RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 MORN1Q5T089 497 aa20.15■□□□□ 0.82
CLN3-263ENST00000637871 PDXDC1Q6P996 788 aa20.15■□□□□ 0.82
CLN3-263ENST00000637871 UIMC1Q96RL1 719 aa20.15■□□□□ 0.82
CLN3-263ENST00000637871 CCDC94Q9BW85 323 aaPredicted RBP20.15■□□□□ 0.82
CLN3-263ENST00000637871 AGO4Q9HCK5 861 aaKnown RBP20.15■□□□□ 0.82
CLN3-263ENST00000637871 PLCB1Q9NQ66 1216 aa20.15■□□□□ 0.82
CLN3-263ENST00000637871 CYP39A1Q9NYL5 469 aa20.15■□□□□ 0.82
CLN3-263ENST00000637871 COL20A1Q9P218 1284 aa20.15■□□□□ 0.82
CLN3-263ENST00000637871 FBXO40Q9UH90 709 aa20.15■□□□□ 0.82
CLN3-263ENST00000637871 TRIM17Q9Y577 477 aa20.15■□□□□ 0.82
CLN3-263ENST00000637871 GCNT3O95395 438 aa20.14■□□□□ 0.81
CLN3-263ENST00000637871 JAK3P52333 1124 aa20.14■□□□□ 0.81
CLN3-263ENST00000637871 VAV2P52735 878 aa20.14■□□□□ 0.81
CLN3-263ENST00000637871 RPS6P62753 249 aaKnown RBP20.14■□□□□ 0.81
CLN3-263ENST00000637871 RNF207Q6ZRF8 634 aa20.14■□□□□ 0.81
CLN3-263ENST00000637871 MYCT1Q8N699 235 aa20.14■□□□□ 0.81
CLN3-263ENST00000637871 CARD6Q9BX69 1037 aa20.14■□□□□ 0.81
CLN3-263ENST00000637871 GJD2Q9UKL4 321 aa20.14■□□□□ 0.81
CLN3-263ENST00000637871 GTPBP10A4D1E9 387 aaKnown RBP20.13■□□□□ 0.81
CLN3-263ENST00000637871 POTEB2H3BUK9 544 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 FANCGO15287 622 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 DKC1O60832 514 aaKnown RBP eCLIP20.13■□□□□ 0.81
CLN3-263ENST00000637871 STAM2O75886 525 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 TUBBP07437 444 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 CYP2B6P20813 491 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 FLT3LGP49771 235 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 SNRPFP62306 86 aaKnown RBP20.13■□□□□ 0.81
CLN3-263ENST00000637871 CACNB1Q02641 598 aaPredicted RBP20.13■□□□□ 0.81
CLN3-263ENST00000637871 RAD51AP2Q09MP3 1159 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 KCNMA1Q12791 1236 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 KIF5AQ12840 1032 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 CCDC122Q5T0U0 273 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 GPR161Q8N6U8 529 aaKnown RBP20.13■□□□□ 0.81
CLN3-263ENST00000637871 TMEM174Q8WUU8 243 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 BAP1Q92560 729 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 JAKMIP2Q96AA8 810 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 LXNQ9BS40 222 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 FGFBP2Q9BYJ0 223 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 FAM207AQ9NSI2 230 aaPredicted RBP20.13■□□□□ 0.81
CLN3-263ENST00000637871 FBXL5Q9UKA1 691 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 REXO2Q9Y3B8 237 aaKnown RBP20.13■□□□□ 0.81
CLN3-263ENST00000637871 ASTN1O14525 1302 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 SLC15A5A6NIM6 579 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 CHMP2AO43633 222 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 AFPP02771 609 aaKnown RBP20.13■□□□□ 0.81
CLN3-263ENST00000637871 KLK7P49862 253 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 KRT76Q01546 638 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 MTMR1Q13613 665 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 SLC9C1Q4G0N8 1177 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 HS2ST1Q7LGA3 356 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 FMNL3Q8IVF7 1028 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 SLC35F6Q8N357 371 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 NPLOC4Q8TAT6 608 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 PIGOQ8TEQ8 1089 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 RABGGTAQ92696 567 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 GOLGA1Q92805 767 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 DEF6Q9H4E7 631 aa20.13■□□□□ 0.81
CLN3-263ENST00000637871 ANO9A1A5B4 782 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 DHX15O43143 795 aaKnown RBP20.12■□□□□ 0.81
CLN3-263ENST00000637871 NR3C1P04150 777 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 XRCC5P13010 732 aaKnown RBP20.12■□□□□ 0.81
CLN3-263ENST00000637871 ANXA13P27216 316 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 QARSP47897 775 aaKnown RBP20.12■□□□□ 0.81
CLN3-263ENST00000637871 UBXN2AP68543 259 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 KCNH2Q12809 1159 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 MAP2K5Q13163 448 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 PGM5Q15124 567 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 ELF2Q15723 593 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 CCL14Q16627 93 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 SFMBT2Q5VUG0 894 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 RRAGAQ7L523 313 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 ZNF720Q7Z2F6 126 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 SRGAP1Q7Z6B7 1085 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 NLRX1Q86UT6 975 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 FAM178BQ8IXR5 827 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 USP6NLQ92738 828 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 GPRASP2Q96D09 838 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 FGD4Q96M96 766 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 LARSQ9P2J5 1176 aaKnown RBP20.12■□□□□ 0.81
CLN3-263ENST00000637871 SRRDQ9UH36 339 aa20.12■□□□□ 0.81
CLN3-263ENST00000637871 BZW2Q9Y6E2 419 aaKnown RBP20.12■□□□□ 0.81
CLN3-263ENST00000637871 DNAJC25-GNG10A0A024R161 153 aa20.11■□□□□ 0.81
CLN3-263ENST00000637871 STRNO43815 780 aa20.11■□□□□ 0.81
CLN3-263ENST00000637871 PRPF6O94906 941 aaKnown RBP20.11■□□□□ 0.81
CLN3-263ENST00000637871 SERPING1P05155 500 aa20.11■□□□□ 0.81
CLN3-263ENST00000637871 MYBP10242 640 aa20.11■□□□□ 0.81
CLN3-263ENST00000637871 CCND2P30279 289 aa20.11■□□□□ 0.81
CLN3-263ENST00000637871 PSMC2P35998 433 aaKnown RBP20.11■□□□□ 0.81
CLN3-263ENST00000637871 CASP5P51878 434 aa20.11■□□□□ 0.81
CLN3-263ENST00000637871 ERCC6LQ2NKX8 1250 aa20.11■□□□□ 0.81
CLN3-263ENST00000637871 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.11■□□□□ 0.81
CLN3-263ENST00000637871 DPP9Q86TI2 863 aa20.11■□□□□ 0.81
CLN3-263ENST00000637871 SLC9A9Q8IVB4 645 aa20.11■□□□□ 0.81
CLN3-263ENST00000637871 C4orf19Q8IY42 314 aa20.11■□□□□ 0.81
CLN3-263ENST00000637871 CDHR1Q96JP9 859 aa20.11■□□□□ 0.81
CLN3-263ENST00000637871 IWS1Q96ST2 819 aa20.11■□□□□ 0.81
CLN3-263ENST00000637871 RMDN3Q96TC7 470 aa20.11■□□□□ 0.81
CLN3-263ENST00000637871 SENP7Q9BQF6 1050 aa20.11■□□□□ 0.81
CLN3-263ENST00000637871 PDCD2LQ9BRP1 358 aa20.11■□□□□ 0.81
CLN3-263ENST00000637871 PXMP2Q9NR77 195 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms