RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeastyeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DNL4YOR005C YPS1P32329 569 aa2.4□□□□□ -2.03
DNL4YOR005C MUD1P32605 298 aaKnown RBP2.4□□□□□ -2.03
DNL4YOR005C FAA2P39518 744 aa2.4□□□□□ -2.03
DNL4YOR005C NPT1P39683 429 aaKnown RBP2.4□□□□□ -2.03
DNL4YOR005C YDL186WP48568 277 aa2.4□□□□□ -2.03
DNL4YOR005C BIO4P53630 237 aa2.4□□□□□ -2.03
DNL4YOR005C MNT4P53745 580 aa2.4□□□□□ -2.03
DNL4YOR005C THI7Q05998 598 aa2.4□□□□□ -2.03
DNL4YOR005C SEC10Q06245 871 aa2.4□□□□□ -2.03
DNL4YOR005C BSP1Q06604 576 aa2.4□□□□□ -2.03
DNL4YOR005C YLR111WQ12528 110 aa2.4□□□□□ -2.03
DNL4YOR005C SPO24Q3E752 67 aa2.4□□□□□ -2.03
DNL4YOR005C FKS1P38631 1876 aaKnown RBP2.4□□□□□ -2.03
DNL4YOR005C CMK2P22517 447 aa2.4□□□□□ -2.03
DNL4YOR005C RPI1P23250 407 aaKnown RBP2.4□□□□□ -2.03
DNL4YOR005C YCR016WP25617 290 aaKnown RBP2.4□□□□□ -2.03
DNL4YOR005C YUR1P26725 428 aa2.4□□□□□ -2.03
DNL4YOR005C VMA6P32366 345 aaKnown RBP2.4□□□□□ -2.03
DNL4YOR005C APE2P32454 952 aaKnown RBP2.4□□□□□ -2.03
DNL4YOR005C CSG2P35206 410 aa2.4□□□□□ -2.03
DNL4YOR005C STV1P37296 890 aa2.4□□□□□ -2.03
DNL4YOR005C RIM2P38127 377 aa2.4□□□□□ -2.03
DNL4YOR005C PEX32P38292 413 aa2.4□□□□□ -2.03
DNL4YOR005C FCY21P40039 528 aa2.4□□□□□ -2.03
DNL4YOR005C YER079WP40052 210 aaKnown RBP2.4□□□□□ -2.03
DNL4YOR005C SER33P40510 469 aa2.4□□□□□ -2.03
DNL4YOR005C LOH1P47055 219 aa2.4□□□□□ -2.03
DNL4YOR005C MRK1P50873 501 aa2.4□□□□□ -2.03
DNL4YOR005C GPI15P53961 229 aa2.4□□□□□ -2.03
DNL4YOR005C SED5Q01590 340 aa2.4□□□□□ -2.03
DNL4YOR005C SMP3Q04174 516 aa2.4□□□□□ -2.03
DNL4YOR005C YDR278CQ05612 105 aa2.4□□□□□ -2.03
DNL4YOR005C YLR173WQ06247 608 aa2.4□□□□□ -2.03
DNL4YOR005C SSK1Q07084 712 aa2.4□□□□□ -2.03
DNL4YOR005C YET3Q07451 203 aa2.4□□□□□ -2.03
DNL4YOR005C YDL218WQ07629 317 aa2.4□□□□□ -2.03
DNL4YOR005C RPN8Q08723 338 aaKnown RBP2.4□□□□□ -2.03
DNL4YOR005C RBD2Q12270 262 aa2.4□□□□□ -2.03
DNL4YOR005C FMP16Q12497 93 aa2.4□□□□□ -2.03
DNL4YOR005C OPI3P05375 206 aa2.39□□□□□ -2.03
DNL4YOR005C DST1P07273 309 aa2.39□□□□□ -2.03
DNL4YOR005C CAR2P07991 424 aaKnown RBP2.39□□□□□ -2.03
DNL4YOR005C TUB1P09733 447 aaKnown RBP2.39□□□□□ -2.03
DNL4YOR005C RPS16AP0CX51 143 aaKnown RBP2.39□□□□□ -2.03
DNL4YOR005C RPS16BP0CX52 143 aaKnown RBP2.39□□□□□ -2.03
DNL4YOR005C RSR1P13856 272 aa2.39□□□□□ -2.03
DNL4YOR005C FBA1P14540 359 aaKnown RBP2.39□□□□□ -2.03
DNL4YOR005C DBR1P24309 405 aaKnown RBP2.39□□□□□ -2.03
DNL4YOR005C YCR007CP25354 239 aa2.39□□□□□ -2.03
DNL4YOR005C CSM1P25651 190 aa2.39□□□□□ -2.03
DNL4YOR005C BUB3P26449 341 aa2.39□□□□□ -2.03
DNL4YOR005C SKG6P32900 734 aaPredicted RBP2.39□□□□□ -2.03
DNL4YOR005C KKQ8P36004 724 aa2.39□□□□□ -2.03
DNL4YOR005C FLO10P36170 1169 aa2.39□□□□□ -2.03
DNL4YOR005C YPK3P38070 525 aa2.39□□□□□ -2.03
DNL4YOR005C RFS1P38234 210 aaKnown RBP2.39□□□□□ -2.03
DNL4YOR005C APD1P38281 316 aa2.39□□□□□ -2.03
DNL4YOR005C MSS2P40990 351 aa2.39□□□□□ -2.03
DNL4YOR005C GET1P53192 235 aa2.39□□□□□ -2.03
DNL4YOR005C GPI1P53306 609 aa2.39□□□□□ -2.03
DNL4YOR005C NUP100Q02629 959 aa2.39□□□□□ -2.03
DNL4YOR005C MMT1Q03218 510 aa2.39□□□□□ -2.03
DNL4YOR005C CAC2Q04199 468 aa2.39□□□□□ -2.03
DNL4YOR005C GAL83Q04739 417 aa2.39□□□□□ -2.03
DNL4YOR005C DIC1Q06143 298 aa2.39□□□□□ -2.03
DNL4YOR005C SYO1Q07395 620 aa2.39□□□□□ -2.03
DNL4YOR005C YPR022CQ12139 1133 aa2.39□□□□□ -2.03
DNL4YOR005C HTZ1Q12692 134 aaKnown RBP2.39□□□□□ -2.03
DNL4YOR005C HKR1P41809 1802 aa2.39□□□□□ -2.03
DNL4YOR005C RPL18AP0CX49 186 aaKnown RBP2.39□□□□□ -2.03
DNL4YOR005C RPL18BP0CX50 186 aaKnown RBP2.39□□□□□ -2.03
DNL4YOR005C POL30P15873 258 aaKnown RBP2.39□□□□□ -2.03
DNL4YOR005C DOA4P32571 926 aa2.39□□□□□ -2.03
DNL4YOR005C RAD23P32628 398 aaKnown RBP2.39□□□□□ -2.03
DNL4YOR005C PAD1P33751 242 aaKnown RBP RIP-Chip data2.39□□□□□ -2.03not detected
DNL4YOR005C PDX3P38075 228 aaKnown RBP2.39□□□□□ -2.03
DNL4YOR005C RTC2P38279 296 aa2.39□□□□□ -2.03
DNL4YOR005C YBP1P38315 674 aa2.39□□□□□ -2.03
DNL4YOR005C AGP3P43548 558 aa2.39□□□□□ -2.03
DNL4YOR005C AZR1P50080 613 aa2.39□□□□□ -2.03
DNL4YOR005C MPS1P54199 764 aa2.39□□□□□ -2.03
DNL4YOR005C SLD5Q03406 294 aa2.39□□□□□ -2.03
DNL4YOR005C MRPL35Q06678 367 aa2.39□□□□□ -2.03
DNL4YOR005C PUS9Q12069 462 aa2.39□□□□□ -2.03
DNL4YOR005C YLL056CQ12177 298 aa2.39□□□□□ -2.03
DNL4YOR005C FRE7Q12333 620 aa2.39□□□□□ -2.03
DNL4YOR005C FSH3Q99369 266 aa2.39□□□□□ -2.03
DNL4YOR005C YPR117WQ06116 2489 aa2.38□□□□□ -2.03
DNL4YOR005C RAD10P06838 210 aa2.38□□□□□ -2.03
DNL4YOR005C SNF4P12904 322 aa2.38□□□□□ -2.03
DNL4YOR005C STF2P16965 84 aa2.38□□□□□ -2.03
DNL4YOR005C CDC43P18898 376 aa2.38□□□□□ -2.03
DNL4YOR005C RPB4P20433 221 aaPredicted RBP2.38□□□□□ -2.03
DNL4YOR005C SLY1P22213 666 aa2.38□□□□□ -2.03
DNL4YOR005C AEP1P32493 518 aa2.38□□□□□ -2.03
DNL4YOR005C TOA2P32774 122 aa2.38□□□□□ -2.03
DNL4YOR005C MSN4P33749 630 aa2.38□□□□□ -2.03
DNL4YOR005C YBR241CP38142 488 aa2.38□□□□□ -2.03
DNL4YOR005C YBR242WP38331 238 aa2.38□□□□□ -2.03
DNL4YOR005C YBR285WP38354 144 aa2.38□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 22.7 ms