RNA–Protein interactions for RNA: ENST00000395198.7

HERC4-204, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HERC4, Length 4,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-204ENST00000395198 FNBP4Q8N3X1 1017 aaPredicted RBP5.69□□□□□ -1.5
HERC4-204ENST00000395198 VTI1AQ96AJ9 217 aa5.69□□□□□ -1.5
HERC4-204ENST00000395198 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.69□□□□□ -1.5
HERC4-204ENST00000395198 CDCA7Q9BWT1 371 aaPredicted RBP5.69□□□□□ -1.5
HERC4-204ENST00000395198 KLHL42Q9P2K6 505 aa5.69□□□□□ -1.5
HERC4-204ENST00000395198 RBM26Q5T8P6 1007 aaKnown RBP5.68□□□□□ -1.5
HERC4-204ENST00000395198 ZNF622Q969S3 477 aaKnown RBP eCLIP5.68□□□□□ -1.5
HERC4-204ENST00000395198 GORABQ5T7V8 394 aa5.68□□□□□ -1.5
HERC4-204ENST00000395198 PLEKHG3A1L390 1219 aa5.67□□□□□ -1.5
HERC4-204ENST00000395198 ABCC9O60706 1549 aa5.67□□□□□ -1.5
HERC4-204ENST00000395198 CLGNO14967 610 aa5.67□□□□□ -1.5
HERC4-204ENST00000395198 CCER2I3L3R5 266 aa5.67□□□□□ -1.5
HERC4-204ENST00000395198 PAX3P23760 479 aa5.67□□□□□ -1.5
HERC4-204ENST00000395198 CCDC184Q52MB2 194 aa5.67□□□□□ -1.5
HERC4-204ENST00000395198 POM121Q96HA1 1249 aa5.67□□□□□ -1.5
HERC4-204ENST00000395198 ZNF830Q96NB3 372 aaPredicted RBP5.67□□□□□ -1.5
HERC4-204ENST00000395198 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.66□□□□□ -1.53e-7■■■□□ 16.3
HERC4-204ENST00000395198 PARNO95453 639 aaKnown RBP5.66□□□□□ -1.5
HERC4-204ENST00000395198 TRIM41Q8WV44 630 aa5.66□□□□□ -1.5
HERC4-204ENST00000395198 MCCD1P59942 119 aaPredicted RBP5.66□□□□□ -1.5
HERC4-204ENST00000395198 SDR16C5Q8N3Y7 309 aa5.66□□□□□ -1.5
HERC4-204ENST00000395198 PNMA2Q9UL42 364 aa5.66□□□□□ -1.5
HERC4-204ENST00000395198 MYCNP04198 464 aaPredicted RBP5.65□□□□□ -1.5
HERC4-204ENST00000395198 SSFA2P28290 1259 aa5.65□□□□□ -1.5
HERC4-204ENST00000395198 CLEC4GQ6UXB4 293 aa5.65□□□□□ -1.5
HERC4-204ENST00000395198 KRBA2Q6ZNG9 492 aa5.65□□□□□ -1.5
HERC4-204ENST00000395198 TXNDC2Q86VQ3 553 aa5.65□□□□□ -1.5
HERC4-204ENST00000395198 DRC1Q96MC2 740 aa5.65□□□□□ -1.5
HERC4-204ENST00000395198 PRDM4Q9UKN5 801 aa5.65□□□□□ -1.5
HERC4-204ENST00000395198 RHBDL3P58872 404 aa5.65□□□□□ -1.51
HERC4-204ENST00000395198 P3H3Q8IVL6 736 aa5.65□□□□□ -1.51
HERC4-204ENST00000395198 PMM1Q92871 262 aa5.65□□□□□ -1.51
HERC4-204ENST00000395198 SEMA3EO15041 775 aa5.64□□□□□ -1.51
HERC4-204ENST00000395198 PSEN1P49768 467 aa5.64□□□□□ -1.51
HERC4-204ENST00000395198 RNF25Q96BH1 459 aaPredicted RBP5.64□□□□□ -1.51
HERC4-204ENST00000395198 MRRFQ96E11 262 aaKnown RBP5.64□□□□□ -1.51
HERC4-204ENST00000395198 DMRT2Q9Y5R5 561 aa5.64□□□□□ -1.51
HERC4-204ENST00000395198 SPDYE4A6NLX3 237 aa5.64□□□□□ -1.51
HERC4-204ENST00000395198 PLCD3Q8N3E9 789 aa5.64□□□□□ -1.51
HERC4-204ENST00000395198 IRF6O14896 467 aa5.64□□□□□ -1.51
HERC4-204ENST00000395198 APLP1P51693 650 aa5.64□□□□□ -1.51
HERC4-204ENST00000395198 FLIIQ13045 1269 aa5.64□□□□□ -1.51
HERC4-204ENST00000395198 LONRF3Q496Y0 759 aa5.64□□□□□ -1.51
HERC4-204ENST00000395198 RBM47A0AV96 593 aaKnown RBP5.64□□□□□ -1.51
HERC4-204ENST00000395198 VGFO15240 615 aaPredicted RBP5.64□□□□□ -1.51
HERC4-204ENST00000395198 SPOCK2Q92563 424 aa5.64□□□□□ -1.51
HERC4-204ENST00000395198 NBPF11Q86T75 865 aa5.63□□□□□ -1.51
HERC4-204ENST00000395198 CADPS2Q86UW7 1296 aa5.63□□□□□ -1.51
HERC4-204ENST00000395198 RBM46Q8TBY0 533 aaKnown RBP5.63□□□□□ -1.51
HERC4-204ENST00000395198 MAF1Q9H063 256 aa5.63□□□□□ -1.51
HERC4-204ENST00000395198 MPNDQ8N594 471 aa5.63□□□□□ -1.51
HERC4-204ENST00000395198 NACADO15069 1562 aa5.63□□□□□ -1.51
HERC4-204ENST00000395198 SKIV2LQ15477 1246 aaKnown RBP5.62□□□□□ -1.51
HERC4-204ENST00000395198 HDAC5Q9UQL6 1122 aa5.62□□□□□ -1.51
HERC4-204ENST00000395198 SEMA3FQ13275 785 aa5.62□□□□□ -1.51
HERC4-204ENST00000395198 NEUROD1Q13562 356 aa5.62□□□□□ -1.51
HERC4-204ENST00000395198 PPARGC1BQ86YN6 1023 aaKnown RBP5.62□□□□□ -1.51
HERC4-204ENST00000395198 SERPINA10Q9UK55 444 aa5.62□□□□□ -1.51
HERC4-204ENST00000395198 CNGB1Q14028 1251 aaPredicted RBP5.62□□□□□ -1.51
HERC4-204ENST00000395198 SREK1Q8WXA9 508 aaKnown RBP5.62□□□□□ -1.51
HERC4-204ENST00000395198 TTC36A6NLP5 189 aa5.62□□□□□ -1.51
HERC4-204ENST00000395198 CREB3O43889 395 aa5.62□□□□□ -1.51
HERC4-204ENST00000395198 KIF4AO95239 1232 aa5.62□□□□□ -1.51
HERC4-204ENST00000395198 ERCC3P19447 782 aa5.62□□□□□ -1.51
HERC4-204ENST00000395198 NBPF1Q3BBV0 1214 aa5.62□□□□□ -1.51
HERC4-204ENST00000395198 PLSCR2Q9NRY7 297 aa5.62□□□□□ -1.51
HERC4-204ENST00000395198 ZFYVE27Q5T4F4 411 aa5.61□□□□□ -1.51
HERC4-204ENST00000395198 POLD1P28340 1107 aa5.61□□□□□ -1.51
HERC4-204ENST00000395198 ARMCX6Q7L4S7 300 aa5.61□□□□□ -1.51
HERC4-204ENST00000395198 NOM1Q5C9Z4 860 aaKnown RBP5.61□□□□□ -1.51
HERC4-204ENST00000395198 ARHGEF1Q92888 912 aaKnown RBP5.61□□□□□ -1.51
HERC4-204ENST00000395198 EGFL6Q8IUX8 553 aa5.6□□□□□ -1.51
HERC4-204ENST00000395198 MCM6Q14566 821 aa5.6□□□□□ -1.51
HERC4-204ENST00000395198 PROSER2Q86WR7 435 aaPredicted RBP5.6□□□□□ -1.51
HERC4-204ENST00000395198 EPB41L2O43491 1005 aaKnown RBP5.6□□□□□ -1.51
HERC4-204ENST00000395198 ERBB3P21860 1342 aa5.6□□□□□ -1.51
HERC4-204ENST00000395198 CCDC194A0A1B0GVG4 234 aa5.6□□□□□ -1.51
HERC4-204ENST00000395198 SND1Q7KZF4 910 aaKnown RBP eCLIP5.6□□□□□ -1.51
HERC4-204ENST00000395198 IGF1RP08069 1367 aa5.59□□□□□ -1.51
HERC4-204ENST00000395198 GET4Q7L5D6 327 aaPredicted RBP5.59□□□□□ -1.51
HERC4-204ENST00000395198 MORC4Q8TE76 937 aa5.59□□□□□ -1.51
HERC4-204ENST00000395198 PABPN1Q86U42 306 aaKnown RBP eCLIP5.59□□□□□ -1.51
HERC4-204ENST00000395198 ATL2Q8NHH9 583 aa5.59□□□□□ -1.51
HERC4-204ENST00000395198 UBA5Q9GZZ9 404 aa5.59□□□□□ -1.51
HERC4-204ENST00000395198 GABBR1Q9UBS5 961 aa5.59□□□□□ -1.51
HERC4-204ENST00000395198 SBNO2Q9Y2G9 1366 aa5.59□□□□□ -1.51
HERC4-204ENST00000395198 PSME1Q06323 249 aa5.59□□□□□ -1.52
HERC4-204ENST00000395198 POLA2Q14181 598 aa5.59□□□□□ -1.52
HERC4-204ENST00000395198 SMC5Q8IY18 1101 aa5.59□□□□□ -1.52
HERC4-204ENST00000395198 IVNS1ABPQ9Y6Y0 642 aa5.59□□□□□ -1.52
HERC4-204ENST00000395198 EXOC5O00471 708 aa5.58□□□□□ -1.52
HERC4-204ENST00000395198 U2SURPO15042 1029 aaKnown RBP5.58□□□□□ -1.52
HERC4-204ENST00000395198 NBPF20Q3BBV1 942 aa5.58□□□□□ -1.52
HERC4-204ENST00000395198 CCDC97Q96F63 343 aaPredicted RBP5.58□□□□□ -1.52
HERC4-204ENST00000395198 RGL3Q3MIN7 710 aa5.58□□□□□ -1.52
HERC4-204ENST00000395198 CACTIN-AS1Q8N1I8 211 aa5.58□□□□□ -1.52
HERC4-204ENST00000395198 TSPAN18Q96SJ8 248 aa5.58□□□□□ -1.52
HERC4-204ENST00000395198 PPP1R1BQ9UD71 204 aaPredicted RBP5.58□□□□□ -1.52
HERC4-204ENST00000395198 BDNFP23560 247 aa5.58□□□□□ -1.52
HERC4-204ENST00000395198 LARGE2Q8N3Y3 721 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms