RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 KIF21BO75037 1637 aa14.77□□□□□ -0.04
SYNE1-204ENST00000367248 CC2D2AQ9P2K1 1620 aa14.77□□□□□ -0.04
SYNE1-204ENST00000367248 ANKRD50Q9ULJ7 1429 aa14.77□□□□□ -0.05
SYNE1-204ENST00000367248 B4GALNT3Q6L9W6 998 aa14.77□□□□□ -0.05
SYNE1-204ENST00000367248 EVC2Q86UK5 1308 aa14.77□□□□□ -0.05
SYNE1-204ENST00000367248 PSME1Q06323 249 aa14.77□□□□□ -0.05
SYNE1-204ENST00000367248 NGEFQ8N5V2 710 aa14.77□□□□□ -0.05
SYNE1-204ENST00000367248 STAC3Q96MF2 364 aa14.76□□□□□ -0.05
SYNE1-204ENST00000367248 PANK3Q9H999 370 aa14.76□□□□□ -0.05
SYNE1-204ENST00000367248 PIP4K2BP78356 416 aa14.76□□□□□ -0.05
SYNE1-204ENST00000367248 SYNJ2O15056 1496 aa14.76□□□□□ -0.05
SYNE1-204ENST00000367248 NUTM2GQ5VZR2 741 aa14.75□□□□□ -0.05
SYNE1-204ENST00000367248 USP35Q9P2H5 1018 aa14.75□□□□□ -0.05
SYNE1-204ENST00000367248 DNAJC5BQ9UF47 199 aa14.75□□□□□ -0.05
SYNE1-204ENST00000367248 GOLGA6L22H0YM25 854 aa14.75□□□□□ -0.05
SYNE1-204ENST00000367248 ATF3P18847 181 aa14.75□□□□□ -0.05
SYNE1-204ENST00000367248 NCOA2Q15596 1464 aa14.75□□□□□ -0.05
SYNE1-204ENST00000367248 LRRC9Q6ZRR7 1453 aa14.75□□□□□ -0.05
SYNE1-204ENST00000367248 ZRSR1Q15695 479 aaKnown RBP14.74□□□□□ -0.05
SYNE1-204ENST00000367248 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.74□□□□□ -0.05
SYNE1-204ENST00000367248 STK31Q9BXU1 1019 aa14.74□□□□□ -0.05
SYNE1-204ENST00000367248 PRXQ9BXM0 1461 aa14.74□□□□□ -0.05
SYNE1-204ENST00000367248 RCAN3Q9UKA8 241 aa14.74□□□□□ -0.05
SYNE1-204ENST00000367248 GORABQ5T7V8 394 aa14.73□□□□□ -0.05
SYNE1-204ENST00000367248 FRAT2O75474 233 aaPredicted RBP14.73□□□□□ -0.05
SYNE1-204ENST00000367248 FYCO1Q9BQS8 1478 aa14.73□□□□□ -0.05
SYNE1-204ENST00000367248 SLC4A10Q6U841 1118 aa14.73□□□□□ -0.05
SYNE1-204ENST00000367248 USP47Q96K76 1375 aa14.73□□□□□ -0.05
SYNE1-204ENST00000367248 NUTM2BA6NNL0 878 aaPredicted RBP14.72□□□□□ -0.05
SYNE1-204ENST00000367248 NUTM2EB1AL46 878 aaPredicted RBP14.72□□□□□ -0.05
SYNE1-204ENST00000367248 NUTM2AQ8IVF1 878 aaPredicted RBP14.72□□□□□ -0.05
SYNE1-204ENST00000367248 CCDC146Q8IYE0 955 aa14.72□□□□□ -0.05
SYNE1-204ENST00000367248 CUX1P39880 1505 aa14.72□□□□□ -0.05
SYNE1-204ENST00000367248 LMOD3Q0VAK6 560 aa14.72□□□□□ -0.05
SYNE1-204ENST00000367248 ARAP1Q96P48 1450 aa14.72□□□□□ -0.05
SYNE1-204ENST00000367248 ERICH3Q5RHP9 1530 aa14.72□□□□□ -0.05
SYNE1-204ENST00000367248 COG3Q96JB2 828 aa14.71□□□□□ -0.05
SYNE1-204ENST00000367248 CGNL1Q0VF96 1302 aa14.71□□□□□ -0.05
SYNE1-204ENST00000367248 SYNJ1O43426 1573 aa14.7□□□□□ -0.06
SYNE1-204ENST00000367248 MYBBP1AQ9BQG0 1328 aaKnown RBP14.7□□□□□ -0.06
SYNE1-204ENST00000367248 PDE3BQ13370 1112 aa14.69□□□□□ -0.06
SYNE1-204ENST00000367248 PPP1R1BQ9UD71 204 aaPredicted RBP14.69□□□□□ -0.06
SYNE1-204ENST00000367248 SNAPC4Q5SXM2 1469 aa14.69□□□□□ -0.06
SYNE1-204ENST00000367248 CENPJQ9HC77 1338 aaPredicted RBP14.68□□□□□ -0.06
SYNE1-204ENST00000367248 ITPRIPQ8IWB1 547 aa14.68□□□□□ -0.06
SYNE1-204ENST00000367248 ANP32EQ9BTT0 268 aa14.67□□□□□ -0.06
SYNE1-204ENST00000367248 PRKRIP1Q9H875 184 aaPredicted RBP14.67□□□□□ -0.06
SYNE1-204ENST00000367248 SMC4Q9NTJ3 1288 aa14.67□□□□□ -0.06
SYNE1-204ENST00000367248 ELL2O00472 640 aaPredicted RBP14.67□□□□□ -0.06
SYNE1-204ENST00000367248 C1orf141Q5JVX7 400 aa14.66□□□□□ -0.06
SYNE1-204ENST00000367248 RWDD1Q9H446 243 aaPredicted RBP14.66□□□□□ -0.06
SYNE1-204ENST00000367248 RRP7AQ9Y3A4 280 aaKnown RBP14.66□□□□□ -0.06
SYNE1-204ENST00000367248 ERICH6BQ5W0A0 696 aa14.65□□□□□ -0.06
SYNE1-204ENST00000367248 TROQ12816 1431 aaPredicted RBP14.65□□□□□ -0.06
SYNE1-204ENST00000367248 HDAC5Q9UQL6 1122 aa14.65□□□□□ -0.06
SYNE1-204ENST00000367248 NECTIN2Q92692 538 aa14.64□□□□□ -0.07
SYNE1-204ENST00000367248 PLCB2Q00722 1185 aa14.63□□□□□ -0.07
SYNE1-204ENST00000367248 PROSER2Q86WR7 435 aaPredicted RBP14.63□□□□□ -0.07
SYNE1-204ENST00000367248 ARHGAP5Q13017 1502 aa14.63□□□□□ -0.07
SYNE1-204ENST00000367248 KIAA0586Q9BVV6 1533 aa14.63□□□□□ -0.07
SYNE1-204ENST00000367248 FBXW7Q969H0 707 aa14.62□□□□□ -0.07
SYNE1-204ENST00000367248 CLUAP1Q96AJ1 413 aa14.62□□□□□ -0.07
SYNE1-204ENST00000367248 CFAP44Q96MT7 982 aa14.62□□□□□ -0.07
SYNE1-204ENST00000367248 EFCAB5A4FU69 1503 aa14.62□□□□□ -0.07
SYNE1-204ENST00000367248 EIF2S2P20042 333 aaKnown RBP14.61□□□□□ -0.07
SYNE1-204ENST00000367248 DNMBPQ6XZF7 1577 aa14.61□□□□□ -0.07
SYNE1-204ENST00000367248 SCAPERQ9BY12 1400 aa14.61□□□□□ -0.07
SYNE1-204ENST00000367248 STRN4Q9NRL3 753 aa14.61□□□□□ -0.07
SYNE1-204ENST00000367248 TOP2BQ02880 1626 aa14.6□□□□□ -0.07
SYNE1-204ENST00000367248 SPRYD3Q8NCJ5 442 aa14.6□□□□□ -0.07
SYNE1-204ENST00000367248 MIA2Q96PC5 1412 aa14.6□□□□□ -0.07
SYNE1-204ENST00000367248 TXNDC2Q86VQ3 553 aa14.6□□□□□ -0.07
SYNE1-204ENST00000367248 MCCP23508 829 aa14.59□□□□□ -0.07
SYNE1-204ENST00000367248 ESCO1Q5FWF5 840 aa14.59□□□□□ -0.07
SYNE1-204ENST00000367248 TMEM132EQ6IEE7 984 aa14.59□□□□□ -0.07
SYNE1-204ENST00000367248 HMMRO75330 724 aa14.59□□□□□ -0.07
SYNE1-204ENST00000367248 NLRP2Q9NX02 1062 aa14.59□□□□□ -0.07
SYNE1-204ENST00000367248 BICRAQ9NZM4 1560 aa14.59□□□□□ -0.07
SYNE1-204ENST00000367248 ABCA10Q8WWZ4 1543 aa14.59□□□□□ -0.07
SYNE1-204ENST00000367248 PLEKHH2Q8IVE3 1493 aa14.59□□□□□ -0.07
SYNE1-204ENST00000367248 HSP90AB1P08238 724 aaKnown RBP14.59□□□□□ -0.07
SYNE1-204ENST00000367248 TEFQ10587 303 aa14.59□□□□□ -0.07
SYNE1-204ENST00000367248 TTC5Q8N0Z6 440 aa14.59□□□□□ -0.07
SYNE1-204ENST00000367248 TOMM22Q9NS69 142 aa14.59□□□□□ -0.07
SYNE1-204ENST00000367248 RAPGEF3O95398 923 aa14.59□□□□□ -0.07
SYNE1-204ENST00000367248 DCAF8L1A6NGE4 600 aa14.59□□□□□ -0.07
SYNE1-204ENST00000367248 CFAP70Q5T0N1 1121 aa14.58□□□□□ -0.07
SYNE1-204ENST00000367248 GNL2Q13823 731 aaKnown RBP14.58□□□□□ -0.08
SYNE1-204ENST00000367248 DIAPH1O60610 1272 aaKnown RBP14.58□□□□□ -0.08
SYNE1-204ENST00000367248 RAD21O60216 631 aa14.58□□□□□ -0.08
SYNE1-204ENST00000367248 PRDM2Q13029 1718 aa14.57□□□□□ -0.08
SYNE1-204ENST00000367248 RRBP1Q9P2E9 1410 aaKnown RBP14.56□□□□□ -0.08
SYNE1-204ENST00000367248 PMFBP1Q8TBY8 1022 aa14.56□□□□□ -0.08
SYNE1-204ENST00000367248 C9orf84Q5VXU9 1444 aa14.55□□□□□ -0.08
SYNE1-204ENST00000367248 HFM1A2PYH4 1435 aa14.55□□□□□ -0.08
SYNE1-204ENST00000367248 HSCBQ8IWL3 235 aa14.55□□□□□ -0.08
SYNE1-204ENST00000367248 KIF7Q2M1P5 1343 aa14.55□□□□□ -0.08
SYNE1-204ENST00000367248 SF3B2Q13435 895 aaKnown RBP14.55□□□□□ -0.08
SYNE1-204ENST00000367248 KIAA1211Q6ZU35 1233 aa14.54□□□□□ -0.08
SYNE1-204ENST00000367248 APAF1O14727 1248 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms