RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 RB1CC1Q8TDY2 1594 aa7.49□□□□□ -1.21
VPS13B-203ENST00000358544 KIF27Q86VH2 1401 aa7.49□□□□□ -1.21
VPS13B-203ENST00000358544 ARHGAP35Q9NRY4 1499 aa7.48□□□□□ -1.21
VPS13B-203ENST00000358544 GOLGA2Q08379 1002 aa7.48□□□□□ -1.21
VPS13B-203ENST00000358544 PRDM10Q9NQV6 1147 aa7.48□□□□□ -1.21
VPS13B-203ENST00000358544 TRAK2O60296 914 aa7.48□□□□□ -1.21
VPS13B-203ENST00000358544 TPM3P06753 285 aa7.48□□□□□ -1.21
VPS13B-203ENST00000358544 NOL8Q76FK4 1167 aaKnown RBP7.48□□□□□ -1.21
VPS13B-203ENST00000358544 CCAR2Q8N163 923 aaKnown RBP7.48□□□□□ -1.21
VPS13B-203ENST00000358544 ARGLU1Q9NWB6 273 aaPredicted RBP7.48□□□□□ -1.21
VPS13B-203ENST00000358544 TSPYL1Q9H0U9 437 aa7.48□□□□□ -1.21
VPS13B-203ENST00000358544 IFT57Q9NWB7 429 aa7.47□□□□□ -1.21
VPS13B-203ENST00000358544 NAP1L2Q9ULW6 460 aaPredicted RBP7.47□□□□□ -1.21
VPS13B-203ENST00000358544 ZHX1Q9UKY1 873 aaPredicted RBP7.47□□□□□ -1.21
VPS13B-203ENST00000358544 MORC1Q86VD1 984 aa7.47□□□□□ -1.21
VPS13B-203ENST00000358544 U2SURPO15042 1029 aaKnown RBP7.47□□□□□ -1.21
VPS13B-203ENST00000358544 FHAD1B1AJZ9 1412 aa7.47□□□□□ -1.21
VPS13B-203ENST00000358544 C22orf23Q9BZE7 217 aa7.47□□□□□ -1.21
VPS13B-203ENST00000358544 FBLN2P98095 1184 aa7.46□□□□□ -1.21
VPS13B-203ENST00000358544 GNL2Q13823 731 aaKnown RBP7.46□□□□□ -1.22
VPS13B-203ENST00000358544 APBB1O00213 710 aa7.46□□□□□ -1.22
VPS13B-203ENST00000358544 NUCB2P80303 420 aa7.46□□□□□ -1.22
VPS13B-203ENST00000358544 CNTLNQ9NXG0 1405 aa7.46□□□□□ -1.22
VPS13B-203ENST00000358544 ZSCAN30Q86W11 494 aa7.46□□□□□ -1.22
VPS13B-203ENST00000358544 CLUAP1Q96AJ1 413 aa7.45□□□□□ -1.22
VPS13B-203ENST00000358544 TSPY26PQ9H489 355 aa7.45□□□□□ -1.22
VPS13B-203ENST00000358544 PDCL3Q9H2J4 239 aa7.45□□□□□ -1.22
VPS13B-203ENST00000358544 CCDC146Q8IYE0 955 aa7.45□□□□□ -1.22
VPS13B-203ENST00000358544 FOXD1Q16676 465 aa7.45□□□□□ -1.22
VPS13B-203ENST00000358544 BBXQ8WY36 941 aaPredicted RBP7.45□□□□□ -1.22
VPS13B-203ENST00000358544 ACBD3Q9H3P7 528 aa7.45□□□□□ -1.22
VPS13B-203ENST00000358544 ATP6V1DQ9Y5K8 247 aa7.44□□□□□ -1.22
VPS13B-203ENST00000358544 SMG6Q86US8 1419 aaKnown RBP7.44□□□□□ -1.22
VPS13B-203ENST00000358544 MNS1Q8NEH6 495 aa7.44□□□□□ -1.22
VPS13B-203ENST00000358544 KIF3AQ9Y496 699 aa7.44□□□□□ -1.22
VPS13B-203ENST00000358544 SASS6Q6UVJ0 657 aa7.44□□□□□ -1.22
VPS13B-203ENST00000358544 FMN1Q68DA7 1419 aa7.44□□□□□ -1.22
VPS13B-203ENST00000358544 CGNQ9P2M7 1197 aaKnown RBP7.43□□□□□ -1.22
VPS13B-203ENST00000358544 STAG3Q9UJ98 1225 aa7.43□□□□□ -1.22
VPS13B-203ENST00000358544 HMMRO75330 724 aa7.43□□□□□ -1.22
VPS13B-203ENST00000358544 L3MBTL2Q969R5 705 aa7.43□□□□□ -1.22
VPS13B-203ENST00000358544 SMC4Q9NTJ3 1288 aa7.43□□□□□ -1.22
VPS13B-203ENST00000358544 ABCC9O60706 1549 aa7.43□□□□□ -1.22
VPS13B-203ENST00000358544 MCTP1Q6DN14 999 aa7.43□□□□□ -1.22
VPS13B-203ENST00000358544 MCM4P33991 863 aa7.43□□□□□ -1.22
VPS13B-203ENST00000358544 EIF3AQ14152 1382 aaKnown RBP7.43□□□□□ -1.22
VPS13B-203ENST00000358544 CCDC7Q96M83 1385 aa7.43□□□□□ -1.22
VPS13B-203ENST00000358544 CFDP1Q9UEE9 299 aaPredicted RBP7.43□□□□□ -1.22
VPS13B-203ENST00000358544 PKD2Q13563 968 aa7.42□□□□□ -1.22
VPS13B-203ENST00000358544 RNF214Q8ND24 703 aa7.42□□□□□ -1.22
VPS13B-203ENST00000358544 CAVIN1Q6NZI2 390 aaKnown RBP7.42□□□□□ -1.22
VPS13B-203ENST00000358544 MYO10Q9HD67 2058 aa7.42□□□□□ -1.22
VPS13B-203ENST00000358544 RP1P56715 2156 aa7.42□□□□□ -1.22
VPS13B-203ENST00000358544 AEBP1Q8IUX7 1158 aa7.42□□□□□ -1.22
VPS13B-203ENST00000358544 DCAF11Q8TEB1 546 aa7.42□□□□□ -1.22
VPS13B-203ENST00000358544 MBD3O95983 291 aa7.42□□□□□ -1.22
VPS13B-203ENST00000358544 AAMPQ13685 434 aa7.42□□□□□ -1.22
VPS13B-203ENST00000358544 AK7Q96M32 723 aa7.42□□□□□ -1.22
VPS13B-203ENST00000358544 TAOK2Q9UL54 1235 aa7.42□□□□□ -1.22
VPS13B-203ENST00000358544 COG6Q9Y2V7 657 aa7.42□□□□□ -1.22
VPS13B-203ENST00000358544 BECN2A8MW95 431 aa7.42□□□□□ -1.22
VPS13B-203ENST00000358544 CCDC112Q8NEF3 446 aa7.42□□□□□ -1.22
VPS13B-203ENST00000358544 KIF7Q2M1P5 1343 aa7.42□□□□□ -1.22
VPS13B-203ENST00000358544 E9PSI1 815 aa7.41□□□□□ -1.22
VPS13B-203ENST00000358544 ZKSCAN2Q63HK3 967 aa7.41□□□□□ -1.22
VPS13B-203ENST00000358544 CIZ1Q9ULV3 898 aaPredicted RBP7.41□□□□□ -1.22
VPS13B-203ENST00000358544 U2AF1L5P0DN76 240 aaPredicted RBP7.41□□□□□ -1.22
VPS13B-203ENST00000358544 U2AF1Q01081 240 aaKnown RBP eCLIP7.41□□□□□ -1.226e-6■■■■□ 22.1
VPS13B-203ENST00000358544 ERICH4A6NGS2 130 aa7.41□□□□□ -1.22
VPS13B-203ENST00000358544 PLEKHG5O94827 1062 aa7.41□□□□□ -1.22
VPS13B-203ENST00000358544 AKNAQ7Z591 1439 aa7.41□□□□□ -1.22
VPS13B-203ENST00000358544 MPHOSPH9Q99550 1183 aa7.41□□□□□ -1.22
VPS13B-203ENST00000358544 HOMER1Q86YM7 354 aa7.41□□□□□ -1.22
VPS13B-203ENST00000358544 XPCQ01831 940 aaPredicted RBP7.4□□□□□ -1.22
VPS13B-203ENST00000358544 ICE1Q9Y2F5 2266 aa7.4□□□□□ -1.22
VPS13B-203ENST00000358544 HSP90B2PQ58FF3 399 aa7.4□□□□□ -1.22
VPS13B-203ENST00000358544 USP47Q96K76 1375 aa7.4□□□□□ -1.22
VPS13B-203ENST00000358544 PDCL2Q8N4E4 241 aa7.4□□□□□ -1.22
VPS13B-203ENST00000358544 GOLGA6L19H0YKK7 550 aa7.4□□□□□ -1.22
VPS13B-203ENST00000358544 REC8O95072 547 aa7.4□□□□□ -1.23
VPS13B-203ENST00000358544 HAP1P54257 671 aaPredicted RBP7.4□□□□□ -1.23
VPS13B-203ENST00000358544 FOXD4L6Q3SYB3 417 aaPredicted RBP7.4□□□□□ -1.23
VPS13B-203ENST00000358544 FOXD4L3Q6VB84 417 aaPredicted RBP7.4□□□□□ -1.23
VPS13B-203ENST00000358544 DYNC1I1O14576 645 aa7.4□□□□□ -1.23
VPS13B-203ENST00000358544 LEKR1Q6ZMV7 388 aa7.39□□□□□ -1.23
VPS13B-203ENST00000358544 RDXP35241 583 aaKnown RBP7.39□□□□□ -1.23
VPS13B-203ENST00000358544 BRD4O60885 1362 aaPredicted RBP7.39□□□□□ -1.23
VPS13B-203ENST00000358544 CLCN1P35523 988 aa7.39□□□□□ -1.23
VPS13B-203ENST00000358544 GPATCH3Q96I76 525 aa7.39□□□□□ -1.23
VPS13B-203ENST00000358544 CDC45O75419 566 aa7.39□□□□□ -1.23
VPS13B-203ENST00000358544 DEF6Q9H4E7 631 aa7.39□□□□□ -1.23
VPS13B-203ENST00000358544 HSP90B1P14625 803 aaKnown RBP7.39□□□□□ -1.23
VPS13B-203ENST00000358544 CCDC70Q6NSX1 233 aa7.39□□□□□ -1.23
VPS13B-203ENST00000358544 WASHC2AQ641Q2 1341 aa7.39□□□□□ -1.23
VPS13B-203ENST00000358544 PDIA4P13667 645 aaKnown RBP7.38□□□□□ -1.23
VPS13B-203ENST00000358544 CCP110O43303 1012 aa7.38□□□□□ -1.23
VPS13B-203ENST00000358544 MCM5P33992 734 aa7.38□□□□□ -1.23
VPS13B-203ENST00000358544 PATL2C9JE40 543 aaKnown RBP7.38□□□□□ -1.23
VPS13B-203ENST00000358544 CALCOCO1Q9P1Z2 691 aa7.38□□□□□ -1.23
VPS13B-203ENST00000358544 GTPBP4Q9BZE4 634 aaKnown RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms