RNA–Protein interactions for RNA: ENST00000578995.5

SMARCE1-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, human

TSL 2

Gene SMARCE1, Length 534 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCE1-215	ENST00000578995	ACAD9	Q9H845	621 aa		4.37	□□□□□ -1.71
SMARCE1-215	ENST00000578995	BARHL2	Q9NY43	387 aa		4.37	□□□□□ -1.71
SMARCE1-215	ENST00000578995	CCPG1	Q9ULG6	757 aa		4.37	□□□□□ -1.71
SMARCE1-215	ENST00000578995	LIMCH1	Q9UPQ0	1083 aa		4.37	□□□□□ -1.71
SMARCE1-215	ENST00000578995	DIS3	Q9Y2L1	958 aa	Known RBP	4.37	□□□□□ -1.71
SMARCE1-215	ENST00000578995	RBM47	A0AV96	593 aa	Known RBP	4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	TGFBR3L	H3BV60	316 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	hCG_1984214	I3L0E3	225 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	LINC01387	J3KSC0	135 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	CTAGE5	O15320	804 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	STRN	O43815	780 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	CYBA	P13498	195 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	PTGS1	P23219	599 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	DDIT3	P35638	169 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	PREP	P48147	710 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	ALDH5A1	P51649	535 aa	Predicted RBP	4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	PRMT2	P55345	433 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	RPS6	P62753	249 aa	Known RBP	4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	CCNA1	P78396	465 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	MRPS9	P82933	396 aa	Known RBP	4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	SEMA3F	Q13275	785 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	BAAT	Q14032	418 aa	Predicted RBP	4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	PLCL1	Q15111	1095 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	USH1G	Q495M9	461 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	EARS2	Q5JPH6	523 aa	Known RBP	4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	TMEM63B	Q5T3F8	832 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	OLFML2B	Q68BL8	750 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	FBXO46	Q6PJ61	603 aa	Predicted RBP	4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	DBX2	Q6ZNG2	339 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	NOL8	Q76FK4	1167 aa	Known RBP	4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	NCAPG2	Q86XI2	1143 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	CCDC83	Q8IWF9	413 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	CCDC82	Q8N4S0	544 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	SAMD3	Q8N6K7	520 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	ZNF713	Q8N859	430 aa	Predicted RBP	4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	DAGLB	Q8NCG7	672 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	RRP36	Q96EU6	259 aa	Known RBP	4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	ZNF333	Q96JL9	665 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	TAAR1	Q96RJ0	339 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	MMP19	Q99542	508 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	LLPH	Q9BRT6	129 aa	Known RBP	4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	PHF20	Q9BVI0	1012 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	SLC26A6	Q9BXS9	759 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	MCOLN1	Q9GZU1	580 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	SLK	Q9H2G2	1235 aa	Predicted RBP	4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	VAT1L	Q9HCJ6	419 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	SH2B1	Q9NRF2	756 aa	Predicted RBP	4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	HOMER2	Q9NSB8	354 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	KCNK4	Q9NYG8	393 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	VPS54	Q9P1Q0	977 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	FBXO40	Q9UH90	709 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	TRIM17	Q9Y577	477 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	PCDHA1	Q9Y5I3	950 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	PDE4DIP	Q5VU43	2346 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	PFAS	O15067	1338 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	TET1	Q8NFU7	2136 aa		4.36	□□□□□ -1.71
SMARCE1-215	ENST00000578995	PDCD11	Q14690	1871 aa	Known RBP	4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	ATG2A	Q2TAZ0	1938 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	MICAL3	Q7RTP6	2002 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	IGLV3-22	A0A075B6J6	115 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	LOC102724159	A0A0B4J2E5	919 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	CCDC196	A0A1B0GTZ2	297 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	KIF28P	B7ZC32	967 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995		J3QW42	95 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	GAS2	O43903	313 aa	Known RBP	4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	ADCY3	O60266	1144 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	LZTS3	O60299	673 aa	Predicted RBP	4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	PSPN	O60542	156 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	SASH3	O75995	380 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	ARIH2	O95376	493 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	DEXI	O95424	95 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	FCER1A	P12319	257 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	CYP2B6	P20813	491 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	MAP4	P27816	1152 aa	Known RBP	4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	HOXA13	P31271	388 aa	Predicted RBP	4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	CYP2C19	P33261	490 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	RGS2	P41220	211 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	MCM2	P49736	904 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	NKX3-2	P78367	333 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	CACNB2	Q08289	660 aa	Predicted RBP	4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	IK	Q13123	557 aa	Predicted RBP	4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	PLS1	Q14651	629 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	PWP2	Q15269	919 aa	Known RBP	4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	UBE2S	Q16763	222 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	TAPT1	Q6NXT6	567 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	CCDC62	Q6P9F0	684 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	USP17L6P	Q6QN14	398 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	SYNE3	Q6ZMZ3	975 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	RNF207	Q6ZRF8	634 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	HEATR3	Q7Z4Q2	680 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	UBE2Q1	Q7Z7E8	422 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	TEX2	Q8IWB9	1127 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	FAM177A1	Q8N128	213 aa	Predicted RBP	4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	MSL3	Q8N5Y2	521 aa	Known RBP	4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	KLHL23	Q8NBE8	558 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	DNER	Q8NFT8	737 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	RASGRP4	Q8TDF6	673 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	SH3TC2	Q8TF17	1288 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	PIBF1	Q8WXW3	757 aa		4.35	□□□□□ -1.71
SMARCE1-215	ENST00000578995	LENG9	Q96B70	501 aa		4.35	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms