RNA–Protein interactions for RNA: ENST00000262539.7

PTPN3-201, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 5 BASIC

Gene PTPN3, Length 6,832 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-201ENST00000262539 CLASP1Q7Z460 1538 aa11.08□□□□□ -0.64
PTPN3-201ENST00000262539 FANCAO15360 1455 aa11.07□□□□□ -0.64
PTPN3-201ENST00000262539 VGFO15240 615 aaPredicted RBP11.06□□□□□ -0.64
PTPN3-201ENST00000262539 SHROOM2Q13796 1616 aa11.06□□□□□ -0.64
PTPN3-201ENST00000262539 DENND4BO75064 1496 aaPredicted RBP11.06□□□□□ -0.64
PTPN3-201ENST00000262539 ATP10AO60312 1499 aa11.06□□□□□ -0.64
PTPN3-201ENST00000262539 RTL5Q5HYW3 569 aaPredicted RBP11.05□□□□□ -0.64
PTPN3-201ENST00000262539 ASXL2Q76L83 1435 aa11.05□□□□□ -0.64
PTPN3-201ENST00000262539 CHGAP10645 457 aaKnown RBP11.05□□□□□ -0.64
PTPN3-201ENST00000262539 KDM5DQ9BY66 1539 aa11.05□□□□□ -0.64
PTPN3-201ENST00000262539 USP47Q96K76 1375 aa11.04□□□□□ -0.64
PTPN3-201ENST00000262539 UHRF1BP1Q6BDS2 1440 aa11.04□□□□□ -0.64
PTPN3-201ENST00000262539 CNTLNQ9NXG0 1405 aa11.04□□□□□ -0.64
PTPN3-201ENST00000262539 CCDC7Q96M83 1385 aa11.03□□□□□ -0.64
PTPN3-201ENST00000262539 MRS2Q9HD23 443 aa11.03□□□□□ -0.64
PTPN3-201ENST00000262539 MAST1Q9Y2H9 1570 aa11.02□□□□□ -0.64
PTPN3-201ENST00000262539 PUS7Q96PZ0 661 aaKnown RBP11.02□□□□□ -0.64
PTPN3-201ENST00000262539 AFAP1Q8N556 730 aa11.01□□□□□ -0.65
PTPN3-201ENST00000262539 TMC1Q8TDI8 760 aa11.01□□□□□ -0.65
PTPN3-201ENST00000262539 MAGI2Q86UL8 1455 aa11.01□□□□□ -0.65
PTPN3-201ENST00000262539 GCC2Q8IWJ2 1684 aa11.01□□□□□ -0.65
PTPN3-201ENST00000262539 GPRASP1Q5JY77 1395 aa11□□□□□ -0.65
PTPN3-201ENST00000262539 KDM2AQ9Y2K7 1162 aa11□□□□□ -0.65
PTPN3-201ENST00000262539 NLRP13Q86W25 1043 aa11□□□□□ -0.65
PTPN3-201ENST00000262539 KNSTRNQ9Y448 316 aa11□□□□□ -0.65
PTPN3-201ENST00000262539 MLH3Q9UHC1 1453 aa11□□□□□ -0.65
PTPN3-201ENST00000262539 PDE3BQ13370 1112 aa11□□□□□ -0.65
PTPN3-201ENST00000262539 PZPP20742 1482 aa10.99□□□□□ -0.65
PTPN3-201ENST00000262539 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.98□□□□□ -0.65
PTPN3-201ENST00000262539 RGL3Q3MIN7 710 aa10.98□□□□□ -0.65
PTPN3-201ENST00000262539 RALGAPBQ86X10 1494 aa10.98□□□□□ -0.65
PTPN3-201ENST00000262539 PLEKHG5O94827 1062 aa10.98□□□□□ -0.65
PTPN3-201ENST00000262539 POGZQ7Z3K3 1410 aa10.97□□□□□ -0.65
PTPN3-201ENST00000262539 PRKRIP1Q9H875 184 aaPredicted RBP10.97□□□□□ -0.65
PTPN3-201ENST00000262539 SYCP2Q9BX26 1530 aa10.96□□□□□ -0.65
PTPN3-201ENST00000262539 GGT6Q6P531 493 aa10.96□□□□□ -0.65
PTPN3-201ENST00000262539 CFAP53Q96M91 514 aa10.96□□□□□ -0.65
PTPN3-201ENST00000262539 A2MP01023 1474 aa10.96□□□□□ -0.65
PTPN3-201ENST00000262539 FAM135AQ9P2D6 1515 aa10.96□□□□□ -0.65
PTPN3-201ENST00000262539 ZBTB7CA1YPR0 619 aa10.96□□□□□ -0.66
PTPN3-201ENST00000262539 PLXNC1O60486 1568 aa10.96□□□□□ -0.66
PTPN3-201ENST00000262539 CYB5RLQ6IPT4 315 aa10.95□□□□□ -0.66
PTPN3-201ENST00000262539 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.95□□□□□ -0.66
PTPN3-201ENST00000262539 HNRNPUQ00839 825 aaKnown RBP eCLIP10.95□□□□□ -0.66
PTPN3-201ENST00000262539 FAM69CQ0P6D2 419 aa10.94□□□□□ -0.66
PTPN3-201ENST00000262539 ABCC1P33527 1531 aa10.94□□□□□ -0.66
PTPN3-201ENST00000262539 PREX2Q70Z35 1606 aa10.94□□□□□ -0.66
PTPN3-201ENST00000262539 INSRP06213 1382 aa10.94□□□□□ -0.66
PTPN3-201ENST00000262539 CFAP74Q9C0B2 1584 aa10.94□□□□□ -0.66
PTPN3-201ENST00000262539 TRAPPC8Q9Y2L5 1435 aa10.93□□□□□ -0.66
PTPN3-201ENST00000262539 GTF3C3Q9Y5Q9 886 aa10.93□□□□□ -0.66
PTPN3-201ENST00000262539 KIF7Q2M1P5 1343 aa10.93□□□□□ -0.66
PTPN3-201ENST00000262539 BRD4O60885 1362 aaPredicted RBP10.92□□□□□ -0.66
PTPN3-201ENST00000262539 SBNO2Q9Y2G9 1366 aa10.92□□□□□ -0.66
PTPN3-201ENST00000262539 MYBBP1AQ9BQG0 1328 aaKnown RBP10.92□□□□□ -0.66
PTPN3-201ENST00000262539 FOXD1Q16676 465 aa10.92□□□□□ -0.66
PTPN3-201ENST00000262539 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.92□□□□□ -0.66
PTPN3-201ENST00000262539 ST20-MTHFSA0A0A6YYL1 179 aa10.91□□□□□ -0.66
PTPN3-201ENST00000262539 PNNQ9H307 717 aaKnown RBP10.91□□□□□ -0.66
PTPN3-201ENST00000262539 ARHGAP31Q2M1Z3 1444 aa10.91□□□□□ -0.66
PTPN3-201ENST00000262539 ATP7AQ04656 1500 aa10.91□□□□□ -0.66
PTPN3-201ENST00000262539 WDR43Q15061 677 aaKnown RBP eCLIP10.9□□□□□ -0.66
PTPN3-201ENST00000262539 NBPF8Q3BBV2 869 aa10.9□□□□□ -0.66
PTPN3-201ENST00000262539 PTPRTO14522 1441 aa10.9□□□□□ -0.66
PTPN3-201ENST00000262539 NINLQ9Y2I6 1382 aa10.9□□□□□ -0.66
PTPN3-201ENST00000262539 CENPJQ9HC77 1338 aaPredicted RBP10.9□□□□□ -0.67
PTPN3-201ENST00000262539 EIF2AK4Q9P2K8 1649 aaKnown RBP10.89□□□□□ -0.67
PTPN3-201ENST00000262539 NPC1L1Q9UHC9 1359 aa10.88□□□□□ -0.67
PTPN3-201ENST00000262539 NUDCQ9Y266 331 aa10.88□□□□□ -0.67
PTPN3-201ENST00000262539 TERF2IPQ9NYB0 399 aa10.88□□□□□ -0.67
PTPN3-201ENST00000262539 HAP1P54257 671 aaPredicted RBP10.88□□□□□ -0.67
PTPN3-201ENST00000262539 ADGBQ8N7X0 1667 aa10.88□□□□□ -0.67
PTPN3-201ENST00000262539 C14orf37Q86TY3 774 aa10.88□□□□□ -0.67
PTPN3-201ENST00000262539 PRAG1Q86YV5 1406 aa10.87□□□□□ -0.67
PTPN3-201ENST00000262539 EVC2Q86UK5 1308 aa10.87□□□□□ -0.67
PTPN3-201ENST00000262539 SCAF11Q99590 1463 aaKnown RBP10.87□□□□□ -0.67
PTPN3-201ENST00000262539 ZBED9Q6R2W3 1325 aa10.87□□□□□ -0.67
PTPN3-201ENST00000262539 CHD1O14646 1710 aa10.87□□□□□ -0.67
PTPN3-201ENST00000262539 NPM2Q86SE8 214 aaKnown RBP10.86□□□□□ -0.67
PTPN3-201ENST00000262539 PRDM15P57071 1507 aaPredicted RBP10.86□□□□□ -0.67
PTPN3-201ENST00000262539 LMTK2Q8IWU2 1503 aa10.86□□□□□ -0.67
PTPN3-201ENST00000262539 ABCA9Q8IUA7 1624 aa10.85□□□□□ -0.67
PTPN3-201ENST00000262539 SENP3Q9H4L4 574 aaPredicted RBP10.85□□□□□ -0.67
PTPN3-201ENST00000262539 SAMD9LQ8IVG5 1584 aa10.85□□□□□ -0.67
PTPN3-201ENST00000262539 POGKQ9P215 609 aa10.85□□□□□ -0.67
PTPN3-201ENST00000262539 ATAD2Q6PL18 1390 aa10.84□□□□□ -0.67
PTPN3-201ENST00000262539 SPATA31E1Q6ZUB1 1445 aa10.83□□□□□ -0.67
PTPN3-201ENST00000262539 HDGFL2Q7Z4V5 671 aaPredicted RBP10.83□□□□□ -0.68
PTPN3-201ENST00000262539 EID1Q9Y6B2 187 aa10.83□□□□□ -0.68
PTPN3-201ENST00000262539 CGNL1Q0VF96 1302 aa10.83□□□□□ -0.68
PTPN3-201ENST00000262539 MYO5CQ9NQX4 1742 aa10.83□□□□□ -0.68
PTPN3-201ENST00000262539 NSD2O96028 1365 aa10.83□□□□□ -0.68
PTPN3-201ENST00000262539 NEURL4Q96JN8 1562 aa10.83□□□□□ -0.68
PTPN3-201ENST00000262539 MS4A1P11836 297 aa10.83□□□□□ -0.68
PTPN3-201ENST00000262539 CHMP4AQ9BY43 222 aa10.82□□□□□ -0.68
PTPN3-201ENST00000262539 MYOM2P54296 1465 aa10.82□□□□□ -0.68
PTPN3-201ENST00000262539 C14orf93Q9H972 538 aaKnown RBP10.81□□□□□ -0.68
PTPN3-201ENST00000262539 ZFYVE9O95405 1425 aa10.81□□□□□ -0.68
PTPN3-201ENST00000262539 UNC13BO14795 1591 aa10.81□□□□□ -0.68
PTPN3-201ENST00000262539 FAM9BQ8IZU0 186 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms