RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 EIF4ENIF1Q9NRA8 985 aaKnown RBP4.87□□□□□ -1.63
UBXN4-207ENST00000471246 PPP1R37O75864 691 aa4.86□□□□□ -1.63
UBXN4-207ENST00000471246 DSG2Q14126 1118 aa4.86□□□□□ -1.63
UBXN4-207ENST00000471246 PKDCCQ504Y2 493 aa4.86□□□□□ -1.63
UBXN4-207ENST00000471246 OXER1Q8TDS5 423 aa4.86□□□□□ -1.63
UBXN4-207ENST00000471246 TSR3Q9UJK0 312 aaKnown RBP4.86□□□□□ -1.63
UBXN4-207ENST00000471246 HPS5Q9UPZ3 1129 aa4.86□□□□□ -1.63
UBXN4-207ENST00000471246 NFX1Q12986 1120 aaKnown RBP4.85□□□□□ -1.63
UBXN4-207ENST00000471246 PPP1R3GB7ZBB8 358 aa4.84□□□□□ -1.63
UBXN4-207ENST00000471246 LCE2CQ5TA81 110 aa4.84□□□□□ -1.63
UBXN4-207ENST00000471246 ZDHHC16Q969W1 377 aa4.84□□□□□ -1.63
UBXN4-207ENST00000471246 STK24Q9Y6E0 443 aa4.84□□□□□ -1.63
UBXN4-207ENST00000471246 COL9A1P20849 921 aa4.83□□□□□ -1.64
UBXN4-207ENST00000471246 UPF1Q92900 1129 aaKnown RBP eCLIP4.83□□□□□ -1.64
UBXN4-207ENST00000471246 JPH4Q96JJ6 628 aa4.83□□□□□ -1.64
UBXN4-207ENST00000471246 GPHNQ9NQX3 736 aaPredicted RBP4.83□□□□□ -1.64
UBXN4-207ENST00000471246 ST8SIA5O15466 376 aa4.82□□□□□ -1.64
UBXN4-207ENST00000471246 CDKN2AIPQ9NXV6 580 aaPredicted RBP4.82□□□□□ -1.64
UBXN4-207ENST00000471246 KIAA1468Q9P260 1216 aa4.82□□□□□ -1.64
UBXN4-207ENST00000471246 SEPT9Q9UHD8 586 aaPredicted RBP4.82□□□□□ -1.64
UBXN4-207ENST00000471246 ZNF516Q92618 1163 aa4.81□□□□□ -1.64
UBXN4-207ENST00000471246 MTRQ99707 1265 aa4.81□□□□□ -1.64
UBXN4-207ENST00000471246 ANO8Q9HCE9 1232 aaPredicted RBP4.81□□□□□ -1.64
UBXN4-207ENST00000471246 AAASQ9NRG9 546 aa4.81□□□□□ -1.64
UBXN4-207ENST00000471246 IL21Q9HBE4 155 aa4.8□□□□□ -1.64
UBXN4-207ENST00000471246 LRCH3Q96II8 777 aa4.79□□□□□ -1.64
UBXN4-207ENST00000471246 FAM187AA6NFU0 413 aa4.78□□□□□ -1.64
UBXN4-207ENST00000471246 NKX2-3Q8TAU0 364 aa4.78□□□□□ -1.64
UBXN4-207ENST00000471246 EMID1Q96A84 441 aaPredicted RBP4.78□□□□□ -1.64
UBXN4-207ENST00000471246 DACH1Q9UI36 760 aa4.78□□□□□ -1.64
UBXN4-207ENST00000471246 PRR20EP86478 221 aa4.77□□□□□ -1.65
UBXN4-207ENST00000471246 PRR20CP86479 221 aa4.77□□□□□ -1.65
UBXN4-207ENST00000471246 PRR20DP86480 221 aa4.77□□□□□ -1.65
UBXN4-207ENST00000471246 PRR20BP86481 221 aa4.77□□□□□ -1.65
UBXN4-207ENST00000471246 PRR20AP86496 221 aa4.77□□□□□ -1.65
UBXN4-207ENST00000471246 FAM98CQ17RN3 349 aaKnown RBP4.77□□□□□ -1.65
UBXN4-207ENST00000471246 ONECUT3O60422 494 aaPredicted RBP4.76□□□□□ -1.65
UBXN4-207ENST00000471246 PPP4CP60510 307 aa4.76□□□□□ -1.65
UBXN4-207ENST00000471246 GMPR2Q9P2T1 348 aaKnown RBP4.75□□□□□ -1.65
UBXN4-207ENST00000471246 STK25O00506 426 aa4.74□□□□□ -1.65
UBXN4-207ENST00000471246 EVI5O60447 810 aa4.74□□□□□ -1.65
UBXN4-207ENST00000471246 LORP23490 312 aaPredicted RBP4.74□□□□□ -1.65
UBXN4-207ENST00000471246 SLC19A1P41440 591 aa4.74□□□□□ -1.65
UBXN4-207ENST00000471246 GDF9O60383 454 aa4.73□□□□□ -1.65
UBXN4-207ENST00000471246 SPRYD7Q5W111 196 aa4.73□□□□□ -1.65
UBXN4-207ENST00000471246 PCDHGA10Q9Y5H3 936 aa4.73□□□□□ -1.65
UBXN4-207ENST00000471246 FAM181BA6NEQ2 426 aa4.72□□□□□ -1.65
UBXN4-207ENST00000471246 C11orf95C9JLR9 678 aaPredicted RBP4.72□□□□□ -1.65
UBXN4-207ENST00000471246 GGCXP38435 758 aa4.72□□□□□ -1.65
UBXN4-207ENST00000471246 ZNF598Q86UK7 904 aaKnown RBP4.72□□□□□ -1.65
UBXN4-207ENST00000471246 TMUB1Q9BVT8 246 aa4.72□□□□□ -1.65
UBXN4-207ENST00000471246 TRIM6-TRIM34B2RNG4 842 aa4.71□□□□□ -1.66
UBXN4-207ENST00000471246 TNFRSF10AO00220 468 aa4.71□□□□□ -1.66
UBXN4-207ENST00000471246 KRTAP4-8Q9BYQ9 185 aa4.71□□□□□ -1.66
UBXN4-207ENST00000471246 TERTO14746 1132 aaKnown RBP4.7□□□□□ -1.66
UBXN4-207ENST00000471246 CRIPAKQ8N1N5 446 aa4.69□□□□□ -1.66
UBXN4-207ENST00000471246 TAOK2Q9UL54 1235 aa4.69□□□□□ -1.66
UBXN4-207ENST00000471246 RNF223E7ERA6 249 aa4.68□□□□□ -1.66
UBXN4-207ENST00000471246 ZNF697Q5TEC3 545 aa4.68□□□□□ -1.66
UBXN4-207ENST00000471246 APLP1P51693 650 aa4.67□□□□□ -1.66
UBXN4-207ENST00000471246 XP32Q5T750 250 aa4.67□□□□□ -1.66
UBXN4-207ENST00000471246 LIAT1Q6ZQX7 453 aa4.67□□□□□ -1.66
UBXN4-207ENST00000471246 SAMD7Q7Z3H4 446 aa4.67□□□□□ -1.66
UBXN4-207ENST00000471246 KCTD17Q8N5Z5 321 aa4.67□□□□□ -1.66
UBXN4-207ENST00000471246 ZSCAN1Q8NBB4 408 aa4.67□□□□□ -1.66
UBXN4-207ENST00000471246 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.66□□□□□ -1.66
UBXN4-207ENST00000471246 PPP1R15BQ5SWA1 713 aa4.66□□□□□ -1.66
UBXN4-207ENST00000471246 C6orf132Q5T0Z8 1188 aa4.66□□□□□ -1.66
UBXN4-207ENST00000471246 TYW1BQ6NUM6 668 aa4.66□□□□□ -1.66
UBXN4-207ENST00000471246 COPS2P61201 443 aa4.65□□□□□ -1.67
UBXN4-207ENST00000471246 FBXW7Q969H0 707 aa4.65□□□□□ -1.67
UBXN4-207ENST00000471246 AVPP01185 164 aa4.64□□□□□ -1.67
UBXN4-207ENST00000471246 SNRPBP14678 240 aaKnown RBP4.64□□□□□ -1.67
UBXN4-207ENST00000471246 KRTAP9-2Q9BYQ4 174 aa4.64□□□□□ -1.67
UBXN4-207ENST00000471246 KRTAP9-6A0A140TA67 174 aa4.63□□□□□ -1.67
UBXN4-207ENST00000471246 AXIN1O15169 862 aa4.63□□□□□ -1.67
UBXN4-207ENST00000471246 PHF14O94880 888 aa4.63□□□□□ -1.67
UBXN4-207ENST00000471246 GMPRP36959 345 aa4.63□□□□□ -1.67
UBXN4-207ENST00000471246 CRISPLD2Q9H0B8 497 aa4.63□□□□□ -1.67
UBXN4-207ENST00000471246 TSKSQ9UJT2 592 aa4.63□□□□□ -1.67
UBXN4-207ENST00000471246 SMAPO00193 183 aa4.62□□□□□ -1.67
UBXN4-207ENST00000471246 PPEF1O14829 653 aaPredicted RBP4.62□□□□□ -1.67
UBXN4-207ENST00000471246 GSK3AP49840 483 aa4.62□□□□□ -1.67
UBXN4-207ENST00000471246 ZPR1O75312 459 aa4.61□□□□□ -1.67
UBXN4-207ENST00000471246 MAP3K9P80192 1104 aa4.61□□□□□ -1.67
UBXN4-207ENST00000471246 PKD2L1Q9P0L9 805 aa4.61□□□□□ -1.67
UBXN4-207ENST00000471246 SMCPP49901 116 aaPredicted RBP4.6□□□□□ -1.67
UBXN4-207ENST00000471246 PACS2Q86VP3 889 aa4.6□□□□□ -1.67
UBXN4-207ENST00000471246 ANKLE1Q8NAG6 615 aa4.6□□□□□ -1.67
UBXN4-207ENST00000471246 C3orf80F5H4A9 247 aa4.59□□□□□ -1.67
UBXN4-207ENST00000471246 KCNMA1Q12791 1236 aa4.59□□□□□ -1.67
UBXN4-207ENST00000471246 CTC1Q2NKJ3 1217 aa4.59□□□□□ -1.67
UBXN4-207ENST00000471246 FOXC1Q12948 553 aa4.58□□□□□ -1.68
UBXN4-207ENST00000471246 KRTAP1-3Q8IUG1 177 aa4.58□□□□□ -1.68
UBXN4-207ENST00000471246 TOR4AQ9NXH8 423 aa4.58□□□□□ -1.68
UBXN4-207ENST00000471246 PLA2G2CQ5R387 149 aa4.57□□□□□ -1.68
UBXN4-207ENST00000471246 TRIM47Q96LD4 638 aa4.57□□□□□ -1.68
UBXN4-207ENST00000471246 ATP13A2Q9NQ11 1180 aa4.57□□□□□ -1.68
UBXN4-207ENST00000471246 FAM198AQ9UFP1 575 aa4.57□□□□□ -1.68
UBXN4-207ENST00000471246 NCKAP5LQ9HCH0 1330 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms