RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 DDRGK1Q96HY6 314 aa5.61□□□□□ -1.51
VPS50-210ENST00000471188 URB2Q14146 1524 aaKnown RBP5.6□□□□□ -1.51
VPS50-210ENST00000471188 CHD1O14646 1710 aa5.6□□□□□ -1.51
VPS50-210ENST00000471188 RRP9O43818 475 aaKnown RBP5.6□□□□□ -1.51
VPS50-210ENST00000471188 ECM2O94769 699 aaPredicted RBP5.6□□□□□ -1.51
VPS50-210ENST00000471188 RBM10P98175 930 aaKnown RBP5.6□□□□□ -1.51
VPS50-210ENST00000471188 CABP2Q9NPB3 220 aa5.6□□□□□ -1.51
VPS50-210ENST00000471188 SHROOM2Q13796 1616 aa5.6□□□□□ -1.51
VPS50-210ENST00000471188 AKNAQ7Z591 1439 aa5.59□□□□□ -1.51
VPS50-210ENST00000471188 RRAGDQ9NQL2 400 aaPredicted RBP5.59□□□□□ -1.51
VPS50-210ENST00000471188 EIF4G3O43432 1585 aaKnown RBP5.59□□□□□ -1.51
VPS50-210ENST00000471188 TCERG1O14776 1098 aaKnown RBP5.59□□□□□ -1.52
VPS50-210ENST00000471188 FRAT2O75474 233 aaPredicted RBP5.59□□□□□ -1.52
VPS50-210ENST00000471188 MKRN3Q13064 507 aaKnown RBP5.59□□□□□ -1.52
VPS50-210ENST00000471188 SGIP1Q9BQI5 828 aa5.59□□□□□ -1.52
VPS50-210ENST00000471188 ZBED9Q6R2W3 1325 aa5.59□□□□□ -1.52
VPS50-210ENST00000471188 TONSLQ96HA7 1378 aa5.58□□□□□ -1.52
VPS50-210ENST00000471188 PLCG2P16885 1265 aa5.58□□□□□ -1.52
VPS50-210ENST00000471188 FAM50AQ14320 339 aaKnown RBP5.58□□□□□ -1.52
VPS50-210ENST00000471188 CCNB3Q8WWL7 1395 aa5.58□□□□□ -1.52
VPS50-210ENST00000471188 DNMBPQ6XZF7 1577 aa5.58□□□□□ -1.52
VPS50-210ENST00000471188 BACH2Q9BYV9 841 aa5.57□□□□□ -1.52
VPS50-210ENST00000471188 PDE4CQ08493 712 aa5.57□□□□□ -1.52
VPS50-210ENST00000471188 PDAP1Q13442 181 aaKnown RBP5.57□□□□□ -1.52
VPS50-210ENST00000471188 PDS5BQ9NTI5 1447 aa5.57□□□□□ -1.52
VPS50-210ENST00000471188 CEP164Q9UPV0 1460 aa5.57□□□□□ -1.52
VPS50-210ENST00000471188 RNF25Q96BH1 459 aaPredicted RBP5.56□□□□□ -1.52
VPS50-210ENST00000471188 CADPSQ9ULU8 1353 aa5.56□□□□□ -1.52
VPS50-210ENST00000471188 PBRM1Q86U86 1689 aa5.56□□□□□ -1.52
VPS50-210ENST00000471188 ABCA5Q8WWZ7 1642 aa5.56□□□□□ -1.52
VPS50-210ENST00000471188 MAPKBP1O60336 1514 aa5.56□□□□□ -1.52
VPS50-210ENST00000471188 POTEFA5A3E0 1075 aa5.56□□□□□ -1.52
VPS50-210ENST00000471188 NUDCQ9Y266 331 aa5.56□□□□□ -1.52
VPS50-210ENST00000471188 AAMPQ13685 434 aa5.55□□□□□ -1.52
VPS50-210ENST00000471188 FAM163AQ96GL9 167 aaPredicted RBP5.55□□□□□ -1.52
VPS50-210ENST00000471188 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.55□□□□□ -1.522e-6■■■■□ 23.6
VPS50-210ENST00000471188 IER5LQ5T953 404 aa5.55□□□□□ -1.52
VPS50-210ENST00000471188 POLR3GLQ9BT43 218 aa5.55□□□□□ -1.52
VPS50-210ENST00000471188 FGD1P98174 961 aa5.54□□□□□ -1.52
VPS50-210ENST00000471188 EXOC6Q8TAG9 804 aa5.54□□□□□ -1.52
VPS50-210ENST00000471188 POTEJP0CG39 1038 aa5.54□□□□□ -1.52
VPS50-210ENST00000471188 SKAP1Q86WV1 359 aa5.54□□□□□ -1.52
VPS50-210ENST00000471188 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.54□□□□□ -1.52
VPS50-210ENST00000471188 RGS3P49796 1198 aa5.54□□□□□ -1.52
VPS50-210ENST00000471188 L1TD1Q5T7N2 865 aaKnown RBP5.54□□□□□ -1.52
VPS50-210ENST00000471188 ZFP91Q96JP5 570 aaPredicted RBP5.54□□□□□ -1.52
VPS50-210ENST00000471188 PRKRIP1Q9H875 184 aaPredicted RBP5.54□□□□□ -1.52
VPS50-210ENST00000471188 POGKQ9P215 609 aa5.54□□□□□ -1.52
VPS50-210ENST00000471188 SETD5Q9C0A6 1442 aa5.54□□□□□ -1.52
VPS50-210ENST00000471188 STK25O00506 426 aa5.53□□□□□ -1.52
VPS50-210ENST00000471188 RGL2O15211 777 aa5.53□□□□□ -1.52
VPS50-210ENST00000471188 ERCC6Q03468 1493 aa5.53□□□□□ -1.52
VPS50-210ENST00000471188 RIOK3O14730 519 aaKnown RBP5.53□□□□□ -1.52
VPS50-210ENST00000471188 STK24Q9Y6E0 443 aa5.53□□□□□ -1.52
VPS50-210ENST00000471188 BIVM-ERCC5R4GMW8 1640 aa5.53□□□□□ -1.52
VPS50-210ENST00000471188 RRBP1Q9P2E9 1410 aaKnown RBP5.52□□□□□ -1.53
VPS50-210ENST00000471188 HSPA5P11021 654 aaKnown RBP5.52□□□□□ -1.53
VPS50-210ENST00000471188 MS4A1P11836 297 aa5.52□□□□□ -1.53
VPS50-210ENST00000471188 PKD2Q13563 968 aa5.52□□□□□ -1.53
VPS50-210ENST00000471188 KIF21BO75037 1637 aa5.52□□□□□ -1.53
VPS50-210ENST00000471188 CHRM1P11229 460 aaPredicted RBP5.52□□□□□ -1.53
VPS50-210ENST00000471188 DPY19L2Q6NUT2 758 aa5.52□□□□□ -1.53
VPS50-210ENST00000471188 EFCAB3Q8N7B9 438 aa5.52□□□□□ -1.53
VPS50-210ENST00000471188 BCL11BQ9C0K0 894 aaPredicted RBP5.52□□□□□ -1.53
VPS50-210ENST00000471188 ARID3AQ99856 593 aa5.52□□□□□ -1.53
VPS50-210ENST00000471188 ATP1B4Q9UN42 357 aaPredicted RBP5.52□□□□□ -1.53
VPS50-210ENST00000471188 IFT140Q96RY7 1462 aa5.52□□□□□ -1.53
VPS50-210ENST00000471188 GZF1Q9H116 711 aaPredicted RBP5.51□□□□□ -1.53
VPS50-210ENST00000471188 FANCD2Q9BXW9 1451 aa5.51□□□□□ -1.53
VPS50-210ENST00000471188 RAPGEF2Q9Y4G8 1499 aa5.51□□□□□ -1.53
VPS50-210ENST00000471188 EIF4G2P78344 907 aaKnown RBP eCLIP5.51□□□□□ -1.53
VPS50-210ENST00000471188 OCEL1Q9H607 264 aa5.51□□□□□ -1.53
VPS50-210ENST00000471188 SLKQ9H2G2 1235 aaPredicted RBP5.5□□□□□ -1.53
VPS50-210ENST00000471188 SMG6Q86US8 1419 aaKnown RBP5.5□□□□□ -1.53
VPS50-210ENST00000471188 CLCN1P35523 988 aa5.5□□□□□ -1.53
VPS50-210ENST00000471188 KIF13AQ9H1H9 1805 aa5.49□□□□□ -1.53
VPS50-210ENST00000471188 GOLGA6L3A6NEY3 463 aa5.49□□□□□ -1.53
VPS50-210ENST00000471188 SNPHO15079 494 aa5.49□□□□□ -1.53
VPS50-210ENST00000471188 TOPBP1Q92547 1522 aa5.49□□□□□ -1.53
VPS50-210ENST00000471188 G3V3G9 751 aa5.49□□□□□ -1.53
VPS50-210ENST00000471188 RRP1P56182 461 aaKnown RBP5.49□□□□□ -1.53
VPS50-210ENST00000471188 IRX5P78411 483 aaPredicted RBP5.49□□□□□ -1.53
VPS50-210ENST00000471188 SLAIN1Q8ND83 568 aa5.49□□□□□ -1.53
VPS50-210ENST00000471188 TRIM44Q96DX7 344 aaPredicted RBP5.49□□□□□ -1.53
VPS50-210ENST00000471188 PDCL3Q9H2J4 239 aa5.49□□□□□ -1.53
VPS50-210ENST00000471188 VGFO15240 615 aaPredicted RBP5.49□□□□□ -1.53
VPS50-210ENST00000471188 PDIA4P13667 645 aaKnown RBP5.49□□□□□ -1.53
VPS50-210ENST00000471188 PANK2Q9BZ23 570 aa5.49□□□□□ -1.53
VPS50-210ENST00000471188 ARHGEF11O15085 1522 aa5.48□□□□□ -1.53
VPS50-210ENST00000471188 C3orf67Q6ZVT6 689 aa5.48□□□□□ -1.53
VPS50-210ENST00000471188 TMC1Q8TDI8 760 aa5.48□□□□□ -1.53
VPS50-210ENST00000471188 RCAN3Q9UKA8 241 aa5.48□□□□□ -1.53
VPS50-210ENST00000471188 CNTLNQ9NXG0 1405 aa5.48□□□□□ -1.53
VPS50-210ENST00000471188 CALD1Q05682 793 aaKnown RBP5.47□□□□□ -1.53
VPS50-210ENST00000471188 RNF123Q5XPI4 1314 aa5.47□□□□□ -1.53
VPS50-210ENST00000471188 PLIN1O60240 522 aa5.47□□□□□ -1.53
VPS50-210ENST00000471188 XRCC6P12956 609 aaKnown RBP eCLIP5.47□□□□□ -1.53
VPS50-210ENST00000471188 CHGAP10645 457 aaKnown RBP5.47□□□□□ -1.53
VPS50-210ENST00000471188 BBXQ8WY36 941 aaPredicted RBP5.47□□□□□ -1.53
VPS50-210ENST00000471188 MYH16Q9H6N6 1097 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms