RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 NUDCQ9Y266 331 aa13.26□□□□□ -0.29
PTCHD4-202ENST00000398738 HFM1A2PYH4 1435 aa13.24□□□□□ -0.29
PTCHD4-202ENST00000398738 FGD5Q6ZNL6 1462 aa13.24□□□□□ -0.29
PTCHD4-202ENST00000398738 FMN1Q68DA7 1419 aa13.24□□□□□ -0.29
PTCHD4-202ENST00000398738 EIF4G3O43432 1585 aaKnown RBP13.24□□□□□ -0.29
PTCHD4-202ENST00000398738 MAP3K1Q13233 1512 aa13.23□□□□□ -0.29
PTCHD4-202ENST00000398738 SPDYE1Q8NFV5 336 aaPredicted RBP13.23□□□□□ -0.29
PTCHD4-202ENST00000398738 EXOC6Q8TAG9 804 aa13.23□□□□□ -0.29
PTCHD4-202ENST00000398738 FAM212AQ96EL1 285 aa13.23□□□□□ -0.29
PTCHD4-202ENST00000398738 PCDHB8Q9UN66 801 aa13.22□□□□□ -0.29
PTCHD4-202ENST00000398738 PCDHB13Q9Y5F0 798 aa13.22□□□□□ -0.29
PTCHD4-202ENST00000398738 ABCA5Q8WWZ7 1642 aa13.21□□□□□ -0.29
PTCHD4-202ENST00000398738 SLC4A3P48751 1232 aa13.2□□□□□ -0.3
PTCHD4-202ENST00000398738 ABCA10Q8WWZ4 1543 aa13.2□□□□□ -0.3
PTCHD4-202ENST00000398738 EIF5BO60841 1220 aaKnown RBP13.2□□□□□ -0.3
PTCHD4-202ENST00000398738 GSE1Q14687 1217 aa13.19□□□□□ -0.3
PTCHD4-202ENST00000398738 ZNF608Q9ULD9 1512 aaPredicted RBP13.19□□□□□ -0.3
PTCHD4-202ENST00000398738 RAD54L2Q9Y4B4 1467 aa13.18□□□□□ -0.3
PTCHD4-202ENST00000398738 CASKIN1Q8WXD9 1431 aa13.18□□□□□ -0.3
PTCHD4-202ENST00000398738 PBRM1Q86U86 1689 aa13.18□□□□□ -0.3
PTCHD4-202ENST00000398738 PLIN1O60240 522 aa13.17□□□□□ -0.3
PTCHD4-202ENST00000398738 PDE4AP27815 886 aa13.17□□□□□ -0.3
PTCHD4-202ENST00000398738 DNAJC5Q9H3Z4 198 aa13.17□□□□□ -0.3
PTCHD4-202ENST00000398738 PTPN23Q9H3S7 1636 aa13.16□□□□□ -0.3
PTCHD4-202ENST00000398738 NCOA2Q15596 1464 aa13.16□□□□□ -0.3
PTCHD4-202ENST00000398738 BRPF3Q9ULD4 1205 aa13.16□□□□□ -0.3
PTCHD4-202ENST00000398738 NCOA1Q15788 1441 aa13.16□□□□□ -0.3
PTCHD4-202ENST00000398738 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.15□□□□□ -0.3
PTCHD4-202ENST00000398738 KDM5BQ9UGL1 1544 aa13.15□□□□□ -0.3
PTCHD4-202ENST00000398738 MYOM3Q5VTT5 1437 aa13.15□□□□□ -0.3
PTCHD4-202ENST00000398738 FYCO1Q9BQS8 1478 aa13.15□□□□□ -0.3
PTCHD4-202ENST00000398738 SMG6Q86US8 1419 aaKnown RBP13.14□□□□□ -0.31
PTCHD4-202ENST00000398738 AKT1S1Q96B36 256 aa13.13□□□□□ -0.31
PTCHD4-202ENST00000398738 PNISRQ8TF01 805 aaKnown RBP13.12□□□□□ -0.31
PTCHD4-202ENST00000398738 ZNF644Q9H582 1327 aaPredicted RBP13.12□□□□□ -0.31
PTCHD4-202ENST00000398738 ZNF777Q9ULD5 760 aaPredicted RBP13.12□□□□□ -0.31
PTCHD4-202ENST00000398738 RRP1P56182 461 aaKnown RBP13.11□□□□□ -0.31
PTCHD4-202ENST00000398738 DAXXQ9UER7 740 aaPredicted RBP13.11□□□□□ -0.31
PTCHD4-202ENST00000398738 RCAN3Q9UKA8 241 aa13.11□□□□□ -0.31
PTCHD4-202ENST00000398738 TDRD9Q8NDG6 1382 aaKnown RBP13.11□□□□□ -0.31
PTCHD4-202ENST00000398738 CDCA7LQ96GN5 454 aa13.11□□□□□ -0.31
PTCHD4-202ENST00000398738 VGFO15240 615 aaPredicted RBP13.09□□□□□ -0.31
PTCHD4-202ENST00000398738 CFAP43Q8NDM7 1665 aa13.09□□□□□ -0.31
PTCHD4-202ENST00000398738 KCNV2Q8TDN2 545 aa13.09□□□□□ -0.31
PTCHD4-202ENST00000398738 CHD1O14646 1710 aa13.09□□□□□ -0.31
PTCHD4-202ENST00000398738 TCERG1O14776 1098 aaKnown RBP13.08□□□□□ -0.32
PTCHD4-202ENST00000398738 DENND4BO75064 1496 aaPredicted RBP13.08□□□□□ -0.32
PTCHD4-202ENST00000398738 PPP1R37O75864 691 aa13.08□□□□□ -0.32
PTCHD4-202ENST00000398738 BACH2Q9BYV9 841 aa13.07□□□□□ -0.32
PTCHD4-202ENST00000398738 CARD11Q9BXL7 1154 aa13.07□□□□□ -0.32
PTCHD4-202ENST00000398738 MAGI1Q96QZ7 1491 aaPredicted RBP13.06□□□□□ -0.32
PTCHD4-202ENST00000398738 USP47Q96K76 1375 aa13.06□□□□□ -0.32
PTCHD4-202ENST00000398738 RNF123Q5XPI4 1314 aa13.06□□□□□ -0.32
PTCHD4-202ENST00000398738 GRIN2BQ13224 1484 aa13.05□□□□□ -0.32
PTCHD4-202ENST00000398738 PPM1GO15355 546 aaPredicted RBP13.05□□□□□ -0.32
PTCHD4-202ENST00000398738 KDM6BO15054 1643 aa13.05□□□□□ -0.32
PTCHD4-202ENST00000398738 DHX29Q7Z478 1369 aaKnown RBP13.04□□□□□ -0.32
PTCHD4-202ENST00000398738 GAPVD1Q14C86 1478 aa13.04□□□□□ -0.32
PTCHD4-202ENST00000398738 ST20-MTHFSA0A0A6YYL1 179 aa13.04□□□□□ -0.32
PTCHD4-202ENST00000398738 ANKRD30BQ9BXX2 1392 aa13.04□□□□□ -0.32
PTCHD4-202ENST00000398738 ADAMTS12P58397 1594 aa13.04□□□□□ -0.32
PTCHD4-202ENST00000398738 CC2D1BQ5T0F9 858 aaKnown RBP13.03□□□□□ -0.32
PTCHD4-202ENST00000398738 CRBNQ96SW2 442 aa13.03□□□□□ -0.32
PTCHD4-202ENST00000398738 ARXQ96QS3 562 aa13.03□□□□□ -0.32
PTCHD4-202ENST00000398738 NFKBIBQ15653 356 aa13.02□□□□□ -0.32
PTCHD4-202ENST00000398738 FRAT1Q92837 279 aaPredicted RBP13.02□□□□□ -0.33
PTCHD4-202ENST00000398738 RGS3P49796 1198 aa13.01□□□□□ -0.33
PTCHD4-202ENST00000398738 SNAPC4Q5SXM2 1469 aa13.01□□□□□ -0.33
PTCHD4-202ENST00000398738 RBM42Q9BTD8 480 aaKnown RBP13□□□□□ -0.33
PTCHD4-202ENST00000398738 MFRPQ9BY79 579 aa13□□□□□ -0.33
PTCHD4-202ENST00000398738 TULP1O00294 542 aaPredicted RBP13□□□□□ -0.33
PTCHD4-202ENST00000398738 C20orf194Q5TEA3 1177 aa13□□□□□ -0.33
PTCHD4-202ENST00000398738 USP35Q9P2H5 1018 aa13□□□□□ -0.33
PTCHD4-202ENST00000398738 SPATA31E1Q6ZUB1 1445 aa12.99□□□□□ -0.33
PTCHD4-202ENST00000398738 DCAF11Q8TEB1 546 aa12.99□□□□□ -0.33
PTCHD4-202ENST00000398738 CLASP1Q7Z460 1538 aa12.98□□□□□ -0.33
PTCHD4-202ENST00000398738 SYNJ2O15056 1496 aa12.98□□□□□ -0.33
PTCHD4-202ENST00000398738 CUL7Q14999 1698 aa12.98□□□□□ -0.33
PTCHD4-202ENST00000398738 EFCAB5A4FU69 1503 aa12.98□□□□□ -0.33
PTCHD4-202ENST00000398738 RGL3Q3MIN7 710 aa12.98□□□□□ -0.33
PTCHD4-202ENST00000398738 RPRD2Q5VT52 1461 aaKnown RBP12.97□□□□□ -0.33
PTCHD4-202ENST00000398738 FRAT2O75474 233 aaPredicted RBP12.96□□□□□ -0.33
PTCHD4-202ENST00000398738 MYBBP1AQ9BQG0 1328 aaKnown RBP12.96□□□□□ -0.33
PTCHD4-202ENST00000398738 DDRGK1Q96HY6 314 aa12.96□□□□□ -0.33
PTCHD4-202ENST00000398738 MAGI3Q5TCQ9 1506 aa12.95□□□□□ -0.34
PTCHD4-202ENST00000398738 FARP1Q9Y4F1 1045 aaPredicted RBP12.95□□□□□ -0.34
PTCHD4-202ENST00000398738 MS4A1P11836 297 aa12.94□□□□□ -0.34
PTCHD4-202ENST00000398738 IFNL1Q8IU54 200 aa12.94□□□□□ -0.34
PTCHD4-202ENST00000398738 CFDP1Q9UEE9 299 aaPredicted RBP12.94□□□□□ -0.34
PTCHD4-202ENST00000398738 WASHC2CQ9Y4E1 1318 aa12.93□□□□□ -0.34
PTCHD4-202ENST00000398738 CDK13Q14004 1512 aaKnown RBP12.93□□□□□ -0.34
PTCHD4-202ENST00000398738 KIF15Q9NS87 1388 aa12.93□□□□□ -0.34
PTCHD4-202ENST00000398738 CCDC61Q9Y6R9 512 aa12.93□□□□□ -0.34
PTCHD4-202ENST00000398738 TEX14Q8IWB6 1497 aa12.92□□□□□ -0.34
PTCHD4-202ENST00000398738 PRKAR2AP13861 404 aaKnown RBP12.92□□□□□ -0.34
PTCHD4-202ENST00000398738 SUPT6HQ7KZ85 1726 aaKnown RBP12.92□□□□□ -0.34
PTCHD4-202ENST00000398738 NLRP13Q86W25 1043 aa12.92□□□□□ -0.34
PTCHD4-202ENST00000398738 SHROOM2Q13796 1616 aa12.91□□□□□ -0.34
PTCHD4-202ENST00000398738 RALBP1Q15311 655 aa12.91□□□□□ -0.34
PTCHD4-202ENST00000398738 UGGT2Q9NYU1 1516 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms