q8WYB5	2073 aa		4.58	□□□□□ -1.68
UBR3-208	ENST00000474426	IGF1R	P08069	1367 aa		4.58	□□□□□ -1.68
UBR3-208	ENST00000474426	POLD1	P28340	1107 aa		4.58	□□□□□ -1.68
UBR3-208	ENST00000474426	NGEF	Q8N5V2	710 aa		4.58	□□□□□ -1.68
UBR3-208	ENST00000474426	MICAL1	Q8TDZ2	1067 aa		4.58	□□□□□ -1.68
UBR3-208	ENST00000474426	TSPAN18	Q96SJ8	248 aa		4.58	□□□□□ -1.68
UBR3-208	ENST00000474426	SUPT16H	Q9Y5B9	1047 aa	Known RBP	4.58	□□□□□ -1.68
UBR3-208	ENST00000474426	RHBDL3	P58872	404 aa		4.57	□□□□□ -1.68
UBR3-208	ENST00000474426	BARGIN	Q6ZT62	677 aa		4.57	□□□□□ -1.68
UBR3-208	ENST00000474426	CCER1	Q8TC90	406 aa	Predicted RBP	4.57	□□□□□ -1.68
UBR3-208	ENST00000474426	PCGF6	Q9BYE7	350 aa		4.57	□□□□□ -1.68
UBR3-208	ENST00000474426	CASC1	Q6TDU7	716 aa		4.57	□□□□□ -1.68
UBR3-208	ENST00000474426	BORCS6	Q96GS4	357 aa		4.57	□□□□□ -1.68
UBR3-208	ENST00000474426	FANCI	Q9NVI1	1328 aa		4.57	□□□□□ -1.68
UBR3-208	ENST00000474426	PEX14	O75381	377 aa		4.56	□□□□□ -1.68
UBR3-208	ENST00000474426	FBXW7	Q969H0	707 aa		4.56	□□□□□ -1.68
UBR3-208	ENST00000474426	ARID4A	P29374	1257 aa	Predicted RBP	4.56	□□□□□ -1.68
UBR3-208	ENST00000474426	KRBA2	Q6ZNG9	492 aa		4.56	□□□□□ -1.68
UBR3-208	ENST00000474426	RAB11FIP3	O75154	756 aa		4.56	□□□□□ -1.68
UBR3-208	ENST00000474426	NBPF9	Q3BBW0	867 aa		4.56	□□□□□ -1.68
UBR3-208	ENST00000474426	GORAB	Q5T7V8	394 aa		4.56	□□□□□ -1.68
UBR3-208	ENST00000474426	DDX46	Q7L014	1031 aa	Known RBP	4.56	□□□□□ -1.68
UBR3-208	ENST00000474426	MAP4K4	O95819	1239 aa	Predicted RBP	4.56	□□□□□ -1.68
UBR3-208	ENST00000474426	SCP2	P22307	547 aa		4.56	□□□□□ -1.68
UBR3-208	ENST00000474426	CCDC184	Q52MB2	194 aa		4.56	□□□□□ -1.68
UBR3-208	ENST00000474426	CC2D1B	Q5T0F9	858 aa	Known RBP	4.56	□□□□□ -1.68
UBR3-208	ENST00000474426	ATL2	Q8NHH9	583 aa		4.55	□□□□□ -1.68
UBR3-208	ENST00000474426	ZC3H15	Q8WU90	426 aa	Known RBP	4.55	□□□□□ -1.68
UBR3-208	ENST00000474426	ANP32B	Q92688	251 aa	Known RBP	4.55	□□□□□ -1.68
UBR3-208	ENST00000474426	VASP	P50552	380 aa	Predicted RBP	4.55	□□□□□ -1.68
UBR3-208	ENST00000474426	CLUAP1	Q96AJ1	413 aa		4.55	□□□□□ -1.68
UBR3-208	ENST00000474426	TRIM44	Q96DX7	344 aa	Predicted RBP	4.55	□□□□□ -1.68
UBR3-208	ENST00000474426	DCAF1	Q9Y4B6	1507 aa		4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	GOLGA6C	A6NDK9	693 aa		4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	GOLGA6B	A6NDN3	693 aa		4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	GOLGA6D	P0CG33	693 aa		4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	ERCC3	P19447	782 aa		4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	LONRF3	Q496Y0	759 aa		4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	HIRIP3	Q9BW71	556 aa	Predicted RBP	4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	GOLGA6A	Q9NYA3	693 aa		4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	ARIH1	Q9Y4X5	557 aa	Predicted RBP	4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	ANKRD62	A6NC57	917 aa		4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	TCERG1	O14776	1098 aa	Known RBP	4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	DHX16	O60231	1041 aa	Known RBP	4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	PRR29	P0C7W0	189 aa		4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	CLEC4G	Q6UXB4	293 aa		4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	AMOTL2	Q9Y2J4	779 aa		4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	EPB41L2	O43491	1005 aa	Known RBP	4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	PAX3	P23760	479 aa		4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	GET4	Q7L5D6	327 aa	Predicted RBP	4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	PNMA2	Q9UL42	364 aa		4.54	□□□□□ -1.68
UBR3-208	ENST00000474426	ZNF500	O60304	480 aa	Predicted RBP	4.53	□□□□□ -1.68
UBR3-208	ENST00000474426	MKL1	Q969V6	931 aa		4.53	□□□□□ -1.68
UBR3-208	ENST00000474426	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	4.53	□□□□□ -1.68	7e-11	■■■■■ 260.8
UBR3-208	ENST00000474426	ERBB3	P21860	1342 aa		4.53	□□□□□ -1.68
UBR3-208	ENST00000474426	ZNF280D	Q6N043	979 aa		4.53	□□□□□ -1.68
UBR3-208	ENST00000474426	ANKRD23	Q86SG2	305 aa		4.53	□□□□□ -1.68
UBR3-208	ENST00000474426	FOSB	P53539	338 aa		4.53	□□□□□ -1.68
UBR3-208	ENST00000474426	HSP90AB3P	Q58FF7	597 aa		4.53	□□□□□ -1.68
UBR3-208	ENST00000474426	GIMAP6	Q6P9H5	292 aa		4.53	□□□□□ -1.68
UBR3-208	ENST00000474426	ZNF513	Q8N8E2	541 aa	Predicted RBP	4.53	□□□□□ -1.68
UBR3-208	ENST00000474426	MCCD1	P59942	119 aa	Predicted RBP	4.52	□□□□□ -1.69
UBR3-208	ENST00000474426	CACTIN-AS1	Q8N1I8	211 aa		4.52	□□□□□ -1.69
UBR3-208	ENST00000474426	MTA1	Q13330	715 aa		4.52	□□□□□ -1.69
UBR3-208	ENST00000474426	NBPF10	Q6P3W6	841 aa	Known RBP	4.52	□□□□□ -1.69
UBR3-208	ENST00000474426	KIAA1522	Q9P206	1035 aa	Predicted RBP	4.52	□□□□□ -1.69
UBR3-208	ENST00000474426	RPGRIP1L	Q68CZ1	1315 aa		4.52	□□□□□ -1.69
UBR3-208	ENST00000474426	KIF4A	O95239	1232 aa		4.52	□□□□□ -1.69
UBR3-208	ENST00000474426	WASHC2C	Q9Y4E1	1318 aa		4.52	□□□□□ -1.69
UBR3-208	ENST00000474426	APLP1	P51693	650 aa		4.51	□□□□□ -1.69
UBR3-208	ENST00000474426	KLHL42	Q9P2K6	505 aa		4.51	□□□□□ -1.69
UBR3-208	ENST00000474426	EXOC5	O00471	708 aa		4.51	□□□□□ -1.69
UBR3-208	ENST00000474426	TRAK2	O60296	914 aa		4.51	□□□□□ -1.69
UBR3-208	ENST00000474426	ZFYVE27	Q5T4F4	411 aa		4.51	□□□□□ -1.69
UBR3-208	ENST00000474426	GPATCH3	Q96I76	525 aa		4.51	□□□□□ -1.69
UBR3-208	ENST00000474426	MAF1	Q9H063	256 aa		4.51	□□□□□ -1.69
UBR3-208	ENST00000474426	NUB1	Q9Y5A7	615 aa		4.51	□□□□□ -1.69
UBR3-208	ENST00000474426	GOLIM4	O00461	696 aa		4.51	□□□□□ -1.69
UBR3-208	ENST00000474426	CSPP1	Q1MSJ5	1256 aa		4.51	□□□□□ -1.69
UBR3-208	ENST00000474426	CCDC181	Q5TID7	509 aa		4.51	□□□□□ -1.69
UBR3-208	ENST00000474426	ONECUT3	O60422	494 aa	Predicted RBP	4.5	□□□□□ -1.69
UBR3-208	ENST00000474426	HS6ST3	Q8IZP7	471 aa		4.5	□□□□□ -1.69
UBR3-208	ENST00000474426	FAM43A	Q8N2R8	423 aa		4.5	□□□□□ -1.69
UBR3-208	ENST00000474426	STK26	Q9P289	416 aa		4.5	□□□□□ -1.69
UBR3-208	ENST00000474426	CREB3	O43889	395 aa		4.5	□□□□□ -1.69
UBR3-208	ENST00000474426	ECM2	O94769	699 aa	Predicted RBP	4.5	□□□□□ -1.69
UBR3-208	ENST00000474426	MAP2K1	Q02750	393 aa	Predicted RBP	4.5	□□□□□ -1.69
UBR3-208	ENST00000474426	P3H3	Q8IVL6	736 aa		4.5	□□□□□ -1.69
UBR3-208	ENST00000474426	MSL3	Q8N5Y2	521 aa	Known RBP	4.5	□□□□□ -1.69
UBR3-208	ENST00000474426	RNF217	Q8TC41	542 aa		4.5	□□□□□ -1.69
UBR3-208	ENST00000474426	PMM1	Q92871	262 aa		4.5	□□□□□ -1.69
UBR3-208	ENST00000474426	VTI1A	Q96AJ9	217 aa		4.5	□□□□□ -1.69
UBR3-208	ENST00000474426	CDCA7	Q9BWT1	371 aa	Predicted RBP	4.5	□□□□□ -1.69
UBR3-208	ENST00000474426	UBA5	Q9GZZ9	404 aa		4.5	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms