RNA–Protein interactions for RNA: ENST00000358730.6

RFX3-202, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 2,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-202ENST00000358730 CCDC144AA2RUR9 1427 aa11.67□□□□□ -0.54
RFX3-202ENST00000358730 SMG6Q86US8 1419 aaKnown RBP11.67□□□□□ -0.54
RFX3-202ENST00000358730 E9PCH4 1651 aa11.67□□□□□ -0.54
RFX3-202ENST00000358730 UNC13BO14795 1591 aa11.67□□□□□ -0.54
RFX3-202ENST00000358730 RSPH4AQ5TD94 716 aa11.67□□□□□ -0.54
RFX3-202ENST00000358730 MAST1Q9Y2H9 1570 aa11.66□□□□□ -0.54
RFX3-202ENST00000358730 TRPM1Q7Z4N2 1603 aa11.66□□□□□ -0.54
RFX3-202ENST00000358730 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.66□□□□□ -0.54
RFX3-202ENST00000358730 MYO5CQ9NQX4 1742 aa11.66□□□□□ -0.54
RFX3-202ENST00000358730 B4GALNT3Q6L9W6 998 aa11.65□□□□□ -0.54
RFX3-202ENST00000358730 TMC1Q8TDI8 760 aa11.65□□□□□ -0.54
RFX3-202ENST00000358730 SHROOM2Q13796 1616 aa11.65□□□□□ -0.54
RFX3-202ENST00000358730 PRAG1Q86YV5 1406 aa11.65□□□□□ -0.55
RFX3-202ENST00000358730 NUDCQ9Y266 331 aa11.64□□□□□ -0.55
RFX3-202ENST00000358730 PLXNC1O60486 1568 aa11.64□□□□□ -0.55
RFX3-202ENST00000358730 PNISRQ8TF01 805 aaKnown RBP11.64□□□□□ -0.55
RFX3-202ENST00000358730 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.63□□□□□ -0.557e-6■□□□□ 10.8
RFX3-202ENST00000358730 IQGAP3Q86VI3 1631 aa11.63□□□□□ -0.55
RFX3-202ENST00000358730 ABCC2Q92887 1545 aa11.63□□□□□ -0.55
RFX3-202ENST00000358730 SENP3-EIF4A1A0A087X0R7 540 aa11.63□□□□□ -0.55
RFX3-202ENST00000358730 ERCC6L2Q5T890 1561 aa11.62□□□□□ -0.55
RFX3-202ENST00000358730 RGL3Q3MIN7 710 aa11.62□□□□□ -0.55
RFX3-202ENST00000358730 PLEKHH2Q8IVE3 1493 aa11.62□□□□□ -0.55
RFX3-202ENST00000358730 MYBBP1AQ9BQG0 1328 aaKnown RBP11.62□□□□□ -0.55
RFX3-202ENST00000358730 KTN1Q86UP2 1357 aaKnown RBP11.62□□□□□ -0.55
RFX3-202ENST00000358730 A2MP01023 1474 aa11.61□□□□□ -0.55
RFX3-202ENST00000358730 BRD4O60885 1362 aaPredicted RBP11.61□□□□□ -0.55
RFX3-202ENST00000358730 PLA2R1Q13018 1463 aa11.61□□□□□ -0.55
RFX3-202ENST00000358730 FANCIQ9NVI1 1328 aa11.61□□□□□ -0.55
RFX3-202ENST00000358730 RALBP1Q15311 655 aa11.6□□□□□ -0.55
RFX3-202ENST00000358730 LRPPRCP42704 1394 aaKnown RBP11.6□□□□□ -0.55
RFX3-202ENST00000358730 DUOX2Q9NRD8 1548 aa11.6□□□□□ -0.55
RFX3-202ENST00000358730 MSH5O43196 834 aa11.59□□□□□ -0.55
RFX3-202ENST00000358730 LAMC1P11047 1609 aa11.59□□□□□ -0.55
RFX3-202ENST00000358730 EIF2AK4Q9P2K8 1649 aaKnown RBP11.59□□□□□ -0.55
RFX3-202ENST00000358730 NBPF1Q3BBV0 1214 aa11.58□□□□□ -0.55
RFX3-202ENST00000358730 PRDM15P57071 1507 aaPredicted RBP11.58□□□□□ -0.56
RFX3-202ENST00000358730 GPRASP1Q5JY77 1395 aa11.58□□□□□ -0.56
RFX3-202ENST00000358730 COL17A1Q9UMD9 1497 aaPredicted RBP11.58□□□□□ -0.56
RFX3-202ENST00000358730 RNF123Q5XPI4 1314 aa11.58□□□□□ -0.56
RFX3-202ENST00000358730 MAGI2Q86UL8 1455 aa11.57□□□□□ -0.56
RFX3-202ENST00000358730 ERBINQ96RT1 1412 aa11.57□□□□□ -0.56
RFX3-202ENST00000358730 ZCCHC11Q5TAX3 1644 aaKnown RBP11.56□□□□□ -0.56
RFX3-202ENST00000358730 PARD3Q8TEW0 1356 aa11.56□□□□□ -0.56
RFX3-202ENST00000358730 NLRP13Q86W25 1043 aa11.55□□□□□ -0.56
RFX3-202ENST00000358730 DISP3Q9P2K9 1392 aa11.55□□□□□ -0.56
RFX3-202ENST00000358730 ABCC1P33527 1531 aa11.55□□□□□ -0.56
RFX3-202ENST00000358730 ATP10AO60312 1499 aa11.55□□□□□ -0.56
RFX3-202ENST00000358730 PLCH2O75038 1416 aa11.55□□□□□ -0.56
RFX3-202ENST00000358730 CCDC136Q96JN2 1154 aa11.54□□□□□ -0.56
RFX3-202ENST00000358730 ERICH6Q7L0X2 663 aa11.54□□□□□ -0.56
RFX3-202ENST00000358730 RNF17Q9BXT8 1623 aaKnown RBP11.53□□□□□ -0.56
RFX3-202ENST00000358730 PHF23Q9BUL5 403 aaPredicted RBP11.53□□□□□ -0.56
RFX3-202ENST00000358730 EFCAB2Q5VUJ9 269 aa11.52□□□□□ -0.56
RFX3-202ENST00000358730 TESK2Q96S53 571 aa11.52□□□□□ -0.56
RFX3-202ENST00000358730 PER1O15534 1290 aaPredicted RBP11.52□□□□□ -0.57
RFX3-202ENST00000358730 TRAPPC8Q9Y2L5 1435 aa11.52□□□□□ -0.57
RFX3-202ENST00000358730 CC2D1BQ5T0F9 858 aaKnown RBP11.51□□□□□ -0.57
RFX3-202ENST00000358730 SALL2Q9Y467 1007 aaPredicted RBP11.51□□□□□ -0.57
RFX3-202ENST00000358730 TMF1P82094 1093 aa11.5□□□□□ -0.57
RFX3-202ENST00000358730 UHRF1BP1LA0JNW5 1464 aa11.5□□□□□ -0.57
RFX3-202ENST00000358730 CLASP1Q7Z460 1538 aa11.5□□□□□ -0.57
RFX3-202ENST00000358730 MADDQ8WXG6 1647 aa11.49□□□□□ -0.57
RFX3-202ENST00000358730 PANK3Q9H999 370 aa11.49□□□□□ -0.57
RFX3-202ENST00000358730 ZFYVE16Q7Z3T8 1539 aa11.49□□□□□ -0.57
RFX3-202ENST00000358730 RRP1P56182 461 aaKnown RBP11.49□□□□□ -0.57
RFX3-202ENST00000358730 WASHC2CQ9Y4E1 1318 aa11.49□□□□□ -0.57
RFX3-202ENST00000358730 SPAG9O60271 1321 aaKnown RBP11.48□□□□□ -0.57
RFX3-202ENST00000358730 TRPM2O94759 1503 aa11.48□□□□□ -0.57
RFX3-202ENST00000358730 SPHKAPQ2M3C7 1700 aa11.48□□□□□ -0.57
RFX3-202ENST00000358730 CEP152O94986 1710 aa11.47□□□□□ -0.57
RFX3-202ENST00000358730 IQGAP1P46940 1657 aa11.47□□□□□ -0.57
RFX3-202ENST00000358730 RCAN3Q9UKA8 241 aa11.47□□□□□ -0.57
RFX3-202ENST00000358730 PDE3BQ13370 1112 aa11.46□□□□□ -0.57
RFX3-202ENST00000358730 BLMP54132 1417 aaPredicted RBP11.46□□□□□ -0.57
RFX3-202ENST00000358730 DEPDC5O75140 1603 aa11.45□□□□□ -0.58
RFX3-202ENST00000358730 CLTCL1P53675 1640 aa11.45□□□□□ -0.58
RFX3-202ENST00000358730 ARAP3Q8WWN8 1544 aa11.45□□□□□ -0.58
RFX3-202ENST00000358730 RTEL1-TNFRSF6BF6WH68 1400 aa11.45□□□□□ -0.58
RFX3-202ENST00000358730 ZMYM4Q5VZL5 1548 aa11.45□□□□□ -0.58
RFX3-202ENST00000358730 AFAP1Q8N556 730 aa11.45□□□□□ -0.58
RFX3-202ENST00000358730 TET3O43151 1660 aa11.44□□□□□ -0.58
RFX3-202ENST00000358730 EXOC6Q8TAG9 804 aa11.43□□□□□ -0.58
RFX3-202ENST00000358730 INSRP06213 1382 aa11.43□□□□□ -0.58
RFX3-202ENST00000358730 WDR7Q9Y4E6 1490 aa11.43□□□□□ -0.58
RFX3-202ENST00000358730 CDCA7LQ96GN5 454 aa11.43□□□□□ -0.58
RFX3-202ENST00000358730 ATP7AQ04656 1500 aa11.43□□□□□ -0.58
RFX3-202ENST00000358730 INO80Q9ULG1 1556 aaPredicted RBP11.42□□□□□ -0.58
RFX3-202ENST00000358730 PTPRTO14522 1441 aa11.42□□□□□ -0.58
RFX3-202ENST00000358730 SCAF11Q99590 1463 aaKnown RBP11.42□□□□□ -0.58
RFX3-202ENST00000358730 SYNMO15061 1565 aa11.42□□□□□ -0.58
RFX3-202ENST00000358730 ABCA9Q8IUA7 1624 aa11.41□□□□□ -0.58
RFX3-202ENST00000358730 FANCAO15360 1455 aa11.41□□□□□ -0.58
RFX3-202ENST00000358730 KANK1Q14678 1352 aa11.41□□□□□ -0.58
RFX3-202ENST00000358730 KNSTRNQ9Y448 316 aa11.41□□□□□ -0.58
RFX3-202ENST00000358730 SCAPERQ9BY12 1400 aa11.4□□□□□ -0.58
RFX3-202ENST00000358730 NOP58Q9Y2X3 529 aaKnown RBP11.4□□□□□ -0.58
RFX3-202ENST00000358730 ANP32AP39687 249 aaKnown RBP11.4□□□□□ -0.59
RFX3-202ENST00000358730 MYOM1P52179 1685 aa11.4□□□□□ -0.59
RFX3-202ENST00000358730 CDCA8Q53HL2 280 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms