RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 VPS37DQ86XT2 251 aa13.87□□□□□ -0.19
SCN4A-201ENST00000435607 KLHL34Q8N239 644 aa13.87□□□□□ -0.19
SCN4A-201ENST00000435607 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.87□□□□□ -0.196e-9■■■■■ 134.6
SCN4A-201ENST00000435607 TCERG1O14776 1098 aaKnown RBP13.86□□□□□ -0.19
SCN4A-201ENST00000435607 SLC4A10Q6U841 1118 aa13.86□□□□□ -0.19
SCN4A-201ENST00000435607 H3BQV1 296 aa13.86□□□□□ -0.19
SCN4A-201ENST00000435607 IFFO2Q5TF58 517 aa13.86□□□□□ -0.19
SCN4A-201ENST00000435607 SMC4Q9NTJ3 1288 aa13.86□□□□□ -0.19
SCN4A-201ENST00000435607 EFCAB2Q5VUJ9 269 aa13.85□□□□□ -0.19
SCN4A-201ENST00000435607 WWC2Q6AWC2 1192 aa13.85□□□□□ -0.19
SCN4A-201ENST00000435607 AMER1Q5JTC6 1135 aaPredicted RBP13.85□□□□□ -0.19
SCN4A-201ENST00000435607 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.85□□□□□ -0.19
SCN4A-201ENST00000435607 FBXO3Q9UK99 471 aa13.85□□□□□ -0.19
SCN4A-201ENST00000435607 ANKRD20A12PQ8NF67 263 aa13.84□□□□□ -0.19
SCN4A-201ENST00000435607 B4GALNT3Q6L9W6 998 aa13.84□□□□□ -0.19
SCN4A-201ENST00000435607 FAM184AQ8NB25 1140 aa13.84□□□□□ -0.19
SCN4A-201ENST00000435607 IPO7O95373 1038 aaKnown RBP13.83□□□□□ -0.19
SCN4A-201ENST00000435607 NEXNQ0ZGT2 675 aa13.83□□□□□ -0.2
SCN4A-201ENST00000435607 FBXW7Q969H0 707 aa13.83□□□□□ -0.2
SCN4A-201ENST00000435607 TRIM29Q14134 588 aa13.83□□□□□ -0.2
SCN4A-201ENST00000435607 TTC5Q8N0Z6 440 aa13.83□□□□□ -0.2
SCN4A-201ENST00000435607 LTV1Q96GA3 475 aaPredicted RBP13.83□□□□□ -0.2
SCN4A-201ENST00000435607 ODF2Q5BJF6 829 aa13.83□□□□□ -0.2
SCN4A-201ENST00000435607 ST18O60284 1047 aa13.82□□□□□ -0.2
SCN4A-201ENST00000435607 CCAR1Q8IX12 1150 aaKnown RBP13.82□□□□□ -0.2
SCN4A-201ENST00000435607 DHX16O60231 1041 aaKnown RBP13.82□□□□□ -0.2
SCN4A-201ENST00000435607 HOOK1Q9UJC3 728 aaKnown RBP13.81□□□□□ -0.2
SCN4A-201ENST00000435607 ROCK2O75116 1388 aaKnown RBP13.8□□□□□ -0.2
SCN4A-201ENST00000435607 RBM33Q96EV2 1170 aaKnown RBP13.8□□□□□ -0.2
SCN4A-201ENST00000435607 RRP12Q5JTH9 1297 aaKnown RBP13.8□□□□□ -0.2
SCN4A-201ENST00000435607 GPS2Q13227 327 aa13.8□□□□□ -0.2
SCN4A-201ENST00000435607 CEP164Q9UPV0 1460 aa13.8□□□□□ -0.2
SCN4A-201ENST00000435607 WRNQ14191 1432 aaPredicted RBP eCLIP13.79□□□□□ -0.2
SCN4A-201ENST00000435607 PCMTD1Q96MG8 357 aaPredicted RBP13.79□□□□□ -0.2
SCN4A-201ENST00000435607 ATP6V1DQ9Y5K8 247 aa13.79□□□□□ -0.2
SCN4A-201ENST00000435607 GOLGA6L19H0YKK7 550 aa13.79□□□□□ -0.2
SCN4A-201ENST00000435607 RDXP35241 583 aaKnown RBP13.79□□□□□ -0.2
SCN4A-201ENST00000435607 PAF1Q8N7H5 531 aa13.78□□□□□ -0.2
SCN4A-201ENST00000435607 WASHC2CQ9Y4E1 1318 aa13.78□□□□□ -0.2
SCN4A-201ENST00000435607 CT47A1Q5JQC4 288 aaPredicted RBP13.78□□□□□ -0.2
SCN4A-201ENST00000435607 SF3B2Q13435 895 aaKnown RBP13.78□□□□□ -0.2
SCN4A-201ENST00000435607 TEFQ10587 303 aa13.78□□□□□ -0.2
SCN4A-201ENST00000435607 ERICH2A1L162 156 aa13.77□□□□□ -0.21
SCN4A-201ENST00000435607 RALBP1Q15311 655 aa13.77□□□□□ -0.21
SCN4A-201ENST00000435607 TRDNQ13061 729 aa13.76□□□□□ -0.21
SCN4A-201ENST00000435607 SYTL4Q96C24 671 aaPredicted RBP13.76□□□□□ -0.21
SCN4A-201ENST00000435607 CEP162Q5TB80 1403 aa13.76□□□□□ -0.21
SCN4A-201ENST00000435607 RUFY2Q8WXA3 655 aa13.74□□□□□ -0.21
SCN4A-201ENST00000435607 APPP05067 770 aa13.74□□□□□ -0.21
SCN4A-201ENST00000435607 BECN2A8MW95 431 aa13.74□□□□□ -0.21
SCN4A-201ENST00000435607 DDX58O95786 925 aaKnown RBP13.74□□□□□ -0.21
SCN4A-201ENST00000435607 CDR1P51861 262 aa13.74□□□□□ -0.21
SCN4A-201ENST00000435607 TIMELESSQ9UNS1 1208 aa13.74□□□□□ -0.21
SCN4A-201ENST00000435607 KIF3BO15066 747 aa13.73□□□□□ -0.21
SCN4A-201ENST00000435607 PKD2Q13563 968 aa13.73□□□□□ -0.21
SCN4A-201ENST00000435607 RTN4Q9NQC3 1192 aaKnown RBP13.73□□□□□ -0.21
SCN4A-201ENST00000435607 MFAP1P55081 439 aaKnown RBP13.72□□□□□ -0.21
SCN4A-201ENST00000435607 C9orf78Q9NZ63 289 aaPredicted RBP13.72□□□□□ -0.21
SCN4A-201ENST00000435607 ANKRD30AQ9BXX3 1397 aa13.71□□□□□ -0.21
SCN4A-201ENST00000435607 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.71□□□□□ -0.21
SCN4A-201ENST00000435607 COG3Q96JB2 828 aa13.71□□□□□ -0.21
SCN4A-201ENST00000435607 CPLX1O14810 134 aa13.71□□□□□ -0.22
SCN4A-201ENST00000435607 CCAR2Q8N163 923 aaKnown RBP13.71□□□□□ -0.22
SCN4A-201ENST00000435607 TMEM132AQ24JP5 1023 aa13.7□□□□□ -0.22
SCN4A-201ENST00000435607 RSPH4AQ5TD94 716 aa13.7□□□□□ -0.22
SCN4A-201ENST00000435607 CCDC180Q9P1Z9 1646 aa13.7□□□□□ -0.22
SCN4A-201ENST00000435607 RCAN3Q9UKA8 241 aa13.7□□□□□ -0.22
SCN4A-201ENST00000435607 DIAPH3Q9NSV4 1193 aa13.7□□□□□ -0.22
SCN4A-201ENST00000435607 MCTP1Q6DN14 999 aa13.7□□□□□ -0.22
SCN4A-201ENST00000435607 NOL8Q76FK4 1167 aaKnown RBP13.7□□□□□ -0.22
SCN4A-201ENST00000435607 ARHGAP35Q9NRY4 1499 aa13.7□□□□□ -0.22
SCN4A-201ENST00000435607 EPS15P42566 896 aa13.69□□□□□ -0.22
SCN4A-201ENST00000435607 PSME1Q06323 249 aa13.69□□□□□ -0.22
SCN4A-201ENST00000435607 SAMD1Q6SPF0 538 aaPredicted RBP13.69□□□□□ -0.22
SCN4A-201ENST00000435607 RILPL2Q969X0 211 aa13.69□□□□□ -0.22
SCN4A-201ENST00000435607 GZF1Q9H116 711 aaPredicted RBP13.69□□□□□ -0.22
SCN4A-201ENST00000435607 UACAQ9BZF9 1416 aa13.69□□□□□ -0.22
SCN4A-201ENST00000435607 NUTM2FA1L443 756 aa13.69□□□□□ -0.22
SCN4A-201ENST00000435607 ATF3P18847 181 aa13.68□□□□□ -0.22
SCN4A-201ENST00000435607 CCDC173Q0VFZ6 552 aa13.68□□□□□ -0.22
SCN4A-201ENST00000435607 SAFBQ15424 915 aaKnown RBP eCLIP13.68□□□□□ -0.22
SCN4A-201ENST00000435607 NFXL1Q6ZNB6 911 aa13.68□□□□□ -0.22
SCN4A-201ENST00000435607 ZKSCAN1P17029 563 aaPredicted RBP13.68□□□□□ -0.22
SCN4A-201ENST00000435607 SIN3AQ96ST3 1273 aa13.68□□□□□ -0.22
SCN4A-201ENST00000435607 NUP155O75694 1391 aa13.68□□□□□ -0.22
SCN4A-201ENST00000435607 CALRP27797 417 aaKnown RBP13.67□□□□□ -0.22
SCN4A-201ENST00000435607 PATL2C9JE40 543 aaKnown RBP13.67□□□□□ -0.22
SCN4A-201ENST00000435607 ZFYVE27Q5T4F4 411 aa13.67□□□□□ -0.22
SCN4A-201ENST00000435607 BRMS1Q9HCU9 246 aa13.67□□□□□ -0.22
SCN4A-201ENST00000435607 GOLGA6L3A6NEY3 463 aa13.67□□□□□ -0.22
SCN4A-201ENST00000435607 RNF20Q5VTR2 975 aa13.67□□□□□ -0.22
SCN4A-201ENST00000435607 CENPJQ9HC77 1338 aaPredicted RBP13.66□□□□□ -0.22
SCN4A-201ENST00000435607 NGEFQ8N5V2 710 aa13.66□□□□□ -0.22
SCN4A-201ENST00000435607 IKQ13123 557 aaPredicted RBP13.66□□□□□ -0.22
SCN4A-201ENST00000435607 PHLDB1Q86UU1 1377 aa13.66□□□□□ -0.22
SCN4A-201ENST00000435607 HMGB2P26583 209 aaKnown RBP13.66□□□□□ -0.22
SCN4A-201ENST00000435607 SLKQ9H2G2 1235 aaPredicted RBP13.65□□□□□ -0.22
SCN4A-201ENST00000435607 CARMIL1Q5VZK9 1371 aa13.65□□□□□ -0.22
SCN4A-201ENST00000435607 MYO6Q9UM54 1294 aa13.65□□□□□ -0.22
SCN4A-201ENST00000435607 XBP1P17861 261 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms