RNA–Protein interactions for RNA: ENST00000257290.9

PDGFRA-201, Transcript of platelet derived growth factor receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFRA, Length 6,576 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-201ENST00000257290 FMN1Q68DA7 1419 aa8.45□□□□□ -1.06
PDGFRA-201ENST00000257290 DDX10Q13206 875 aaKnown RBP8.45□□□□□ -1.06
PDGFRA-201ENST00000257290 FAM9BQ8IZU0 186 aa8.45□□□□□ -1.06
PDGFRA-201ENST00000257290 UNC13AQ9UPW8 1703 aa8.44□□□□□ -1.06
PDGFRA-201ENST00000257290 NFKBIBQ15653 356 aa8.44□□□□□ -1.06
PDGFRA-201ENST00000257290 FGD5Q6ZNL6 1462 aa8.44□□□□□ -1.06
PDGFRA-201ENST00000257290 TSPY4P0CV99 314 aa8.44□□□□□ -1.06
PDGFRA-201ENST00000257290 TSPY10P0CW01 314 aa8.44□□□□□ -1.06
PDGFRA-201ENST00000257290 KCNA4P22459 653 aa8.44□□□□□ -1.06
PDGFRA-201ENST00000257290 CARMIL2Q6F5E8 1435 aa8.43□□□□□ -1.06
PDGFRA-201ENST00000257290 TIGD1Q96MW7 591 aa8.43□□□□□ -1.06
PDGFRA-201ENST00000257290 CHIC2Q9UKJ5 165 aa8.43□□□□□ -1.06
PDGFRA-201ENST00000257290 TMX4Q9H1E5 349 aaPredicted RBP8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 MPHOSPH10O00566 681 aaKnown RBP8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 PAK3O75914 559 aaPredicted RBP8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 ANAPC15P60006 121 aa8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 MEX3CQ5U5Q3 659 aaKnown RBP8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 CTR9Q6PD62 1173 aa8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 MRE11P49959 708 aa8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 TNNT1P13805 278 aa8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 MNS1Q8NEH6 495 aa8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 HSP90AB3PQ58FF7 597 aa8.41□□□□□ -1.06
PDGFRA-201ENST00000257290 HTATSF1O43719 755 aaKnown RBP8.41□□□□□ -1.06
PDGFRA-201ENST00000257290 RUSC2Q8N2Y8 1516 aa8.41□□□□□ -1.06
PDGFRA-201ENST00000257290 ARHGAP35Q9NRY4 1499 aa8.41□□□□□ -1.06
PDGFRA-201ENST00000257290 ESPNB1AK53 854 aa8.4□□□□□ -1.06
PDGFRA-201ENST00000257290 CCNB3Q8WWL7 1395 aa8.4□□□□□ -1.06
PDGFRA-201ENST00000257290 TOP2BQ02880 1626 aa8.4□□□□□ -1.06
PDGFRA-201ENST00000257290 CLCN1P35523 988 aa8.4□□□□□ -1.06
PDGFRA-201ENST00000257290 KIF21BO75037 1637 aa8.4□□□□□ -1.07
PDGFRA-201ENST00000257290 HMGN5P82970 282 aaKnown RBP8.4□□□□□ -1.07
PDGFRA-201ENST00000257290 SUDS3Q9H7L9 328 aaPredicted RBP8.39□□□□□ -1.07
PDGFRA-201ENST00000257290 ZBTB12Q9Y330 459 aaPredicted RBP8.39□□□□□ -1.07
PDGFRA-201ENST00000257290 SYNJ1O43426 1573 aa8.39□□□□□ -1.07
PDGFRA-201ENST00000257290 USP8P40818 1118 aa8.39□□□□□ -1.07
PDGFRA-201ENST00000257290 UQCRHLA0A096LP55 91 aa8.39□□□□□ -1.07
PDGFRA-201ENST00000257290 UQCRHP07919 91 aa8.39□□□□□ -1.07
PDGFRA-201ENST00000257290 GBP4Q96PP9 640 aa8.39□□□□□ -1.07
PDGFRA-201ENST00000257290 SETSIPP0DME0 302 aa8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 TMEM132AQ24JP5 1023 aa8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 STAC3Q96MF2 364 aa8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 CFDP1Q9UEE9 299 aaPredicted RBP8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 RDXP35241 583 aaKnown RBP8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 H0YHG0 523 aa8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 SARNPP82979 210 aaKnown RBP8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 ERICH3Q5RHP9 1530 aa8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 TMCO5BA8MYB1 307 aa8.37□□□□□ -1.07
PDGFRA-201ENST00000257290 SLC4A1APQ9BWU0 796 aaKnown RBP8.37□□□□□ -1.07
PDGFRA-201ENST00000257290 GAPVD1Q14C86 1478 aa8.37□□□□□ -1.07
PDGFRA-201ENST00000257290 SOX12O15370 315 aa8.36□□□□□ -1.07
PDGFRA-201ENST00000257290 DDX11L8A8MPP1 907 aa8.36□□□□□ -1.07
PDGFRA-201ENST00000257290 MYCBPQ99417 103 aaPredicted RBP8.36□□□□□ -1.07
PDGFRA-201ENST00000257290 IGF1RP08069 1367 aa8.36□□□□□ -1.07
PDGFRA-201ENST00000257290 LIG1P18858 919 aa8.36□□□□□ -1.07
PDGFRA-201ENST00000257290 GIMAP7Q8NHV1 300 aa8.36□□□□□ -1.07
PDGFRA-201ENST00000257290 RRP7BPQ9NSQ0 103 aa8.36□□□□□ -1.07
PDGFRA-201ENST00000257290 MRC2Q9UBG0 1479 aa8.36□□□□□ -1.07
PDGFRA-201ENST00000257290 RAD54L2Q9Y4B4 1467 aa8.35□□□□□ -1.07
PDGFRA-201ENST00000257290 TRIM6-TRIM34B2RNG4 842 aa8.35□□□□□ -1.07
PDGFRA-201ENST00000257290 TRIM34Q9BYJ4 488 aa8.35□□□□□ -1.07
PDGFRA-201ENST00000257290 CENPJQ9HC77 1338 aaPredicted RBP8.35□□□□□ -1.07
PDGFRA-201ENST00000257290 CBX1P83916 185 aa8.35□□□□□ -1.07
PDGFRA-201ENST00000257290 ISY1Q9ULR0 285 aaKnown RBP8.35□□□□□ -1.07
PDGFRA-201ENST00000257290 CCER2I3L3R5 266 aa8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 NRDCO43847 1150 aa8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 UTP14CQ5TAP6 766 aaKnown RBP8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 KCNH8Q96L42 1107 aa8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 FHOD3Q2V2M9 1422 aa8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 CCP110O43303 1012 aa8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 ESF1Q9H501 851 aaKnown RBP8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 DIAPH3Q9NSV4 1193 aa8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 DNMBPQ6XZF7 1577 aa8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 CUX1P39880 1505 aa8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 LAMC3Q9Y6N6 1575 aa8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 NBPF1Q3BBV0 1214 aa8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 SKOR2Q2VWA4 1001 aaPredicted RBP8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 SLKQ9H2G2 1235 aaPredicted RBP8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 GTF2E1P29083 439 aaPredicted RBP8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 RBM25P49756 843 aaKnown RBP8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 WASHC2CQ9Y4E1 1318 aa8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 DYNC1I1O14576 645 aa8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 PLCB2Q00722 1185 aa8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 PDCL2Q8N4E4 241 aa8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.32□□□□□ -1.08
PDGFRA-201ENST00000257290 CCDC94Q9BW85 323 aaPredicted RBP8.32□□□□□ -1.08
PDGFRA-201ENST00000257290 TOPBP1Q92547 1522 aa8.32□□□□□ -1.08
PDGFRA-201ENST00000257290 KANK4Q5T7N3 995 aaPredicted RBP8.32□□□□□ -1.08
PDGFRA-201ENST00000257290 SETD5Q9C0A6 1442 aa8.32□□□□□ -1.08
PDGFRA-201ENST00000257290 IFT140Q96RY7 1462 aa8.32□□□□□ -1.08
PDGFRA-201ENST00000257290 NAP1L1P55209 391 aaKnown RBP8.32□□□□□ -1.08
PDGFRA-201ENST00000257290 CCDC91Q7Z6B0 441 aa8.31□□□□□ -1.08
PDGFRA-201ENST00000257290 TERF2IPQ9NYB0 399 aa8.31□□□□□ -1.08
PDGFRA-201ENST00000257290 KNSTRNQ9Y448 316 aa8.31□□□□□ -1.08
PDGFRA-201ENST00000257290 CCDC173Q0VFZ6 552 aa8.31□□□□□ -1.08
PDGFRA-201ENST00000257290 HSCBQ8IWL3 235 aa8.31□□□□□ -1.08
PDGFRA-201ENST00000257290 NESP48681 1621 aa8.31□□□□□ -1.08
PDGFRA-201ENST00000257290 CCDC18Q5T9S5 1454 aa8.31□□□□□ -1.08
PDGFRA-201ENST00000257290 ZRSR1Q15695 479 aaKnown RBP8.31□□□□□ -1.08
PDGFRA-201ENST00000257290 CEP120Q8N960 986 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms