RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 PREX2Q70Z35 1606 aa25.33■■□□□ 1.64
CPSF3-201ENST00000238112 MSH5O43196 834 aa25.32■■□□□ 1.64
CPSF3-201ENST00000238112 KTN1Q86UP2 1357 aaKnown RBP25.3■■□□□ 1.64
CPSF3-201ENST00000238112 CDC42BPBQ9Y5S2 1711 aa25.3■■□□□ 1.64
CPSF3-201ENST00000238112 CCDC144AA2RUR9 1427 aa25.29■■□□□ 1.64
CPSF3-201ENST00000238112 RALBP1Q15311 655 aa25.28■■□□□ 1.64
CPSF3-201ENST00000238112 MYBBP1AQ9BQG0 1328 aaKnown RBP25.28■■□□□ 1.64
CPSF3-201ENST00000238112 BRD4O60885 1362 aaPredicted RBP25.27■■□□□ 1.64
CPSF3-201ENST00000238112 RNF123Q5XPI4 1314 aa25.26■■□□□ 1.63
CPSF3-201ENST00000238112 SYCP2Q9BX26 1530 aa25.24■■□□□ 1.63
CPSF3-201ENST00000238112 PRAG1Q86YV5 1406 aa25.24■■□□□ 1.63
CPSF3-201ENST00000238112 ERICH6Q7L0X2 663 aa25.23■■□□□ 1.63
CPSF3-201ENST00000238112 ARHGAP5Q13017 1502 aa25.23■■□□□ 1.63
CPSF3-201ENST00000238112 LRPPRCP42704 1394 aaKnown RBP25.22■■□□□ 1.63
CPSF3-201ENST00000238112 E9PCH4 1651 aa25.22■■□□□ 1.63
CPSF3-201ENST00000238112 MAST1Q9Y2H9 1570 aa25.21■■□□□ 1.63
CPSF3-201ENST00000238112 TRPM1Q7Z4N2 1603 aa25.2■■□□□ 1.62
CPSF3-201ENST00000238112 SENP3-EIF4A1A0A087X0R7 540 aa25.2■■□□□ 1.62
CPSF3-201ENST00000238112 UNC13BO14795 1591 aa25.19■■□□□ 1.62
CPSF3-201ENST00000238112 RGL3Q3MIN7 710 aa25.19■■□□□ 1.62
CPSF3-201ENST00000238112 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.19■■□□□ 1.621e-6■■□□□ 12.1
CPSF3-201ENST00000238112 TTC37Q6PGP7 1564 aa25.18■■□□□ 1.62
CPSF3-201ENST00000238112 CCDC136Q96JN2 1154 aa25.17■■□□□ 1.62
CPSF3-201ENST00000238112 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.16■■□□□ 1.62
CPSF3-201ENST00000238112 PLA2R1Q13018 1463 aa25.15■■□□□ 1.62
CPSF3-201ENST00000238112 PLEKHH2Q8IVE3 1493 aa25.14■■□□□ 1.62
CPSF3-201ENST00000238112 NLRP13Q86W25 1043 aa25.14■■□□□ 1.61
CPSF3-201ENST00000238112 GPRASP1Q5JY77 1395 aa25.14■■□□□ 1.61
CPSF3-201ENST00000238112 A2MP01023 1474 aa25.13■■□□□ 1.61
CPSF3-201ENST00000238112 NBPF1Q3BBV0 1214 aa25.13■■□□□ 1.61
CPSF3-201ENST00000238112 PLXNC1O60486 1568 aa25.12■■□□□ 1.61
CPSF3-201ENST00000238112 PARD3Q8TEW0 1356 aa25.12■■□□□ 1.61
CPSF3-201ENST00000238112 IQGAP3Q86VI3 1631 aa25.11■■□□□ 1.61
CPSF3-201ENST00000238112 CHD1O14646 1710 aa25.1■■□□□ 1.61
CPSF3-201ENST00000238112 MYO5CQ9NQX4 1742 aa25.09■■□□□ 1.61
CPSF3-201ENST00000238112 LAMC1P11047 1609 aa25.08■■□□□ 1.61
CPSF3-201ENST00000238112 DUOX2Q9NRD8 1548 aa25.08■■□□□ 1.61
CPSF3-201ENST00000238112 SHROOM2Q13796 1616 aa25.08■■□□□ 1.6
CPSF3-201ENST00000238112 COL17A1Q9UMD9 1497 aaPredicted RBP25.08■■□□□ 1.6
CPSF3-201ENST00000238112 ABCC2Q92887 1545 aa25.07■■□□□ 1.6
CPSF3-201ENST00000238112 EIF2AK4Q9P2K8 1649 aaKnown RBP25.07■■□□□ 1.6
CPSF3-201ENST00000238112 PRDM15P57071 1507 aaPredicted RBP25.07■■□□□ 1.6
CPSF3-201ENST00000238112 PER1O15534 1290 aaPredicted RBP25.05■■□□□ 1.6
CPSF3-201ENST00000238112 ERBINQ96RT1 1412 aa25.04■■□□□ 1.6
CPSF3-201ENST00000238112 WASHC2CQ9Y4E1 1318 aa25.04■■□□□ 1.6
CPSF3-201ENST00000238112 TESK2Q96S53 571 aa25.03■■□□□ 1.6
CPSF3-201ENST00000238112 ATP10AO60312 1499 aa25.03■■□□□ 1.6
CPSF3-201ENST00000238112 DISP3Q9P2K9 1392 aa25.03■■□□□ 1.6
CPSF3-201ENST00000238112 RRP1P56182 461 aaKnown RBP25.02■■□□□ 1.6
CPSF3-201ENST00000238112 PDE3BQ13370 1112 aa25.02■■□□□ 1.6
CPSF3-201ENST00000238112 MAGI2Q86UL8 1455 aa25.01■■□□□ 1.59
CPSF3-201ENST00000238112 TMF1P82094 1093 aa25.01■■□□□ 1.59
CPSF3-201ENST00000238112 SALL2Q9Y467 1007 aaPredicted RBP25■■□□□ 1.59
CPSF3-201ENST00000238112 RCAN3Q9UKA8 241 aa25■■□□□ 1.59
CPSF3-201ENST00000238112 CC2D1BQ5T0F9 858 aaKnown RBP24.99■■□□□ 1.59
CPSF3-201ENST00000238112 PLCH2O75038 1416 aa24.98■■□□□ 1.59
CPSF3-201ENST00000238112 ERCC6L2Q5T890 1561 aa24.98■■□□□ 1.59
CPSF3-201ENST00000238112 EFCAB2Q5VUJ9 269 aa24.97■■□□□ 1.59
CPSF3-201ENST00000238112 PANK3Q9H999 370 aa24.97■■□□□ 1.59
CPSF3-201ENST00000238112 INSRP06213 1382 aa24.93■■□□□ 1.58
CPSF3-201ENST00000238112 NOP58Q9Y2X3 529 aaKnown RBP24.91■■□□□ 1.58
CPSF3-201ENST00000238112 ABCC1P33527 1531 aa24.91■■□□□ 1.58
CPSF3-201ENST00000238112 ZMYM4Q5VZL5 1548 aa24.91■■□□□ 1.58
CPSF3-201ENST00000238112 EXOC6Q8TAG9 804 aa24.9■■□□□ 1.58
CPSF3-201ENST00000238112 RNF17Q9BXT8 1623 aaKnown RBP24.9■■□□□ 1.58
CPSF3-201ENST00000238112 ANP32AP39687 249 aaKnown RBP24.89■■□□□ 1.58
CPSF3-201ENST00000238112 BLMP54132 1417 aaPredicted RBP24.89■■□□□ 1.58
CPSF3-201ENST00000238112 ZCCHC11Q5TAX3 1644 aaKnown RBP24.88■■□□□ 1.57
CPSF3-201ENST00000238112 TRAPPC8Q9Y2L5 1435 aa24.88■■□□□ 1.57
CPSF3-201ENST00000238112 CDCA7LQ96GN5 454 aa24.86■■□□□ 1.57
CPSF3-201ENST00000238112 SPAG9O60271 1321 aaKnown RBP24.85■■□□□ 1.57
CPSF3-201ENST00000238112 UHRF1BP1LA0JNW5 1464 aa24.84■■□□□ 1.57
CPSF3-201ENST00000238112 MYT1LQ9UL68 1186 aa24.84■■□□□ 1.57
CPSF3-201ENST00000238112 MADDQ8WXG6 1647 aa24.82■■□□□ 1.56
CPSF3-201ENST00000238112 KNSTRNQ9Y448 316 aa24.81■■□□□ 1.56
CPSF3-201ENST00000238112 RTEL1-TNFRSF6BF6WH68 1400 aa24.81■■□□□ 1.56
CPSF3-201ENST00000238112 TRPM2O94759 1503 aa24.8■■□□□ 1.56
CPSF3-201ENST00000238112 IPO9Q96P70 1041 aaKnown RBP24.8■■□□□ 1.56
CPSF3-201ENST00000238112 CDCA8Q53HL2 280 aa24.8■■□□□ 1.56
CPSF3-201ENST00000238112 STAC3Q96MF2 364 aa24.79■■□□□ 1.56
CPSF3-201ENST00000238112 WDR7Q9Y4E6 1490 aa24.79■■□□□ 1.56
CPSF3-201ENST00000238112 TCERG1O14776 1098 aaKnown RBP24.79■■□□□ 1.56
CPSF3-201ENST00000238112 IQGAP1P46940 1657 aa24.77■■□□□ 1.56
CPSF3-201ENST00000238112 PAK3O75914 559 aaPredicted RBP24.77■■□□□ 1.56
CPSF3-201ENST00000238112 AFAP1Q8N556 730 aa24.77■■□□□ 1.56
CPSF3-201ENST00000238112 SCAF11Q99590 1463 aaKnown RBP24.76■■□□□ 1.55
CPSF3-201ENST00000238112 ZFYVE16Q7Z3T8 1539 aa24.76■■□□□ 1.55
CPSF3-201ENST00000238112 BCL11AQ9H165 835 aa24.75■■□□□ 1.55
CPSF3-201ENST00000238112 PTPRTO14522 1441 aa24.75■■□□□ 1.55
CPSF3-201ENST00000238112 SCAPERQ9BY12 1400 aa24.75■■□□□ 1.55
CPSF3-201ENST00000238112 ADAMTS8Q9UP79 889 aa24.75■■□□□ 1.55
CPSF3-201ENST00000238112 SPHKAPQ2M3C7 1700 aa24.75■■□□□ 1.55
CPSF3-201ENST00000238112 ARAP3Q8WWN8 1544 aa24.74■■□□□ 1.55
CPSF3-201ENST00000238112 CLASP1Q7Z460 1538 aa24.74■■□□□ 1.55
CPSF3-201ENST00000238112 WDR43Q15061 677 aaKnown RBP eCLIP24.74■■□□□ 1.55
CPSF3-201ENST00000238112 CEP152O94986 1710 aa24.74■■□□□ 1.55
CPSF3-201ENST00000238112 PPP2R1AP30153 589 aa24.73■■□□□ 1.55
CPSF3-201ENST00000238112 PLIN1O60240 522 aa24.73■■□□□ 1.55
CPSF3-201ENST00000238112 ZBTB47Q9UFB7 747 aaPredicted RBP24.73■■□□□ 1.55
CPSF3-201ENST00000238112 KANK1Q14678 1352 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms