RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP42	YDR235W	PEX27	Q08580	376 aa		0.51	□□□□□ -2.33
PRP42	YDR235W	MMT2	Q08970	484 aa		0.51	□□□□□ -2.33
PRP42	YDR235W	UBA3	Q99344	299 aa		0.51	□□□□□ -2.33
PRP42	YDR235W	CPT1	P17898	393 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	COX10	P21592	462 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	DBR1	P24309	405 aa	Known RBP	0.5	□□□□□ -2.33
PRP42	YDR235W	MSK1	P32048	576 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	EFB1	P32471	206 aa	Known RBP	0.5	□□□□□ -2.33
PRP42	YDR235W	SRB2	P34162	210 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	YKL071W	P36086	256 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	YBL028C	P38202	106 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	YMR262W	P38430	313 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	MLH1	P38920	769 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	GDI1	P39958	451 aa	Known RBP	0.5	□□□□□ -2.33
PRP42	YDR235W	SNL1	P40548	159 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	COS4	P43542	379 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	EPL1	P43572	832 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	HIT1	P46973	164 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	YJL055W	P47044	245 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	YML6	P51998	286 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	NRM1	P53718	249 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	TRM82	Q03774	444 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	SXM1	Q04175	944 aa	Known RBP	0.5	□□□□□ -2.33
PRP42	YDR235W	UTP15	Q04305	513 aa	Known RBP	0.5	□□□□□ -2.33
PRP42	YDR235W	AIM33	Q04516	312 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	FRE8	Q12209	686 aa		0.5	□□□□□ -2.33
PRP42	YDR235W	RPL6B	P05739	176 aa	Known RBP	0.49	□□□□□ -2.33
PRP42	YDR235W	RPS23A	P0CX29	145 aa	Known RBP	0.49	□□□□□ -2.33
PRP42	YDR235W	RPS23B	P0CX30	145 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	PSO2	P30620	661 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	VAM7	P32912	316 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	PPQ1	P32945	549 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	TIP20	P33891	701 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	PEX5	P35056	612 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	PCH2	P38126	564 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	TAE1	P38340	232 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	RBG1	P39729	369 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	YNL320W	P42840	284 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	YFR018C	P43599	363 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	ASG7	P46993	209 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	EFM3	P47163	339 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	NAS6	P50086	228 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	MPS2	P53159	387 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	LST7	P53237	242 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	RET3	P53600	189 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	PRM1	P53835	661 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	SUR7	P54003	302 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	VPS9	P54787	451 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	RPL6A	Q02326	176 aa	Known RBP	0.49	□□□□□ -2.33
PRP42	YDR235W	INP1	Q03694	420 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	YMR244W	Q04018	355 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	SMP3	Q04174	516 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	VTI1	Q04338	217 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	APC4	Q04601	652 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	SLM3	Q12093	417 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	GLE1	Q12315	538 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	PAR32	Q12515	295 aa	Known RBP	0.49	□□□□□ -2.33
PRP42	YDR235W	FSH3	Q99369	266 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	VPS63	O13549	108 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	CUP2	P15315	225 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	DAL5	P15365	543 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	CKI1	P20485	582 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	FAR1	P21268	830 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	MKK1	P32490	508 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	MDL1	P33310	695 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	ZRT3	P34240	503 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	MPE1	P35728	441 aa	Known RBP	0.49	□□□□□ -2.33
PRP42	YDR235W	EFM1	P38732	585 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	ATG7	P38862	630 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	LCP5	P40079	357 aa	Predicted RBP	0.49	□□□□□ -2.33
PRP42	YDR235W	YIL054W	P40524	105 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	MLC1	P53141	149 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	SMD1	Q02260	146 aa	Predicted RBP	0.49	□□□□□ -2.33
PRP42	YDR235W	SCS7	Q03529	384 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	RRB1	Q04225	511 aa	Known RBP	0.49	□□□□□ -2.33
PRP42	YDR235W	GMC1	Q04399	608 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	YPR078C	Q06813	372 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	YFH1	Q07540	174 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	ALE1	Q08548	619 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	APC5	Q08683	685 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	YDR018C	Q12185	396 aa		0.49	□□□□□ -2.33
PRP42	YDR235W	MHP1	P43638	1398 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	RPS16A	P0CX51	143 aa	Known RBP	0.48	□□□□□ -2.33
PRP42	YDR235W	RPS16B	P0CX52	143 aa	Known RBP	0.48	□□□□□ -2.33
PRP42	YDR235W	MAS1	P10507	462 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	CTA1	P15202	515 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	HPR1	P17629	752 aa	Known RBP	0.48	□□□□□ -2.33
PRP42	YDR235W	ARF2	P19146	181 aa	Known RBP	0.48	□□□□□ -2.33
PRP42	YDR235W	MRPL20	P22354	195 aa	Predicted RBP	0.48	□□□□□ -2.33
PRP42	YDR235W	GRR1	P24814	1151 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	ITR2	P30606	609 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	YPS1	P32329	569 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	ALK2	P32789	676 aa	Predicted RBP	0.48	□□□□□ -2.33
PRP42	YDR235W	TKL2	P33315	681 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	MRPS5	P33759	307 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	SDH4	P37298	181 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	IST2	P38250	946 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	LRP1	P38801	184 aa	Known RBP	0.48	□□□□□ -2.33
PRP42	YDR235W	ECM14	P38836	430 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	SCC4	P40090	624 aa		0.48	□□□□□ -2.33

Retrieved 100 of 5,963 RNA–protein pairs in 77 ms