RNA–Protein interactions for RNA: ENST00000469415.1

MCF2L-221, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 3,027 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-221ENST00000469415 CHD1O14646 1710 aa24.12■■□□□ 1.45
MCF2L-221ENST00000469415 FAM135AQ9P2D6 1515 aa24.12■■□□□ 1.45
MCF2L-221ENST00000469415 PPP4R2Q9NY27 417 aa24.12■■□□□ 1.45
MCF2L-221ENST00000469415 TTC37Q6PGP7 1564 aa24.11■■□□□ 1.45
MCF2L-221ENST00000469415 SHANK2Q9UPX8 1470 aa24.1■■□□□ 1.45
MCF2L-221ENST00000469415 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.08■■□□□ 1.44
MCF2L-221ENST00000469415 SPAG9O60271 1321 aaKnown RBP24.07■■□□□ 1.44
MCF2L-221ENST00000469415 RALGAPBQ86X10 1494 aa24.07■■□□□ 1.44
MCF2L-221ENST00000469415 CDC42BPBQ9Y5S2 1711 aa24.07■■□□□ 1.44
MCF2L-221ENST00000469415 PANK3Q9H999 370 aa24.06■■□□□ 1.44
MCF2L-221ENST00000469415 KDM5CP41229 1560 aa24.05■■□□□ 1.44
MCF2L-221ENST00000469415 ARHGEF12Q9NZN5 1544 aa24.05■■□□□ 1.44
MCF2L-221ENST00000469415 TRAPPC8Q9Y2L5 1435 aa24.05■■□□□ 1.44
MCF2L-221ENST00000469415 PLA2R1Q13018 1463 aa24.04■■□□□ 1.44
MCF2L-221ENST00000469415 KIF3BO15066 747 aa24.03■■□□□ 1.44
MCF2L-221ENST00000469415 NUDCQ9Y266 331 aa24.03■■□□□ 1.44
MCF2L-221ENST00000469415 UHRF1BP1Q6BDS2 1440 aa24.03■■□□□ 1.44
MCF2L-221ENST00000469415 CHGAP10645 457 aaKnown RBP24.02■■□□□ 1.44
MCF2L-221ENST00000469415 DISP3Q9P2K9 1392 aa24.01■■□□□ 1.43
MCF2L-221ENST00000469415 MYBBP1AQ9BQG0 1328 aaKnown RBP24■■□□□ 1.43
MCF2L-221ENST00000469415 PRAG1Q86YV5 1406 aa23.99■■□□□ 1.43
MCF2L-221ENST00000469415 CCDC136Q96JN2 1154 aa23.99■■□□□ 1.43
MCF2L-221ENST00000469415 CDCA7LQ96GN5 454 aa23.97■■□□□ 1.43
MCF2L-221ENST00000469415 ANP32EQ9BTT0 268 aa23.97■■□□□ 1.43
MCF2L-221ENST00000469415 PREX2Q70Z35 1606 aa23.97■■□□□ 1.43
MCF2L-221ENST00000469415 ARHGEF5Q12774 1597 aa23.97■■□□□ 1.43
MCF2L-221ENST00000469415 ARID4BQ4LE39 1312 aaPredicted RBP23.97■■□□□ 1.43
MCF2L-221ENST00000469415 A2MP01023 1474 aa23.96■■□□□ 1.43
MCF2L-221ENST00000469415 TESK2Q96S53 571 aa23.96■■□□□ 1.43
MCF2L-221ENST00000469415 RALBP1Q15311 655 aa23.95■■□□□ 1.43
MCF2L-221ENST00000469415 ABCC2Q92887 1545 aa23.95■■□□□ 1.42
MCF2L-221ENST00000469415 KTN1Q86UP2 1357 aaKnown RBP23.95■■□□□ 1.42
MCF2L-221ENST00000469415 TMF1P82094 1093 aa23.94■■□□□ 1.42
MCF2L-221ENST00000469415 MSH5O43196 834 aa23.93■■□□□ 1.42
MCF2L-221ENST00000469415 PLCH2O75038 1416 aa23.92■■□□□ 1.42
MCF2L-221ENST00000469415 NLRP13Q86W25 1043 aa23.92■■□□□ 1.42
MCF2L-221ENST00000469415 PER1O15534 1290 aaPredicted RBP23.91■■□□□ 1.42
MCF2L-221ENST00000469415 SCAPERQ9BY12 1400 aa23.89■■□□□ 1.42
MCF2L-221ENST00000469415 KDM5DQ9BY66 1539 aa23.89■■□□□ 1.41
MCF2L-221ENST00000469415 PLIN1O60240 522 aa23.89■■□□□ 1.41
MCF2L-221ENST00000469415 NUTM2DQ5VT03 806 aaPredicted RBP23.87■■□□□ 1.41
MCF2L-221ENST00000469415 GGT6Q6P531 493 aa23.86■■□□□ 1.41
MCF2L-221ENST00000469415 SMG6Q86US8 1419 aaKnown RBP23.86■■□□□ 1.41
MCF2L-221ENST00000469415 ERICH6Q7L0X2 663 aa23.86■■□□□ 1.41
MCF2L-221ENST00000469415 CFAP70Q5T0N1 1121 aa23.85■■□□□ 1.41
MCF2L-221ENST00000469415 KNSTRNQ9Y448 316 aa23.84■■□□□ 1.41
MCF2L-221ENST00000469415 BRD4O60885 1362 aaPredicted RBP23.84■■□□□ 1.41
MCF2L-221ENST00000469415 EXOC6Q8TAG9 804 aa23.84■■□□□ 1.41
MCF2L-221ENST00000469415 ERBINQ96RT1 1412 aa23.83■■□□□ 1.41
MCF2L-221ENST00000469415 ERICH6BQ5W0A0 696 aa23.81■■□□□ 1.4
MCF2L-221ENST00000469415 RCAN3Q9UKA8 241 aa23.81■■□□□ 1.4
MCF2L-221ENST00000469415 MYO5CQ9NQX4 1742 aa23.8■■□□□ 1.4
MCF2L-221ENST00000469415 DUOX2Q9NRD8 1548 aa23.79■■□□□ 1.4
MCF2L-221ENST00000469415 ADAMTS8Q9UP79 889 aa23.79■■□□□ 1.4
MCF2L-221ENST00000469415 POLR1AO95602 1720 aaPredicted RBP23.79■■□□□ 1.4
MCF2L-221ENST00000469415 ZCCHC11Q5TAX3 1644 aaKnown RBP23.79■■□□□ 1.4
MCF2L-221ENST00000469415 NPM1P06748 294 aaKnown RBP eCLIP23.78■■□□□ 1.4
MCF2L-221ENST00000469415 TNNT2P45379 298 aaPredicted RBP23.78■■□□□ 1.4
MCF2L-221ENST00000469415 CCDC146Q8IYE0 955 aa23.77■■□□□ 1.4
MCF2L-221ENST00000469415 SKAP1Q86WV1 359 aa23.77■■□□□ 1.4
MCF2L-221ENST00000469415 SHROOM2Q13796 1616 aa23.76■■□□□ 1.39
MCF2L-221ENST00000469415 PARD3Q8TEW0 1356 aa23.75■■□□□ 1.39
MCF2L-221ENST00000469415 ADGRF5Q8IZF2 1346 aa23.75■■□□□ 1.39
MCF2L-221ENST00000469415 LRPPRCP42704 1394 aaKnown RBP23.74■■□□□ 1.39
MCF2L-221ENST00000469415 RRP1P56182 461 aaKnown RBP23.74■■□□□ 1.39
MCF2L-221ENST00000469415 FANCAO15360 1455 aa23.73■■□□□ 1.39
MCF2L-221ENST00000469415 WDR43Q15061 677 aaKnown RBP eCLIP23.73■■□□□ 1.39
MCF2L-221ENST00000469415 TRPM1Q7Z4N2 1603 aa23.72■■□□□ 1.39
MCF2L-221ENST00000469415 KANK1Q14678 1352 aa23.72■■□□□ 1.39
MCF2L-221ENST00000469415 GPRASP1Q5JY77 1395 aa23.72■■□□□ 1.39
MCF2L-221ENST00000469415 NPM2Q86SE8 214 aaKnown RBP23.71■■□□□ 1.39
MCF2L-221ENST00000469415 TRAK1Q9UPV9 953 aa23.71■■□□□ 1.39
MCF2L-221ENST00000469415 TMEM132EQ6IEE7 984 aa23.71■■□□□ 1.39
MCF2L-221ENST00000469415 COL17A1Q9UMD9 1497 aaPredicted RBP23.7■■□□□ 1.38
MCF2L-221ENST00000469415 PPP2R1AP30153 589 aa23.69■■□□□ 1.38
MCF2L-221ENST00000469415 SAFB2Q14151 953 aaKnown RBP eCLIP23.69■■□□□ 1.38
MCF2L-221ENST00000469415 ABCC1P33527 1531 aa23.69■■□□□ 1.38
MCF2L-221ENST00000469415 UNC13BO14795 1591 aa23.69■■□□□ 1.38
MCF2L-221ENST00000469415 UGGT1Q9NYU2 1555 aa23.68■■□□□ 1.38
MCF2L-221ENST00000469415 PRKCSHP14314 528 aaPredicted RBP23.68■■□□□ 1.38
MCF2L-221ENST00000469415 RAPGEF3O95398 923 aa23.68■■□□□ 1.38
MCF2L-221ENST00000469415 ADGRL1O94910 1474 aa23.67■■□□□ 1.38
MCF2L-221ENST00000469415 MAST1Q9Y2H9 1570 aa23.66■■□□□ 1.38
MCF2L-221ENST00000469415 ATP10AO60312 1499 aa23.66■■□□□ 1.38
MCF2L-221ENST00000469415 IQGAP3Q86VI3 1631 aa23.66■■□□□ 1.38
MCF2L-221ENST00000469415 WDR7Q9Y4E6 1490 aa23.65■■□□□ 1.38
MCF2L-221ENST00000469415 PLXNC1O60486 1568 aa23.64■■□□□ 1.37
MCF2L-221ENST00000469415 MAGI2Q86UL8 1455 aa23.63■■□□□ 1.37
MCF2L-221ENST00000469415 ASXL2Q76L83 1435 aa23.63■■□□□ 1.37
MCF2L-221ENST00000469415 RNF123Q5XPI4 1314 aa23.63■■□□□ 1.37
MCF2L-221ENST00000469415 NEUROD2Q15784 382 aa23.63■■□□□ 1.37
MCF2L-221ENST00000469415 C20orf194Q5TEA3 1177 aa23.63■■□□□ 1.37
MCF2L-221ENST00000469415 AMER1Q5JTC6 1135 aaPredicted RBP23.62■■□□□ 1.37
MCF2L-221ENST00000469415 CLASP1Q7Z460 1538 aa23.62■■□□□ 1.37
MCF2L-221ENST00000469415 FANCIQ9NVI1 1328 aa23.6■■□□□ 1.37
MCF2L-221ENST00000469415 CFAP65Q6ZU64 1925 aaKnown RBP23.6■■□□□ 1.37
MCF2L-221ENST00000469415 CRBNQ96SW2 442 aa23.6■■□□□ 1.37
MCF2L-221ENST00000469415 PRDM15P57071 1507 aaPredicted RBP23.6■■□□□ 1.37
MCF2L-221ENST00000469415 OSCARQ8IYS5 282 aa23.59■■□□□ 1.37
MCF2L-221ENST00000469415 CDCA8Q53HL2 280 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms