RNA–Protein interactions for RNA: ENST00000328560.12

ATP2C1-201, Transcript of ATPase secretory pathway Ca2+ transporting 1, humanhuman

TSL 1 (best) BASIC

Gene ATP2C1, Length 3,484 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2C1-201ENST00000328560 SHANK2Q9UPX8 1470 aa18.91■□□□□ 0.62
ATP2C1-201ENST00000328560 CC2D1BQ5T0F9 858 aaKnown RBP18.9■□□□□ 0.62
ATP2C1-201ENST00000328560 SMG6Q86US8 1419 aaKnown RBP18.9■□□□□ 0.62
ATP2C1-201ENST00000328560 CCDC141Q6ZP82 1450 aa18.89■□□□□ 0.61
ATP2C1-201ENST00000328560 MYBBP1AQ9BQG0 1328 aaKnown RBP18.89■□□□□ 0.61
ATP2C1-201ENST00000328560 EFCAB2Q5VUJ9 269 aa18.88■□□□□ 0.61
ATP2C1-201ENST00000328560 RALBP1Q15311 655 aa18.87■□□□□ 0.61
ATP2C1-201ENST00000328560 FANCIQ9NVI1 1328 aa18.87■□□□□ 0.61
ATP2C1-201ENST00000328560 ARHGAP5Q13017 1502 aa18.86■□□□□ 0.61
ATP2C1-201ENST00000328560 POLR1AO95602 1720 aaPredicted RBP18.85■□□□□ 0.61
ATP2C1-201ENST00000328560 FAM135AQ9P2D6 1515 aa18.84■□□□□ 0.61
ATP2C1-201ENST00000328560 PRKCSHP14314 528 aaPredicted RBP18.84■□□□□ 0.61
ATP2C1-201ENST00000328560 ARHGEF12Q9NZN5 1544 aa18.83■□□□□ 0.61
ATP2C1-201ENST00000328560 SYCP2Q9BX26 1530 aa18.82■□□□□ 0.6
ATP2C1-201ENST00000328560 KTN1Q86UP2 1357 aaKnown RBP18.82■□□□□ 0.6
ATP2C1-201ENST00000328560 SAMD9LQ8IVG5 1584 aa18.82■□□□□ 0.6
ATP2C1-201ENST00000328560 NLRP13Q86W25 1043 aa18.82■□□□□ 0.6
ATP2C1-201ENST00000328560 BRD4O60885 1362 aaPredicted RBP18.81■□□□□ 0.6
ATP2C1-201ENST00000328560 PLEKHH2Q8IVE3 1493 aa18.81■□□□□ 0.6
ATP2C1-201ENST00000328560 PANK3Q9H999 370 aa18.8■□□□□ 0.6
ATP2C1-201ENST00000328560 PRAG1Q86YV5 1406 aa18.79■□□□□ 0.6
ATP2C1-201ENST00000328560 KDM5DQ9BY66 1539 aa18.78■□□□□ 0.6
ATP2C1-201ENST00000328560 ARHGEF5Q12774 1597 aa18.78■□□□□ 0.6
ATP2C1-201ENST00000328560 CDCA7LQ96GN5 454 aa18.76■□□□□ 0.59
ATP2C1-201ENST00000328560 TMF1P82094 1093 aa18.76■□□□□ 0.59
ATP2C1-201ENST00000328560 RCAN3Q9UKA8 241 aa18.76■□□□□ 0.59
ATP2C1-201ENST00000328560 PLA2R1Q13018 1463 aa18.75■□□□□ 0.59
ATP2C1-201ENST00000328560 DISP3Q9P2K9 1392 aa18.75■□□□□ 0.59
ATP2C1-201ENST00000328560 EXOC6Q8TAG9 804 aa18.75■□□□□ 0.59
ATP2C1-201ENST00000328560 CDC42BPBQ9Y5S2 1711 aa18.74■□□□□ 0.59
ATP2C1-201ENST00000328560 PER1O15534 1290 aaPredicted RBP18.74■□□□□ 0.59
ATP2C1-201ENST00000328560 SPAG9O60271 1321 aaKnown RBP18.74■□□□□ 0.59
ATP2C1-201ENST00000328560 LRPPRCP42704 1394 aaKnown RBP18.74■□□□□ 0.59
ATP2C1-201ENST00000328560 TESK2Q96S53 571 aa18.73■□□□□ 0.59
ATP2C1-201ENST00000328560 RNF123Q5XPI4 1314 aa18.73■□□□□ 0.59
ATP2C1-201ENST00000328560 A2MP01023 1474 aa18.73■□□□□ 0.59
ATP2C1-201ENST00000328560 AFAP1Q8N556 730 aa18.73■□□□□ 0.59
ATP2C1-201ENST00000328560 CHD1O14646 1710 aa18.73■□□□□ 0.59
ATP2C1-201ENST00000328560 TTC37Q6PGP7 1564 aa18.73■□□□□ 0.59
ATP2C1-201ENST00000328560 RRP1P56182 461 aaKnown RBP18.73■□□□□ 0.59
ATP2C1-201ENST00000328560 PREX2Q70Z35 1606 aa18.71■□□□□ 0.59
ATP2C1-201ENST00000328560 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.71■□□□□ 0.594e-8■□□□□ 8.6
ATP2C1-201ENST00000328560 ERCC6L2Q5T890 1561 aa18.7■□□□□ 0.58
ATP2C1-201ENST00000328560 ABCC2Q92887 1545 aa18.7■□□□□ 0.58
ATP2C1-201ENST00000328560 PLIN1O60240 522 aa18.7■□□□□ 0.58
ATP2C1-201ENST00000328560 NPM1P06748 294 aaKnown RBP eCLIP18.7■□□□□ 0.58
ATP2C1-201ENST00000328560 PARD3Q8TEW0 1356 aa18.69■□□□□ 0.58
ATP2C1-201ENST00000328560 ERBINQ96RT1 1412 aa18.68■□□□□ 0.58
ATP2C1-201ENST00000328560 NPM2Q86SE8 214 aaKnown RBP18.67■□□□□ 0.58
ATP2C1-201ENST00000328560 KNSTRNQ9Y448 316 aa18.66■□□□□ 0.58
ATP2C1-201ENST00000328560 ANP32AP39687 249 aaKnown RBP18.66■□□□□ 0.58
ATP2C1-201ENST00000328560 NBR1Q14596 966 aa18.66■□□□□ 0.58
ATP2C1-201ENST00000328560 PLCH2O75038 1416 aa18.66■□□□□ 0.58
ATP2C1-201ENST00000328560 TRAPPC8Q9Y2L5 1435 aa18.65■□□□□ 0.58
ATP2C1-201ENST00000328560 NOP58Q9Y2X3 529 aaKnown RBP18.65■□□□□ 0.58
ATP2C1-201ENST00000328560 PAK3O75914 559 aaPredicted RBP18.64■□□□□ 0.57
ATP2C1-201ENST00000328560 GPRASP1Q5JY77 1395 aa18.64■□□□□ 0.57
ATP2C1-201ENST00000328560 TRPM1Q7Z4N2 1603 aa18.63■□□□□ 0.57
ATP2C1-201ENST00000328560 PDE3BQ13370 1112 aa18.62■□□□□ 0.57
ATP2C1-201ENST00000328560 ADAMTS8Q9UP79 889 aa18.62■□□□□ 0.57
ATP2C1-201ENST00000328560 COL17A1Q9UMD9 1497 aaPredicted RBP18.62■□□□□ 0.57
ATP2C1-201ENST00000328560 KIF3BO15066 747 aa18.62■□□□□ 0.57
ATP2C1-201ENST00000328560 WDR43Q15061 677 aaKnown RBP eCLIP18.62■□□□□ 0.57
ATP2C1-201ENST00000328560 DUOX2Q9NRD8 1548 aa18.6■□□□□ 0.57
ATP2C1-201ENST00000328560 KANK1Q14678 1352 aa18.6■□□□□ 0.57
ATP2C1-201ENST00000328560 WASHC2CQ9Y4E1 1318 aa18.59■□□□□ 0.57
ATP2C1-201ENST00000328560 UNC13BO14795 1591 aa18.57■□□□□ 0.56
ATP2C1-201ENST00000328560 SKAP1Q86WV1 359 aa18.57■□□□□ 0.56
ATP2C1-201ENST00000328560 MYO5CQ9NQX4 1742 aa18.56■□□□□ 0.56
ATP2C1-201ENST00000328560 CHGAP10645 457 aaKnown RBP18.56■□□□□ 0.56
ATP2C1-201ENST00000328560 CRBNQ96SW2 442 aa18.56■□□□□ 0.56
ATP2C1-201ENST00000328560 SHROOM2Q13796 1616 aa18.56■□□□□ 0.56
ATP2C1-201ENST00000328560 PPP2R1AP30153 589 aa18.56■□□□□ 0.56
ATP2C1-201ENST00000328560 BCL11AQ9H165 835 aa18.56■□□□□ 0.56
ATP2C1-201ENST00000328560 ZBTB47Q9UFB7 747 aaPredicted RBP18.56■□□□□ 0.56
ATP2C1-201ENST00000328560 MAST1Q9Y2H9 1570 aa18.55■□□□□ 0.56
ATP2C1-201ENST00000328560 E9PCH4 1651 aa18.54■□□□□ 0.56
ATP2C1-201ENST00000328560 PRDM15P57071 1507 aaPredicted RBP18.54■□□□□ 0.56
ATP2C1-201ENST00000328560 CCDC146Q8IYE0 955 aa18.54■□□□□ 0.56
ATP2C1-201ENST00000328560 IQGAP3Q86VI3 1631 aa18.54■□□□□ 0.56
ATP2C1-201ENST00000328560 IPO9Q96P70 1041 aaKnown RBP18.54■□□□□ 0.56
ATP2C1-201ENST00000328560 CDCA8Q53HL2 280 aa18.53■□□□□ 0.56
ATP2C1-201ENST00000328560 CFAP70Q5T0N1 1121 aa18.53■□□□□ 0.56
ATP2C1-201ENST00000328560 C20orf194Q5TEA3 1177 aa18.51■□□□□ 0.55
ATP2C1-201ENST00000328560 PLXNC1O60486 1568 aa18.51■□□□□ 0.55
ATP2C1-201ENST00000328560 UHRF1BP1LA0JNW5 1464 aa18.51■□□□□ 0.55
ATP2C1-201ENST00000328560 SCAPERQ9BY12 1400 aa18.51■□□□□ 0.55
ATP2C1-201ENST00000328560 AMER1Q5JTC6 1135 aaPredicted RBP18.5■□□□□ 0.55
ATP2C1-201ENST00000328560 MAGI2Q86UL8 1455 aa18.5■□□□□ 0.55
ATP2C1-201ENST00000328560 TCERG1O14776 1098 aaKnown RBP18.49■□□□□ 0.55
ATP2C1-201ENST00000328560 PDE4AP27815 886 aa18.49■□□□□ 0.55
ATP2C1-201ENST00000328560 OSCARQ8IYS5 282 aa18.49■□□□□ 0.55
ATP2C1-201ENST00000328560 ZCCHC11Q5TAX3 1644 aaKnown RBP18.49■□□□□ 0.55
ATP2C1-201ENST00000328560 EIF2AK4Q9P2K8 1649 aaKnown RBP18.48■□□□□ 0.55
ATP2C1-201ENST00000328560 ATP10AO60312 1499 aa18.48■□□□□ 0.55
ATP2C1-201ENST00000328560 FANCAO15360 1455 aa18.47■□□□□ 0.55
ATP2C1-201ENST00000328560 STAC3Q96MF2 364 aa18.46■□□□□ 0.55
ATP2C1-201ENST00000328560 SENP3Q9H4L4 574 aaPredicted RBP18.46■□□□□ 0.55
ATP2C1-201ENST00000328560 ABCC1P33527 1531 aa18.46■□□□□ 0.55
ATP2C1-201ENST00000328560 WDR7Q9Y4E6 1490 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms