RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 NGDNQ8NEJ9 315 aaKnown RBP20.08■□□□□ 0.81
USP42-201ENST00000306177 VGFO15240 615 aaPredicted RBP20.07■□□□□ 0.8
USP42-201ENST00000306177 SYNJ1O43426 1573 aa20.07■□□□□ 0.8
USP42-201ENST00000306177 NAP1L5Q96NT1 182 aaPredicted RBP20.07■□□□□ 0.8
USP42-201ENST00000306177 CASKIN1Q8WXD9 1431 aa20.07■□□□□ 0.8
USP42-201ENST00000306177 GRIN2BQ13224 1484 aa20.06■□□□□ 0.8
USP42-201ENST00000306177 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.06■□□□□ 0.8
USP42-201ENST00000306177 ERICH3Q5RHP9 1530 aa20.05■□□□□ 0.8
USP42-201ENST00000306177 HMMRO75330 724 aa20.05■□□□□ 0.8
USP42-201ENST00000306177 TULP1O00294 542 aaPredicted RBP20.05■□□□□ 0.8
USP42-201ENST00000306177 HDAC5Q9UQL6 1122 aa20.05■□□□□ 0.8
USP42-201ENST00000306177 NUTM2FA1L443 756 aa20.04■□□□□ 0.8
USP42-201ENST00000306177 PRKRIP1Q9H875 184 aaPredicted RBP20.04■□□□□ 0.8
USP42-201ENST00000306177 AMPHP49418 695 aa20.03■□□□□ 0.8
USP42-201ENST00000306177 GBP4Q96PP9 640 aa20.03■□□□□ 0.8
USP42-201ENST00000306177 CLUAP1Q96AJ1 413 aa20.03■□□□□ 0.8
USP42-201ENST00000306177 ZNF330Q9Y3S2 320 aaPredicted RBP20.02■□□□□ 0.8
USP42-201ENST00000306177 NCOA2Q15596 1464 aa20.02■□□□□ 0.8
USP42-201ENST00000306177 PTMSP20962 102 aa20.02■□□□□ 0.8
USP42-201ENST00000306177 PRDM2Q13029 1718 aa20.01■□□□□ 0.79
USP42-201ENST00000306177 RTN4Q9NQC3 1192 aaKnown RBP20.01■□□□□ 0.79
USP42-201ENST00000306177 FYCO1Q9BQS8 1478 aa20.01■□□□□ 0.79
USP42-201ENST00000306177 NESP48681 1621 aa20.01■□□□□ 0.79
USP42-201ENST00000306177 ARAP1Q96P48 1450 aa20.01■□□□□ 0.79
USP42-201ENST00000306177 EVC2Q86UK5 1308 aa19.99■□□□□ 0.79
USP42-201ENST00000306177 CGNL1Q0VF96 1302 aa19.98■□□□□ 0.79
USP42-201ENST00000306177 MFAP1P55081 439 aaKnown RBP19.98■□□□□ 0.79
USP42-201ENST00000306177 GPATCH3Q96I76 525 aa19.98■□□□□ 0.79
USP42-201ENST00000306177 GNL2Q13823 731 aaKnown RBP19.97■□□□□ 0.79
USP42-201ENST00000306177 SLC4A10Q6U841 1118 aa19.97■□□□□ 0.79
USP42-201ENST00000306177 SLKQ9H2G2 1235 aaPredicted RBP19.97■□□□□ 0.79
USP42-201ENST00000306177 ANKRD50Q9ULJ7 1429 aa19.97■□□□□ 0.79
USP42-201ENST00000306177 DEKP35659 375 aaKnown RBP19.97■□□□□ 0.79
USP42-201ENST00000306177 MSNP26038 577 aaKnown RBP19.96■□□□□ 0.79
USP42-201ENST00000306177 HMGXB3Q12766 1538 aa19.95■□□□□ 0.78
USP42-201ENST00000306177 RRP7AQ9Y3A4 280 aaKnown RBP19.95■□□□□ 0.78
USP42-201ENST00000306177 CHAF1AQ13111 956 aaPredicted RBP19.94■□□□□ 0.78
USP42-201ENST00000306177 MINK1Q8N4C8 1332 aaPredicted RBP19.94■□□□□ 0.78
USP42-201ENST00000306177 TRIM6-TRIM34B2RNG4 842 aa19.94■□□□□ 0.78
USP42-201ENST00000306177 LTV1Q96GA3 475 aaPredicted RBP19.93■□□□□ 0.78
USP42-201ENST00000306177 GORABQ5T7V8 394 aa19.93■□□□□ 0.78
USP42-201ENST00000306177 TSHZ2Q9NRE2 1034 aa19.93■□□□□ 0.78
USP42-201ENST00000306177 COG3Q96JB2 828 aa19.93■□□□□ 0.78
USP42-201ENST00000306177 MRC2Q9UBG0 1479 aa19.93■□□□□ 0.78
USP42-201ENST00000306177 ZBED9Q6R2W3 1325 aa19.92■□□□□ 0.78
USP42-201ENST00000306177 E9PSI1 815 aa19.92■□□□□ 0.78
USP42-201ENST00000306177 IPO9Q96P70 1041 aaKnown RBP19.92■□□□□ 0.78
USP42-201ENST00000306177 CHMP3Q9Y3E7 222 aa19.92■□□□□ 0.78
USP42-201ENST00000306177 DRC7Q8IY82 874 aa19.92■□□□□ 0.78
USP42-201ENST00000306177 PRXQ9BXM0 1461 aa19.92■□□□□ 0.78
USP42-201ENST00000306177 TOP2BQ02880 1626 aa19.92■□□□□ 0.78
USP42-201ENST00000306177 CC2D2AQ9P2K1 1620 aa19.91■□□□□ 0.78
USP42-201ENST00000306177 TOPBP1Q92547 1522 aa19.91■□□□□ 0.78
USP42-201ENST00000306177 HTATSF1O43719 755 aaKnown RBP19.91■□□□□ 0.78
USP42-201ENST00000306177 FAM69CQ0P6D2 419 aa19.91■□□□□ 0.78
USP42-201ENST00000306177 TAF7LQ5H9L4 462 aa19.9■□□□□ 0.78
USP42-201ENST00000306177 ISY1Q9ULR0 285 aaKnown RBP19.9■□□□□ 0.78
USP42-201ENST00000306177 POLA1P09884 1462 aaPredicted RBP19.89■□□□□ 0.77
USP42-201ENST00000306177 SYNJ2O15056 1496 aa19.88■□□□□ 0.77
USP42-201ENST00000306177 IFT140Q96RY7 1462 aa19.88■□□□□ 0.77
USP42-201ENST00000306177 CENPQQ7L2Z9 268 aaPredicted RBP19.88■□□□□ 0.77
USP42-201ENST00000306177 PRG4Q92954 1404 aaPredicted RBP19.88■□□□□ 0.77
USP42-201ENST00000306177 EFCAB5A4FU69 1503 aa19.87■□□□□ 0.77
USP42-201ENST00000306177 SYAP1Q96A49 352 aaPredicted RBP19.87■□□□□ 0.77
USP42-201ENST00000306177 STAC3Q96MF2 364 aa19.87■□□□□ 0.77
USP42-201ENST00000306177 RRBP1Q9P2E9 1410 aaKnown RBP19.86■□□□□ 0.77
USP42-201ENST00000306177 CCDC9Q9Y3X0 531 aaKnown RBP19.86■□□□□ 0.77
USP42-201ENST00000306177 RRP1P56182 461 aaKnown RBP19.86■□□□□ 0.77
USP42-201ENST00000306177 ARHGAP5Q13017 1502 aa19.86■□□□□ 0.77
USP42-201ENST00000306177 ZKSCAN2Q63HK3 967 aa19.85■□□□□ 0.77
USP42-201ENST00000306177 CCDC7Q96M83 1385 aa19.85■□□□□ 0.77
USP42-201ENST00000306177 GZF1Q9H116 711 aaPredicted RBP19.85■□□□□ 0.77
USP42-201ENST00000306177 KIF7Q2M1P5 1343 aa19.85■□□□□ 0.77
USP42-201ENST00000306177 AFAP1Q8N556 730 aa19.84■□□□□ 0.77
USP42-201ENST00000306177 NGEFQ8N5V2 710 aa19.83■□□□□ 0.76
USP42-201ENST00000306177 BCL2L13Q9BXK5 485 aa19.83■□□□□ 0.76
USP42-201ENST00000306177 ELL2O00472 640 aaPredicted RBP19.82■□□□□ 0.76
USP42-201ENST00000306177 APAF1O14727 1248 aa19.82■□□□□ 0.76
USP42-201ENST00000306177 PLIN1O60240 522 aa19.81■□□□□ 0.76
USP42-201ENST00000306177 HSP90B1P14625 803 aaKnown RBP19.81■□□□□ 0.76
USP42-201ENST00000306177 ST18O60284 1047 aa19.8■□□□□ 0.76
USP42-201ENST00000306177 TMX4Q9H1E5 349 aaPredicted RBP19.8■□□□□ 0.76
USP42-201ENST00000306177 EXOC6Q8TAG9 804 aa19.8■□□□□ 0.76
USP42-201ENST00000306177 DIAPH1O60610 1272 aaKnown RBP19.79■□□□□ 0.76
USP42-201ENST00000306177 C1orf141Q5JVX7 400 aa19.79■□□□□ 0.76
USP42-201ENST00000306177 MIA2Q96PC5 1412 aa19.79■□□□□ 0.76
USP42-201ENST00000306177 EHBP1L1Q8N3D4 1523 aa19.79■□□□□ 0.76
USP42-201ENST00000306177 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.78■□□□□ 0.76
USP42-201ENST00000306177 FAM161AQ3B820 660 aa19.78■□□□□ 0.76
USP42-201ENST00000306177 CRBNQ96SW2 442 aa19.78■□□□□ 0.76
USP42-201ENST00000306177 KIAA2012Q0VF49 1180 aa19.78■□□□□ 0.76
USP42-201ENST00000306177 CSPP1Q1MSJ5 1256 aa19.78■□□□□ 0.76
USP42-201ENST00000306177 SNAPC4Q5SXM2 1469 aa19.77■□□□□ 0.75
USP42-201ENST00000306177 DNMBPQ6XZF7 1577 aa19.76■□□□□ 0.75
USP42-201ENST00000306177 GOLGA6L3A6NEY3 463 aa19.76■□□□□ 0.75
USP42-201ENST00000306177 ANKRD45Q5TZF3 282 aa19.76■□□□□ 0.75
USP42-201ENST00000306177 COG6Q9Y2V7 657 aa19.76■□□□□ 0.75
USP42-201ENST00000306177 TEFQ10587 303 aa19.76■□□□□ 0.75
USP42-201ENST00000306177 CNTLNQ9NXG0 1405 aa19.75■□□□□ 0.75
USP42-201ENST00000306177 PDE4AP27815 886 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms