RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 MAPKBP1O60336 1514 aa17.69■□□□□ 0.42
COL6A1-201ENST00000361866 ZBTB7CA1YPR0 619 aa17.68■□□□□ 0.42
COL6A1-201ENST00000361866 PLEKHG5O94827 1062 aa17.68■□□□□ 0.42
COL6A1-201ENST00000361866 PTMAP06454 111 aaKnown RBP17.68■□□□□ 0.42
COL6A1-201ENST00000361866 FRAT2O75474 233 aaPredicted RBP17.67■□□□□ 0.42
COL6A1-201ENST00000361866 CCDC144AA2RUR9 1427 aa17.67■□□□□ 0.42
COL6A1-201ENST00000361866 GOLGA6L3A6NEY3 463 aa17.67■□□□□ 0.42
COL6A1-201ENST00000361866 STK26Q9P289 416 aa17.67■□□□□ 0.42
COL6A1-201ENST00000361866 DNAJC5BQ9UF47 199 aa17.66■□□□□ 0.42
COL6A1-201ENST00000361866 SRPK2P78362 688 aaKnown RBP17.66■□□□□ 0.42
COL6A1-201ENST00000361866 BICRAQ9NZM4 1560 aa17.66■□□□□ 0.42
COL6A1-201ENST00000361866 FYCO1Q9BQS8 1478 aa17.65■□□□□ 0.42
COL6A1-201ENST00000361866 DNTTIP2Q5QJE6 756 aaKnown RBP17.65■□□□□ 0.42
COL6A1-201ENST00000361866 POGKQ9P215 609 aa17.65■□□□□ 0.42
COL6A1-201ENST00000361866 SMC4Q9NTJ3 1288 aa17.65■□□□□ 0.42
COL6A1-201ENST00000361866 NUTM2DQ5VT03 806 aaPredicted RBP17.64■□□□□ 0.42
COL6A1-201ENST00000361866 ARID3AQ99856 593 aa17.64■□□□□ 0.42
COL6A1-201ENST00000361866 NESP48681 1621 aa17.64■□□□□ 0.41
COL6A1-201ENST00000361866 PLCB2Q00722 1185 aa17.64■□□□□ 0.41
COL6A1-201ENST00000361866 GGT6Q6P531 493 aa17.64■□□□□ 0.41
COL6A1-201ENST00000361866 SMG6Q86US8 1419 aaKnown RBP17.63■□□□□ 0.41
COL6A1-201ENST00000361866 PMFBP1Q8TBY8 1022 aa17.63■□□□□ 0.41
COL6A1-201ENST00000361866 GAPVD1Q14C86 1478 aa17.63■□□□□ 0.41
COL6A1-201ENST00000361866 PANK1Q8TE04 598 aa17.62■□□□□ 0.41
COL6A1-201ENST00000361866 BRD4O60885 1362 aaPredicted RBP17.62■□□□□ 0.41
COL6A1-201ENST00000361866 TRAK1Q9UPV9 953 aa17.61■□□□□ 0.41
COL6A1-201ENST00000361866 KIF3BO15066 747 aa17.6■□□□□ 0.41
COL6A1-201ENST00000361866 CC2D2AQ9P2K1 1620 aa17.59■□□□□ 0.41
COL6A1-201ENST00000361866 SOX12O15370 315 aa17.59■□□□□ 0.41
COL6A1-201ENST00000361866 E9PSI1 815 aa17.58■□□□□ 0.4
COL6A1-201ENST00000361866 ANKRD50Q9ULJ7 1429 aa17.58■□□□□ 0.4
COL6A1-201ENST00000361866 C20orf194Q5TEA3 1177 aa17.58■□□□□ 0.4
COL6A1-201ENST00000361866 BCAR3O75815 825 aa17.56■□□□□ 0.4
COL6A1-201ENST00000361866 ELL2O00472 640 aaPredicted RBP17.56■□□□□ 0.4
COL6A1-201ENST00000361866 CGNL1Q0VF96 1302 aa17.55■□□□□ 0.4
COL6A1-201ENST00000361866 AQRO60306 1485 aaKnown RBP eCLIP17.55■□□□□ 0.4
COL6A1-201ENST00000361866 MSNP26038 577 aaKnown RBP17.55■□□□□ 0.4
COL6A1-201ENST00000361866 CASC1Q6TDU7 716 aa17.55■□□□□ 0.4
COL6A1-201ENST00000361866 EFCAB2Q5VUJ9 269 aa17.54■□□□□ 0.4
COL6A1-201ENST00000361866 GBP4Q96PP9 640 aa17.54■□□□□ 0.4
COL6A1-201ENST00000361866 PCF11O94913 1555 aaKnown RBP17.54■□□□□ 0.4
COL6A1-201ENST00000361866 PTPRKQ15262 1439 aa17.54■□□□□ 0.4
COL6A1-201ENST00000361866 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.52■□□□□ 0.4
COL6A1-201ENST00000361866 IPO8O15397 1037 aaKnown RBP17.52■□□□□ 0.4
COL6A1-201ENST00000361866 KANK1Q14678 1352 aa17.51■□□□□ 0.39
COL6A1-201ENST00000361866 TRHP20396 242 aaPredicted RBP17.5■□□□□ 0.39
COL6A1-201ENST00000361866 ANKRD30BQ9BXX2 1392 aa17.5■□□□□ 0.39
COL6A1-201ENST00000361866 PPP2R1AP30153 589 aa17.5■□□□□ 0.39
COL6A1-201ENST00000361866 HMGXB3Q12766 1538 aa17.49■□□□□ 0.39
COL6A1-201ENST00000361866 NCOA1Q15788 1441 aa17.49■□□□□ 0.39
COL6A1-201ENST00000361866 RSPH6AQ9H0K4 717 aa17.49■□□□□ 0.39
COL6A1-201ENST00000361866 FOXD4L5Q5VV16 416 aaPredicted RBP17.49■□□□□ 0.39
COL6A1-201ENST00000361866 C14orf37Q86TY3 774 aa17.49■□□□□ 0.39
COL6A1-201ENST00000361866 FOXD4L4Q8WXT5 416 aaPredicted RBP17.49■□□□□ 0.39
COL6A1-201ENST00000361866 RSPH4AQ5TD94 716 aa17.48■□□□□ 0.39
COL6A1-201ENST00000361866 SPAG9O60271 1321 aaKnown RBP17.47■□□□□ 0.39
COL6A1-201ENST00000361866 ZKSCAN2Q63HK3 967 aa17.46■□□□□ 0.39
COL6A1-201ENST00000361866 MLECQ14165 292 aa17.46■□□□□ 0.39
COL6A1-201ENST00000361866 NOL8Q76FK4 1167 aaKnown RBP17.46■□□□□ 0.39
COL6A1-201ENST00000361866 ANKRD45Q5TZF3 282 aa17.45■□□□□ 0.38
COL6A1-201ENST00000361866 KIAA1107Q9UPP5 1409 aa17.45■□□□□ 0.38
COL6A1-201ENST00000361866 CHMP4BQ9H444 224 aaKnown RBP17.45■□□□□ 0.38
COL6A1-201ENST00000361866 POLA1P09884 1462 aaPredicted RBP17.45■□□□□ 0.38
COL6A1-201ENST00000361866 VSIG10Q8N0Z9 540 aa17.45■□□□□ 0.38
COL6A1-201ENST00000361866 PRG4Q92954 1404 aaPredicted RBP17.45■□□□□ 0.38
COL6A1-201ENST00000361866 HSP90AA2PQ14568 343 aaPredicted RBP17.44■□□□□ 0.38
COL6A1-201ENST00000361866 MIA2Q96PC5 1412 aa17.44■□□□□ 0.38
COL6A1-201ENST00000361866 EIF3AQ14152 1382 aaKnown RBP17.44■□□□□ 0.38
COL6A1-201ENST00000361866 PTPRGP23470 1445 aa17.44■□□□□ 0.38
COL6A1-201ENST00000361866 LNPKQ9C0E8 428 aa17.44■□□□□ 0.38
COL6A1-201ENST00000361866 CDK13Q14004 1512 aaKnown RBP17.43■□□□□ 0.38
COL6A1-201ENST00000361866 EFCAB5A4FU69 1503 aa17.42■□□□□ 0.38
COL6A1-201ENST00000361866 DDX49Q9Y6V7 483 aaKnown RBP17.42■□□□□ 0.38
COL6A1-201ENST00000361866 FOXD4L6Q3SYB3 417 aaPredicted RBP17.42■□□□□ 0.38
COL6A1-201ENST00000361866 FOXD4L3Q6VB84 417 aaPredicted RBP17.42■□□□□ 0.38
COL6A1-201ENST00000361866 DAPK1P53355 1430 aa17.41■□□□□ 0.38
COL6A1-201ENST00000361866 CALD1Q05682 793 aaKnown RBP17.41■□□□□ 0.38
COL6A1-201ENST00000361866 OSCARQ8IYS5 282 aa17.41■□□□□ 0.38
COL6A1-201ENST00000361866 DZIP1LQ8IYY4 767 aaKnown RBP17.41■□□□□ 0.38
COL6A1-201ENST00000361866 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.41■□□□□ 0.38
COL6A1-201ENST00000361866 C22orf23Q9BZE7 217 aa17.41■□□□□ 0.38
COL6A1-201ENST00000361866 TCP11L2Q8N4U5 519 aa17.4■□□□□ 0.38
COL6A1-201ENST00000361866 CHMP5Q9NZZ3 219 aa17.4■□□□□ 0.38
COL6A1-201ENST00000361866 CFAP70Q5T0N1 1121 aa17.39■□□□□ 0.38
COL6A1-201ENST00000361866 PDZRN3Q9UPQ7 1066 aa17.39■□□□□ 0.38
COL6A1-201ENST00000361866 MAP3K1Q13233 1512 aa17.39■□□□□ 0.38
COL6A1-201ENST00000361866 EHBP1L1Q8N3D4 1523 aa17.39■□□□□ 0.38
COL6A1-201ENST00000361866 CYB5RLQ6IPT4 315 aa17.39■□□□□ 0.37
COL6A1-201ENST00000361866 PRDM2Q13029 1718 aa17.39■□□□□ 0.37
COL6A1-201ENST00000361866 DDX11L8A8MPP1 907 aa17.38■□□□□ 0.37
COL6A1-201ENST00000361866 TAOK2Q9UL54 1235 aa17.38■□□□□ 0.37
COL6A1-201ENST00000361866 TOPBP1Q92547 1522 aa17.37■□□□□ 0.37
COL6A1-201ENST00000361866 HDGFL2Q7Z4V5 671 aaPredicted RBP17.37■□□□□ 0.37
COL6A1-201ENST00000361866 MTHFSP49914 203 aa17.37■□□□□ 0.37
COL6A1-201ENST00000361866 TMEM132EQ6IEE7 984 aa17.36■□□□□ 0.37
COL6A1-201ENST00000361866 SLC4A10Q6U841 1118 aa17.36■□□□□ 0.37
COL6A1-201ENST00000361866 PTPN23Q9H3S7 1636 aa17.36■□□□□ 0.37
COL6A1-201ENST00000361866 RUNDC1Q96C34 613 aa17.36■□□□□ 0.37
COL6A1-201ENST00000361866 TRAK2O60296 914 aa17.34■□□□□ 0.37
COL6A1-201ENST00000361866 OS9Q13438 667 aaPredicted RBP17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms