RNA–Protein interactions for RNA: ENST00000429456.1

LINC01238-203, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2 BASIC

Gene LINC01238, Length 2,170 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-203ENST00000429456 PREX2Q70Z35 1606 aa15.61■□□□□ 0.09
LINC01238-203ENST00000429456 PNISRQ8TF01 805 aaKnown RBP15.6■□□□□ 0.09
LINC01238-203ENST00000429456 RNF123Q5XPI4 1314 aa15.6■□□□□ 0.09
LINC01238-203ENST00000429456 E9PCH4 1651 aa15.6■□□□□ 0.09
LINC01238-203ENST00000429456 FAM135AQ9P2D6 1515 aa15.59■□□□□ 0.09
LINC01238-203ENST00000429456 ST20-MTHFSA0A0A6YYL1 179 aa15.58■□□□□ 0.08
LINC01238-203ENST00000429456 CNGB1Q14028 1251 aaPredicted RBP15.58■□□□□ 0.08
LINC01238-203ENST00000429456 DCAF11Q8TEB1 546 aa15.58■□□□□ 0.08
LINC01238-203ENST00000429456 KDM2AQ9Y2K7 1162 aa15.58■□□□□ 0.08
LINC01238-203ENST00000429456 RSPH4AQ5TD94 716 aa15.58■□□□□ 0.08
LINC01238-203ENST00000429456 KTN1Q86UP2 1357 aaKnown RBP15.57■□□□□ 0.08
LINC01238-203ENST00000429456 TMC1Q8TDI8 760 aa15.56■□□□□ 0.08
LINC01238-203ENST00000429456 LRPPRCP42704 1394 aaKnown RBP15.56■□□□□ 0.08
LINC01238-203ENST00000429456 BRD4O60885 1362 aaPredicted RBP15.55■□□□□ 0.08
LINC01238-203ENST00000429456 MAST1Q9Y2H9 1570 aa15.55■□□□□ 0.08
LINC01238-203ENST00000429456 TRPM1Q7Z4N2 1603 aa15.55■□□□□ 0.08
LINC01238-203ENST00000429456 RALBP1Q15311 655 aa15.55■□□□□ 0.08
LINC01238-203ENST00000429456 UNC13BO14795 1591 aa15.54■□□□□ 0.08
LINC01238-203ENST00000429456 MYBBP1AQ9BQG0 1328 aaKnown RBP15.54■□□□□ 0.08
LINC01238-203ENST00000429456 PRAG1Q86YV5 1406 aa15.54■□□□□ 0.08
LINC01238-203ENST00000429456 CCDC144AA2RUR9 1427 aa15.52■□□□□ 0.08
LINC01238-203ENST00000429456 SYCP2Q9BX26 1530 aa15.52■□□□□ 0.07
LINC01238-203ENST00000429456 PLA2R1Q13018 1463 aa15.51■□□□□ 0.07
LINC01238-203ENST00000429456 TTC37Q6PGP7 1564 aa15.5■□□□□ 0.07
LINC01238-203ENST00000429456 GPRASP1Q5JY77 1395 aa15.5■□□□□ 0.07
LINC01238-203ENST00000429456 LAMC1P11047 1609 aa15.5■□□□□ 0.07
LINC01238-203ENST00000429456 PLXNC1O60486 1568 aa15.48■□□□□ 0.07
LINC01238-203ENST00000429456 ARHGAP5Q13017 1502 aa15.48■□□□□ 0.07
LINC01238-203ENST00000429456 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.48■□□□□ 0.07
LINC01238-203ENST00000429456 IQGAP3Q86VI3 1631 aa15.48■□□□□ 0.07
LINC01238-203ENST00000429456 PARD3Q8TEW0 1356 aa15.48■□□□□ 0.07
LINC01238-203ENST00000429456 A2MP01023 1474 aa15.48■□□□□ 0.07
LINC01238-203ENST00000429456 SHROOM2Q13796 1616 aa15.47■□□□□ 0.07
LINC01238-203ENST00000429456 CHD1O14646 1710 aa15.46■□□□□ 0.07
LINC01238-203ENST00000429456 PRDM15P57071 1507 aaPredicted RBP15.46■□□□□ 0.07
LINC01238-203ENST00000429456 MYO5CQ9NQX4 1742 aa15.46■□□□□ 0.06
LINC01238-203ENST00000429456 PLEKHH2Q8IVE3 1493 aa15.46■□□□□ 0.06
LINC01238-203ENST00000429456 NBPF1Q3BBV0 1214 aa15.45■□□□□ 0.06
LINC01238-203ENST00000429456 SENP3-EIF4A1A0A087X0R7 540 aa15.45■□□□□ 0.06
LINC01238-203ENST00000429456 NLRP13Q86W25 1043 aa15.45■□□□□ 0.06
LINC01238-203ENST00000429456 CCDC136Q96JN2 1154 aa15.45■□□□□ 0.06
LINC01238-203ENST00000429456 COL17A1Q9UMD9 1497 aaPredicted RBP15.44■□□□□ 0.06
LINC01238-203ENST00000429456 PER1O15534 1290 aaPredicted RBP15.44■□□□□ 0.06
LINC01238-203ENST00000429456 ATP10AO60312 1499 aa15.44■□□□□ 0.06
LINC01238-203ENST00000429456 RGL3Q3MIN7 710 aa15.43■□□□□ 0.06
LINC01238-203ENST00000429456 EIF2AK4Q9P2K8 1649 aaKnown RBP15.43■□□□□ 0.06
LINC01238-203ENST00000429456 MAGI2Q86UL8 1455 aa15.43■□□□□ 0.06
LINC01238-203ENST00000429456 DUOX2Q9NRD8 1548 aa15.43■□□□□ 0.06
LINC01238-203ENST00000429456 ABCC2Q92887 1545 aa15.42■□□□□ 0.06
LINC01238-203ENST00000429456 TESK2Q96S53 571 aa15.42■□□□□ 0.06
LINC01238-203ENST00000429456 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.42■□□□□ 0.06
LINC01238-203ENST00000429456 WASHC2CQ9Y4E1 1318 aa15.41■□□□□ 0.06
LINC01238-203ENST00000429456 DISP3Q9P2K9 1392 aa15.4■□□□□ 0.06
LINC01238-203ENST00000429456 ERBINQ96RT1 1412 aa15.4■□□□□ 0.06
LINC01238-203ENST00000429456 PDE3BQ13370 1112 aa15.39■□□□□ 0.05
LINC01238-203ENST00000429456 INSRP06213 1382 aa15.39■□□□□ 0.05
LINC01238-203ENST00000429456 RRP1P56182 461 aaKnown RBP15.39■□□□□ 0.05
LINC01238-203ENST00000429456 RNF17Q9BXT8 1623 aaKnown RBP15.38■□□□□ 0.05
LINC01238-203ENST00000429456 ZMYM4Q5VZL5 1548 aa15.37■□□□□ 0.05
LINC01238-203ENST00000429456 ERCC6L2Q5T890 1561 aa15.37■□□□□ 0.05
LINC01238-203ENST00000429456 PLPPR3Q6T4P5 718 aa15.36■□□□□ 0.05
LINC01238-203ENST00000429456 PLCH2O75038 1416 aa15.36■□□□□ 0.05
LINC01238-203ENST00000429456 RCAN3Q9UKA8 241 aa15.36■□□□□ 0.05
LINC01238-203ENST00000429456 BLMP54132 1417 aaPredicted RBP15.35■□□□□ 0.05
LINC01238-203ENST00000429456 TMF1P82094 1093 aa15.34■□□□□ 0.05
LINC01238-203ENST00000429456 PANK3Q9H999 370 aa15.34■□□□□ 0.05
LINC01238-203ENST00000429456 ABCC1P33527 1531 aa15.33■□□□□ 0.04
LINC01238-203ENST00000429456 CC2D1BQ5T0F9 858 aaKnown RBP15.33■□□□□ 0.04
LINC01238-203ENST00000429456 NOP58Q9Y2X3 529 aaKnown RBP15.33■□□□□ 0.04
LINC01238-203ENST00000429456 EXOC6Q8TAG9 804 aa15.32■□□□□ 0.04
LINC01238-203ENST00000429456 ZCCHC11Q5TAX3 1644 aaKnown RBP15.32■□□□□ 0.04
LINC01238-203ENST00000429456 EFCAB2Q5VUJ9 269 aa15.32■□□□□ 0.04
LINC01238-203ENST00000429456 SALL2Q9Y467 1007 aaPredicted RBP15.32■□□□□ 0.04
LINC01238-203ENST00000429456 MADDQ8WXG6 1647 aa15.31■□□□□ 0.04
LINC01238-203ENST00000429456 TRAPPC8Q9Y2L5 1435 aa15.3■□□□□ 0.04
LINC01238-203ENST00000429456 UHRF1BP1LA0JNW5 1464 aa15.3■□□□□ 0.04
LINC01238-203ENST00000429456 IQGAP1P46940 1657 aa15.3■□□□□ 0.04
LINC01238-203ENST00000429456 CDCA7LQ96GN5 454 aa15.29■□□□□ 0.04
LINC01238-203ENST00000429456 SENP3Q9H4L4 574 aaPredicted RBP15.29■□□□□ 0.04
LINC01238-203ENST00000429456 MYT1LQ9UL68 1186 aa15.29■□□□□ 0.04
LINC01238-203ENST00000429456 WDR7Q9Y4E6 1490 aa15.28■□□□□ 0.04
LINC01238-203ENST00000429456 SPHKAPQ2M3C7 1700 aa15.27■□□□□ 0.04
LINC01238-203ENST00000429456 TRPM2O94759 1503 aa15.27■□□□□ 0.04
LINC01238-203ENST00000429456 PAK3O75914 559 aaPredicted RBP15.27■□□□□ 0.04
LINC01238-203ENST00000429456 ANP32AP39687 249 aaKnown RBP15.27■□□□□ 0.04
LINC01238-203ENST00000429456 IPO9Q96P70 1041 aaKnown RBP15.27■□□□□ 0.04
LINC01238-203ENST00000429456 CEP152O94986 1710 aa15.27■□□□□ 0.03
LINC01238-203ENST00000429456 RTEL1-TNFRSF6BF6WH68 1400 aa15.27■□□□□ 0.03
LINC01238-203ENST00000429456 TCERG1O14776 1098 aaKnown RBP15.25■□□□□ 0.03
LINC01238-203ENST00000429456 PTPRTO14522 1441 aa15.25■□□□□ 0.03
LINC01238-203ENST00000429456 ARAP3Q8WWN8 1544 aa15.25■□□□□ 0.03
LINC01238-203ENST00000429456 STAC3Q96MF2 364 aa15.25■□□□□ 0.03
LINC01238-203ENST00000429456 DEPDC5O75140 1603 aa15.24■□□□□ 0.03
LINC01238-203ENST00000429456 ZFYVE16Q7Z3T8 1539 aa15.24■□□□□ 0.03
LINC01238-203ENST00000429456 SCAPERQ9BY12 1400 aa15.24■□□□□ 0.03
LINC01238-203ENST00000429456 CLASP1Q7Z460 1538 aa15.24■□□□□ 0.03
LINC01238-203ENST00000429456 SPAG9O60271 1321 aaKnown RBP15.24■□□□□ 0.03
LINC01238-203ENST00000429456 SYNMO15061 1565 aa15.23■□□□□ 0.03
LINC01238-203ENST00000429456 SCAF11Q99590 1463 aaKnown RBP15.23■□□□□ 0.03
LINC01238-203ENST00000429456 CLTCL1P53675 1640 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms