RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 TCOF1Q13428 1488 aaKnown RBP11.43□□□□□ -0.58
SYNE1-211ENST00000413186 CFAP53Q96M91 514 aa11.43□□□□□ -0.58
SYNE1-211ENST00000413186 ABCC10Q5T3U5 1492 aa11.43□□□□□ -0.58
SYNE1-211ENST00000413186 GTF3C3Q9Y5Q9 886 aa11.43□□□□□ -0.58
SYNE1-211ENST00000413186 SAFB2Q14151 953 aaKnown RBP eCLIP11.41□□□□□ -0.58
SYNE1-211ENST00000413186 NUTM2DQ5VT03 806 aaPredicted RBP11.41□□□□□ -0.58
SYNE1-211ENST00000413186 SCAF1Q9H7N4 1312 aaKnown RBP11.41□□□□□ -0.58
SYNE1-211ENST00000413186 SYCP2Q9BX26 1530 aa11.41□□□□□ -0.58
SYNE1-211ENST00000413186 HDGFL2Q7Z4V5 671 aaPredicted RBP11.4□□□□□ -0.58
SYNE1-211ENST00000413186 THEMISQ8N1K5 641 aaPredicted RBP11.4□□□□□ -0.59
SYNE1-211ENST00000413186 FAM9BQ8IZU0 186 aa11.39□□□□□ -0.59
SYNE1-211ENST00000413186 RTEL1-TNFRSF6BF6WH68 1400 aa11.39□□□□□ -0.59
SYNE1-211ENST00000413186 SHANK2Q9UPX8 1470 aa11.39□□□□□ -0.59
SYNE1-211ENST00000413186 CLASP1Q7Z460 1538 aa11.38□□□□□ -0.59
SYNE1-211ENST00000413186 DUOX2Q9NRD8 1548 aa11.38□□□□□ -0.59
SYNE1-211ENST00000413186 RPGRIP1LQ68CZ1 1315 aa11.38□□□□□ -0.59
SYNE1-211ENST00000413186 HAP1P54257 671 aaPredicted RBP11.38□□□□□ -0.59
SYNE1-211ENST00000413186 NEO1Q92859 1461 aa11.38□□□□□ -0.59
SYNE1-211ENST00000413186 ERBINQ96RT1 1412 aa11.37□□□□□ -0.59
SYNE1-211ENST00000413186 TRAK1Q9UPV9 953 aa11.37□□□□□ -0.59
SYNE1-211ENST00000413186 A2MP01023 1474 aa11.37□□□□□ -0.59
SYNE1-211ENST00000413186 TRAPPC8Q9Y2L5 1435 aa11.37□□□□□ -0.59
SYNE1-211ENST00000413186 HNRNPUQ00839 825 aaKnown RBP eCLIP11.36□□□□□ -0.59
SYNE1-211ENST00000413186 TERF2IPQ9NYB0 399 aa11.36□□□□□ -0.59
SYNE1-211ENST00000413186 ANKRD30BQ9BXX2 1392 aa11.35□□□□□ -0.59
SYNE1-211ENST00000413186 NUDCQ9Y266 331 aa11.35□□□□□ -0.59
SYNE1-211ENST00000413186 LMOD2Q6P5Q4 547 aa11.34□□□□□ -0.59
SYNE1-211ENST00000413186 ST20-MTHFSA0A0A6YYL1 179 aa11.34□□□□□ -0.59
SYNE1-211ENST00000413186 MIER1Q8N108 512 aa11.34□□□□□ -0.59
SYNE1-211ENST00000413186 ERCC6L2Q5T890 1561 aa11.34□□□□□ -0.59
SYNE1-211ENST00000413186 USP47Q96K76 1375 aa11.34□□□□□ -0.59
SYNE1-211ENST00000413186 TXNDC2Q86VQ3 553 aa11.34□□□□□ -0.59
SYNE1-211ENST00000413186 EVC2Q86UK5 1308 aa11.33□□□□□ -0.6
SYNE1-211ENST00000413186 CFAP74Q9C0B2 1584 aa11.33□□□□□ -0.6
SYNE1-211ENST00000413186 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.32□□□□□ -0.6
SYNE1-211ENST00000413186 ZBTB7CA1YPR0 619 aa11.32□□□□□ -0.6
SYNE1-211ENST00000413186 CANXP27824 592 aaKnown RBP11.32□□□□□ -0.6
SYNE1-211ENST00000413186 PTPRKQ15262 1439 aa11.32□□□□□ -0.6
SYNE1-211ENST00000413186 DNAJC5Q9H3Z4 198 aa11.31□□□□□ -0.6
SYNE1-211ENST00000413186 ZCCHC11Q5TAX3 1644 aaKnown RBP11.31□□□□□ -0.6
SYNE1-211ENST00000413186 AEBP2Q6ZN18 517 aaPredicted RBP11.31□□□□□ -0.6
SYNE1-211ENST00000413186 MAPKBP1O60336 1514 aa11.31□□□□□ -0.6
SYNE1-211ENST00000413186 DNMT1P26358 1616 aaKnown RBP11.31□□□□□ -0.6
SYNE1-211ENST00000413186 MORC1Q86VD1 984 aa11.31□□□□□ -0.6
SYNE1-211ENST00000413186 MAGI3Q5TCQ9 1506 aa11.31□□□□□ -0.6
SYNE1-211ENST00000413186 CENPJQ9HC77 1338 aaPredicted RBP11.3□□□□□ -0.6
SYNE1-211ENST00000413186 KTN1Q86UP2 1357 aaKnown RBP11.3□□□□□ -0.6
SYNE1-211ENST00000413186 MYO5CQ9NQX4 1742 aa11.3□□□□□ -0.6
SYNE1-211ENST00000413186 PPM1GO15355 546 aaPredicted RBP11.3□□□□□ -0.6
SYNE1-211ENST00000413186 CC2D1BQ5T0F9 858 aaKnown RBP11.3□□□□□ -0.6
SYNE1-211ENST00000413186 ANKLE2Q86XL3 938 aa11.3□□□□□ -0.6
SYNE1-211ENST00000413186 PNNQ9H307 717 aaKnown RBP11.29□□□□□ -0.6
SYNE1-211ENST00000413186 PLEKHG5O94827 1062 aa11.29□□□□□ -0.6
SYNE1-211ENST00000413186 ADGRL2O95490 1459 aa11.29□□□□□ -0.6
SYNE1-211ENST00000413186 RALBP1Q15311 655 aa11.28□□□□□ -0.6
SYNE1-211ENST00000413186 NGDNQ8NEJ9 315 aaKnown RBP11.28□□□□□ -0.6
SYNE1-211ENST00000413186 ATP10AO60312 1499 aa11.27□□□□□ -0.6
SYNE1-211ENST00000413186 ATP7AQ04656 1500 aa11.27□□□□□ -0.6
SYNE1-211ENST00000413186 CFAP70Q5T0N1 1121 aa11.27□□□□□ -0.61
SYNE1-211ENST00000413186 SHROOM2Q13796 1616 aa11.27□□□□□ -0.61
SYNE1-211ENST00000413186 ARHGEF5Q12774 1597 aa11.27□□□□□ -0.61
SYNE1-211ENST00000413186 CCER2I3L3R5 266 aa11.26□□□□□ -0.61
SYNE1-211ENST00000413186 MINK1Q8N4C8 1332 aaPredicted RBP11.26□□□□□ -0.61
SYNE1-211ENST00000413186 TNNT2P45379 298 aaPredicted RBP11.25□□□□□ -0.61
SYNE1-211ENST00000413186 MAPK8IP3Q9UPT6 1336 aa11.25□□□□□ -0.61
SYNE1-211ENST00000413186 PAK3O75914 559 aaPredicted RBP11.25□□□□□ -0.61
SYNE1-211ENST00000413186 IDI1Q13907 227 aa11.25□□□□□ -0.61
SYNE1-211ENST00000413186 SALL2Q9Y467 1007 aaPredicted RBP11.25□□□□□ -0.61
SYNE1-211ENST00000413186 ARAP3Q8WWN8 1544 aa11.24□□□□□ -0.61
SYNE1-211ENST00000413186 CNTLNQ9NXG0 1405 aa11.24□□□□□ -0.61
SYNE1-211ENST00000413186 TNRQ92752 1358 aa11.23□□□□□ -0.61
SYNE1-211ENST00000413186 TMEM132EQ6IEE7 984 aa11.23□□□□□ -0.61
SYNE1-211ENST00000413186 FBXO31Q5XUX0 539 aaPredicted RBP11.23□□□□□ -0.61
SYNE1-211ENST00000413186 ZBTB47Q9UFB7 747 aaPredicted RBP11.23□□□□□ -0.61
SYNE1-211ENST00000413186 MAGI2Q86UL8 1455 aa11.22□□□□□ -0.61
SYNE1-211ENST00000413186 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.22□□□□□ -0.61
SYNE1-211ENST00000413186 RPRD2Q5VT52 1461 aaKnown RBP11.22□□□□□ -0.61
SYNE1-211ENST00000413186 MBD5Q9P267 1494 aa11.22□□□□□ -0.61
SYNE1-211ENST00000413186 PREX2Q70Z35 1606 aa11.22□□□□□ -0.61
SYNE1-211ENST00000413186 TTC37Q6PGP7 1564 aa11.22□□□□□ -0.61
SYNE1-211ENST00000413186 FAM135AQ9P2D6 1515 aa11.22□□□□□ -0.61
SYNE1-211ENST00000413186 U2SURPO15042 1029 aaKnown RBP11.21□□□□□ -0.61
SYNE1-211ENST00000413186 ZFYVE16Q7Z3T8 1539 aa11.21□□□□□ -0.62
SYNE1-211ENST00000413186 CEBPAP49715 358 aaPredicted RBP11.2□□□□□ -0.62
SYNE1-211ENST00000413186 CGNL1Q0VF96 1302 aa11.2□□□□□ -0.62
SYNE1-211ENST00000413186 ATF3P18847 181 aa11.2□□□□□ -0.62
SYNE1-211ENST00000413186 PANK3Q9H999 370 aa11.2□□□□□ -0.62
SYNE1-211ENST00000413186 NBPF8Q3BBV2 869 aa11.2□□□□□ -0.62
SYNE1-211ENST00000413186 ABCC1P33527 1531 aa11.2□□□□□ -0.62
SYNE1-211ENST00000413186 NUTM2FA1L443 756 aa11.2□□□□□ -0.62
SYNE1-211ENST00000413186 ADCY10Q96PN6 1610 aa11.2□□□□□ -0.62
SYNE1-211ENST00000413186 MLH3Q9UHC1 1453 aa11.2□□□□□ -0.62
SYNE1-211ENST00000413186 RIMBP3CA6NJZ7 1639 aa11.19□□□□□ -0.62
SYNE1-211ENST00000413186 RIMBP3BA6NNM3 1639 aa11.19□□□□□ -0.62
SYNE1-211ENST00000413186 RIMBP3Q9UFD9 1639 aa11.19□□□□□ -0.62
SYNE1-211ENST00000413186 NBPF1Q3BBV0 1214 aa11.19□□□□□ -0.62
SYNE1-211ENST00000413186 SOX12O15370 315 aa11.19□□□□□ -0.62
SYNE1-211ENST00000413186 PROSER2Q86WR7 435 aaPredicted RBP11.19□□□□□ -0.62
SYNE1-211ENST00000413186 NLRP13Q86W25 1043 aa11.19□□□□□ -0.62
SYNE1-211ENST00000413186 SAMD9LQ8IVG5 1584 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms