RNA–Protein interactions for RNA: ENST00000467273.5

PTCD3-207, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 757 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-207ENST00000467273 WNT2BQ93097 391 aa10.77□□□□□ -0.69
PTCD3-207ENST00000467273 IRX2Q9BZI1 471 aaPredicted RBP10.77□□□□□ -0.69
PTCD3-207ENST00000467273 CHGAP10645 457 aaKnown RBP10.76□□□□□ -0.69
PTCD3-207ENST00000467273 MRPL50Q8N5N7 158 aaKnown RBP10.76□□□□□ -0.69
PTCD3-207ENST00000467273 SLC4A5Q9BY07 1137 aa10.75□□□□□ -0.69
PTCD3-207ENST00000467273 FOSBP53539 338 aa10.74□□□□□ -0.69
PTCD3-207ENST00000467273 PPP1R15BQ5SWA1 713 aa10.74□□□□□ -0.69
PTCD3-207ENST00000467273 CEP164Q9UPV0 1460 aa10.74□□□□□ -0.69
PTCD3-207ENST00000467273 A0A0G2JS52 829 aa10.73□□□□□ -0.69
PTCD3-207ENST00000467273 BHMG1C9JSJ3 638 aaPredicted RBP10.73□□□□□ -0.69
PTCD3-207ENST00000467273 RGS20O76081 388 aa10.73□□□□□ -0.69
PTCD3-207ENST00000467273 ZBED2Q9BTP6 218 aa10.73□□□□□ -0.69
PTCD3-207ENST00000467273 IFFO2Q5TF58 517 aa10.72□□□□□ -0.69
PTCD3-207ENST00000467273 CRISPLD2Q9H0B8 497 aa10.71□□□□□ -0.69
PTCD3-207ENST00000467273 RIMBP3CA6NJZ7 1639 aa10.7□□□□□ -0.7
PTCD3-207ENST00000467273 RIMBP3BA6NNM3 1639 aa10.7□□□□□ -0.7
PTCD3-207ENST00000467273 RIMBP3Q9UFD9 1639 aa10.7□□□□□ -0.7
PTCD3-207ENST00000467273 MROH2BQ7Z745 1585 aa10.7□□□□□ -0.7
PTCD3-207ENST00000467273 NBPF3Q9H094 633 aa10.7□□□□□ -0.7
PTCD3-207ENST00000467273 JPH4Q96JJ6 628 aa10.69□□□□□ -0.7
PTCD3-207ENST00000467273 ZDHHC16Q969W1 377 aa10.68□□□□□ -0.7
PTCD3-207ENST00000467273 ADAM33Q9BZ11 813 aa10.68□□□□□ -0.7
PTCD3-207ENST00000467273 EVI5O60447 810 aa10.67□□□□□ -0.7
PTCD3-207ENST00000467273 NKX1-1Q15270 411 aaPredicted RBP10.67□□□□□ -0.7
PTCD3-207ENST00000467273 FANCD2Q9BXW9 1451 aa10.67□□□□□ -0.7
PTCD3-207ENST00000467273 RYDENQ9NUL5 291 aaKnown RBP10.66□□□□□ -0.7
PTCD3-207ENST00000467273 ARHGEF11O15085 1522 aa10.64□□□□□ -0.71
PTCD3-207ENST00000467273 NCKAP5LQ9HCH0 1330 aa10.63□□□□□ -0.71
PTCD3-207ENST00000467273 CFTRP13569 1480 aa10.62□□□□□ -0.71
PTCD3-207ENST00000467273 SLC24A1O60721 1099 aa10.62□□□□□ -0.71
PTCD3-207ENST00000467273 PDE4AP27815 886 aa10.62□□□□□ -0.71
PTCD3-207ENST00000467273 ANO8Q9HCE9 1232 aaPredicted RBP10.62□□□□□ -0.71
PTCD3-207ENST00000467273 ANKK1Q8NFD2 765 aa10.61□□□□□ -0.71
PTCD3-207ENST00000467273 MAP3K9P80192 1104 aa10.6□□□□□ -0.71
PTCD3-207ENST00000467273 URB2Q14146 1524 aaKnown RBP10.59□□□□□ -0.71
PTCD3-207ENST00000467273 PROX2Q3B8N5 592 aa10.59□□□□□ -0.71
PTCD3-207ENST00000467273 LARP6Q9BRS8 491 aaKnown RBP10.59□□□□□ -0.71
PTCD3-207ENST00000467273 PPP1R3GB7ZBB8 358 aa10.58□□□□□ -0.72
PTCD3-207ENST00000467273 BCAMP50895 628 aa10.58□□□□□ -0.72
PTCD3-207ENST00000467273 DDX27Q96GQ7 796 aaKnown RBP10.57□□□□□ -0.72
PTCD3-207ENST00000467273 RABGEF1Q9UJ41 708 aa10.57□□□□□ -0.72
PTCD3-207ENST00000467273 Q6ZNB5 142 aa10.56□□□□□ -0.72
PTCD3-207ENST00000467273 IFT140Q96RY7 1462 aa10.55□□□□□ -0.72
PTCD3-207ENST00000467273 WIZO95785 1651 aa10.54□□□□□ -0.72
PTCD3-207ENST00000467273 ITGBL1O95965 494 aaPredicted RBP10.54□□□□□ -0.72
PTCD3-207ENST00000467273 COL9A1P20849 921 aa10.54□□□□□ -0.72
PTCD3-207ENST00000467273 PCDHGA10Q9Y5H3 936 aa10.54□□□□□ -0.72
PTCD3-207ENST00000467273 CYB5RLQ6IPT4 315 aa10.53□□□□□ -0.72
PTCD3-207ENST00000467273 PRDM2Q13029 1718 aa10.52□□□□□ -0.73
PTCD3-207ENST00000467273 RSF1Q96T23 1441 aaPredicted RBP10.51□□□□□ -0.73
PTCD3-207ENST00000467273 SOWAHBA6NEL2 793 aa10.5□□□□□ -0.73
PTCD3-207ENST00000467273 EMILIN3Q9NT22 766 aa10.5□□□□□ -0.73
PTCD3-207ENST00000467273 ARAP1Q96P48 1450 aa10.49□□□□□ -0.73
PTCD3-207ENST00000467273 ZNF608Q9ULD9 1512 aaPredicted RBP10.49□□□□□ -0.73
PTCD3-207ENST00000467273 TYW1BQ6NUM6 668 aa10.49□□□□□ -0.73
PTCD3-207ENST00000467273 ZFRQ96KR1 1074 aaKnown RBP10.49□□□□□ -0.73
PTCD3-207ENST00000467273 KIAA1468Q9P260 1216 aa10.49□□□□□ -0.73
PTCD3-207ENST00000467273 LAPTM4BQ86VI4 370 aa10.48□□□□□ -0.73
PTCD3-207ENST00000467273 FBXW7Q969H0 707 aa10.48□□□□□ -0.73
PTCD3-207ENST00000467273 WBP1LQ9NX94 342 aa10.48□□□□□ -0.73
PTCD3-207ENST00000467273 SEPT9Q9UHD8 586 aaPredicted RBP10.48□□□□□ -0.73
PTCD3-207ENST00000467273 KCNC4Q03721 635 aa10.47□□□□□ -0.73
PTCD3-207ENST00000467273 NYAP1Q6ZVC0 841 aa10.47□□□□□ -0.73
PTCD3-207ENST00000467273 EIF4G3O43432 1585 aaKnown RBP10.47□□□□□ -0.73
PTCD3-207ENST00000467273 ABCC8Q09428 1581 aa10.47□□□□□ -0.73
PTCD3-207ENST00000467273 MFSD10Q14728 455 aa10.46□□□□□ -0.73
PTCD3-207ENST00000467273 TOP2AP11388 1531 aaKnown RBP10.45□□□□□ -0.74
PTCD3-207ENST00000467273 GTPBP6O43824 516 aaPredicted RBP10.45□□□□□ -0.74
PTCD3-207ENST00000467273 PHF14O94880 888 aa10.45□□□□□ -0.74
PTCD3-207ENST00000467273 CHD1O14646 1710 aa10.44□□□□□ -0.74
PTCD3-207ENST00000467273 TOPBP1Q92547 1522 aa10.43□□□□□ -0.74
PTCD3-207ENST00000467273 HPS5Q9UPZ3 1129 aa10.41□□□□□ -0.74
PTCD3-207ENST00000467273 C6orf132Q5T0Z8 1188 aa10.4□□□□□ -0.74
PTCD3-207ENST00000467273 RBM33Q96EV2 1170 aaKnown RBP10.4□□□□□ -0.74
PTCD3-207ENST00000467273 LRCH3Q96II8 777 aa10.4□□□□□ -0.74
PTCD3-207ENST00000467273 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.4□□□□□ -0.74
PTCD3-207ENST00000467273 TRIM6-TRIM34B2RNG4 842 aa10.39□□□□□ -0.75
PTCD3-207ENST00000467273 FAM98CQ17RN3 349 aaKnown RBP10.39□□□□□ -0.75
PTCD3-207ENST00000467273 TSR3Q9UJK0 312 aaKnown RBP10.39□□□□□ -0.75
PTCD3-207ENST00000467273 DNMBPQ6XZF7 1577 aa10.39□□□□□ -0.75
PTCD3-207ENST00000467273 TARBP1Q13395 1621 aaKnown RBP10.38□□□□□ -0.75
PTCD3-207ENST00000467273 EPAS1Q99814 870 aa10.38□□□□□ -0.75
PTCD3-207ENST00000467273 ONECUT3O60422 494 aaPredicted RBP10.37□□□□□ -0.75
PTCD3-207ENST00000467273 DPYSL4O14531 572 aa10.35□□□□□ -0.75
PTCD3-207ENST00000467273 LAPTM4AQ15012 233 aa10.35□□□□□ -0.75
PTCD3-207ENST00000467273 CADPS2Q86UW7 1296 aa10.35□□□□□ -0.75
PTCD3-207ENST00000467273 WDR97A6NE52 1622 aa10.35□□□□□ -0.75
PTCD3-207ENST00000467273 AQRO60306 1485 aaKnown RBP eCLIP10.35□□□□□ -0.751e-8■■■■■ 29.2
PTCD3-207ENST00000467273 CLASP1Q7Z460 1538 aa10.34□□□□□ -0.75
PTCD3-207ENST00000467273 GFRA3O60609 400 aa10.34□□□□□ -0.75
PTCD3-207ENST00000467273 DDX12PQ92771 950 aa10.33□□□□□ -0.76
PTCD3-207ENST00000467273 SYNJ1O43426 1573 aa10.32□□□□□ -0.76
PTCD3-207ENST00000467273 PPP4CP60510 307 aa10.3□□□□□ -0.76
PTCD3-207ENST00000467273 TRAF7Q6Q0C0 670 aa10.3□□□□□ -0.76
PTCD3-207ENST00000467273 CCDC88BA6NC98 1476 aa10.3□□□□□ -0.76
PTCD3-207ENST00000467273 POLA1P09884 1462 aaPredicted RBP10.3□□□□□ -0.76
PTCD3-207ENST00000467273 LCE2BO14633 110 aa10.29□□□□□ -0.76
PTCD3-207ENST00000467273 PACS2Q86VP3 889 aa10.29□□□□□ -0.76
PTCD3-207ENST00000467273 MAGI1Q96QZ7 1491 aaPredicted RBP10.29□□□□□ -0.76
PTCD3-207ENST00000467273 NBR1Q14596 966 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms