RNA–Protein interactions for RNA: ENST00000578995.5

SMARCE1-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 2

Gene SMARCE1, Length 534 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-215ENST00000578995 AEBP2Q6ZN18 517 aaPredicted RBP18.16■□□□□ 0.5
SMARCE1-215ENST00000578995 CHIC1Q5VXU3 224 aa17.07■□□□□ 0.32
SMARCE1-215ENST00000578995 SENP3Q9H4L4 574 aaPredicted RBP15.68■□□□□ 0.1
SMARCE1-215ENST00000578995 PHF23Q9BUL5 403 aaPredicted RBP15.35■□□□□ 0.05
SMARCE1-215ENST00000578995 POTEDQ86YR6 584 aa14.67□□□□□ -0.06
SMARCE1-215ENST00000578995 FOXD1Q16676 465 aa14.64□□□□□ -0.07
SMARCE1-215ENST00000578995 MSH5O43196 834 aa14.01□□□□□ -0.17
SMARCE1-215ENST00000578995 PIAS4Q8N2W9 510 aaPredicted RBP13.56□□□□□ -0.24
SMARCE1-215ENST00000578995 PPP6R1Q9UPN7 881 aa13.17□□□□□ -0.3
SMARCE1-215ENST00000578995 ADRA2BP18089 450 aa13.11□□□□□ -0.31
SMARCE1-215ENST00000578995 PLPPR3Q6T4P5 718 aa13.1□□□□□ -0.31
SMARCE1-215ENST00000578995 CACNB1Q02641 598 aaPredicted RBP12.38□□□□□ -0.43
SMARCE1-215ENST00000578995 DMRT2Q9Y5R5 561 aa12.32□□□□□ -0.44
SMARCE1-215ENST00000578995 MAPK8IP2Q13387 824 aaPredicted RBP12.21□□□□□ -0.45
SMARCE1-215ENST00000578995 SCAF1Q9H7N4 1312 aaKnown RBP12.11□□□□□ -0.47
SMARCE1-215ENST00000578995 DCAF8L1A6NGE4 600 aa11.85□□□□□ -0.51
SMARCE1-215ENST00000578995 RNF39Q9H2S5 420 aa11.85□□□□□ -0.51
SMARCE1-215ENST00000578995 C1QBPQ07021 282 aaKnown RBP11.68□□□□□ -0.54
SMARCE1-215ENST00000578995 HOXD11P31277 338 aaPredicted RBP11.62□□□□□ -0.55
SMARCE1-215ENST00000578995 POTEHQ6S545 545 aa11.39□□□□□ -0.59
SMARCE1-215ENST00000578995 DNAJC5BQ9UF47 199 aa11.39□□□□□ -0.59
SMARCE1-215ENST00000578995 RNF216Q9NWF9 866 aaPredicted RBP11.38□□□□□ -0.59
SMARCE1-215ENST00000578995 PPP4R3CPQ6ZMV5 832 aa11.37□□□□□ -0.59
SMARCE1-215ENST00000578995 CNKSR2Q8WXI2 1034 aa11.33□□□□□ -0.6
SMARCE1-215ENST00000578995 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.09□□□□□ -0.639e-9■■□□□ 12.3
SMARCE1-215ENST00000578995 DSG3P32926 999 aa10.88□□□□□ -0.67
SMARCE1-215ENST00000578995 CAPN15O75808 1086 aa10.82□□□□□ -0.68
SMARCE1-215ENST00000578995 NCBP3Q53F19 620 aaKnown RBP10.81□□□□□ -0.68
SMARCE1-215ENST00000578995 SPINK5Q9NQ38 1064 aaPredicted RBP10.76□□□□□ -0.69
SMARCE1-215ENST00000578995 U3KPZ7 1027 aaPredicted RBP10.75□□□□□ -0.69
SMARCE1-215ENST00000578995 NPM3O75607 178 aaKnown RBP10.57□□□□□ -0.72
SMARCE1-215ENST00000578995 APLP2Q06481 763 aa10.5□□□□□ -0.73
SMARCE1-215ENST00000578995 TRHP20396 242 aaPredicted RBP10.49□□□□□ -0.73
SMARCE1-215ENST00000578995 ZNF219Q9P2Y4 722 aaPredicted RBP10.49□□□□□ -0.73
SMARCE1-215ENST00000578995 ABCB7O75027 752 aa10.48□□□□□ -0.73
SMARCE1-215ENST00000578995 RBM42Q9BTD8 480 aaKnown RBP10.48□□□□□ -0.73
SMARCE1-215ENST00000578995 CHRDL2Q6WN34 429 aa10.44□□□□□ -0.74
SMARCE1-215ENST00000578995 SP7Q8TDD2 431 aaPredicted RBP10.39□□□□□ -0.75
SMARCE1-215ENST00000578995 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.32□□□□□ -0.76
SMARCE1-215ENST00000578995 HNRNPUL2Q1KMD3 747 aaKnown RBP10.32□□□□□ -0.76
SMARCE1-215ENST00000578995 SLC4A2P04920 1241 aa10.23□□□□□ -0.77
SMARCE1-215ENST00000578995 SAMD1Q6SPF0 538 aaPredicted RBP10.2□□□□□ -0.78
SMARCE1-215ENST00000578995 POLA2Q14181 598 aa10.07□□□□□ -0.8
SMARCE1-215ENST00000578995 AKT1S1Q96B36 256 aa10.07□□□□□ -0.8
SMARCE1-215ENST00000578995 HAX1O00165 279 aa10.06□□□□□ -0.8
SMARCE1-215ENST00000578995 PIP4P2Q8N4L2 257 aa10.03□□□□□ -0.8
SMARCE1-215ENST00000578995 REM2Q8IYK8 340 aaPredicted RBP9.95□□□□□ -0.82
SMARCE1-215ENST00000578995 FXR2P51116 673 aaKnown RBP eCLIP9.89□□□□□ -0.83
SMARCE1-215ENST00000578995 ZBTB12Q9Y330 459 aaPredicted RBP9.88□□□□□ -0.83
SMARCE1-215ENST00000578995 MYCNP04198 464 aaPredicted RBP9.85□□□□□ -0.83
SMARCE1-215ENST00000578995 PITPNM1O00562 1244 aa9.83□□□□□ -0.84
SMARCE1-215ENST00000578995 EVX2Q03828 476 aa9.81□□□□□ -0.84
SMARCE1-215ENST00000578995 KCNA4P22459 653 aa9.8□□□□□ -0.84
SMARCE1-215ENST00000578995 LHX8Q68G74 356 aa9.74□□□□□ -0.85
SMARCE1-215ENST00000578995 OSCARQ8IYS5 282 aa9.74□□□□□ -0.85
SMARCE1-215ENST00000578995 PLSCR2Q9NRY7 297 aa9.65□□□□□ -0.86
SMARCE1-215ENST00000578995 GABBR2O75899 941 aa9.61□□□□□ -0.87
SMARCE1-215ENST00000578995 C19orf67A6NJJ6 358 aa9.59□□□□□ -0.87
SMARCE1-215ENST00000578995 PRKAR2AP13861 404 aaKnown RBP9.59□□□□□ -0.87
SMARCE1-215ENST00000578995 ATF5Q9Y2D1 282 aaPredicted RBP9.58□□□□□ -0.88
SMARCE1-215ENST00000578995 SPDYE2BA6NHP3 402 aa9.49□□□□□ -0.89
SMARCE1-215ENST00000578995 SPDYE6P0CI01 402 aa9.49□□□□□ -0.89
SMARCE1-215ENST00000578995 SPDYE2Q495Y8 402 aa9.49□□□□□ -0.89
SMARCE1-215ENST00000578995 SPDYE1Q8NFV5 336 aaPredicted RBP9.48□□□□□ -0.89
SMARCE1-215ENST00000578995 CLEC11AQ9Y240 323 aa9.48□□□□□ -0.89
SMARCE1-215ENST00000578995 NISCHQ9Y2I1 1504 aa9.38□□□□□ -0.91
SMARCE1-215ENST00000578995 FOXD4L1Q9NU39 408 aa9.38□□□□□ -0.91
SMARCE1-215ENST00000578995 FBLN2P98095 1184 aa9.36□□□□□ -0.91
SMARCE1-215ENST00000578995 POTEIP0CG38 1075 aa9.35□□□□□ -0.91
SMARCE1-215ENST00000578995 CLCN6P51797 869 aa9.34□□□□□ -0.91
SMARCE1-215ENST00000578995 CHADLQ6NUI6 762 aa9.32□□□□□ -0.92
SMARCE1-215ENST00000578995 CD44P16070 742 aaKnown RBP9.26□□□□□ -0.93
SMARCE1-215ENST00000578995 DCBLD2Q96PD2 775 aa9.26□□□□□ -0.93
SMARCE1-215ENST00000578995 ZNF692Q9BU19 519 aaPredicted RBP9.26□□□□□ -0.93
SMARCE1-215ENST00000578995 SSUH2Q9Y2M2 353 aa9.26□□□□□ -0.93
SMARCE1-215ENST00000578995 PRR29P0C7W0 189 aa9.25□□□□□ -0.93
SMARCE1-215ENST00000578995 POTEMA6NI47 508 aa9.2□□□□□ -0.94
SMARCE1-215ENST00000578995 ATXN8OSP0DMR3 200 aa9.19□□□□□ -0.94
SMARCE1-215ENST00000578995 SLC4A1APQ9BWU0 796 aaKnown RBP9.16□□□□□ -0.94
SMARCE1-215ENST00000578995 PCDH10Q9P2E7 1040 aa9.16□□□□□ -0.94
SMARCE1-215ENST00000578995 POTEGQ6S5H5 508 aa9.15□□□□□ -0.94
SMARCE1-215ENST00000578995 OTUD5Q96G74 571 aa9.15□□□□□ -0.94
SMARCE1-215ENST00000578995 FARP1Q9Y4F1 1045 aaPredicted RBP9.15□□□□□ -0.94
SMARCE1-215ENST00000578995 MKRN4PQ13434 485 aaPredicted RBP9.11□□□□□ -0.95
SMARCE1-215ENST00000578995 PABPN1Q86U42 306 aaKnown RBP eCLIP9.09□□□□□ -0.95
SMARCE1-215ENST00000578995 ZNF579Q8NAF0 562 aaKnown RBP9.09□□□□□ -0.95
SMARCE1-215ENST00000578995 POTEB2H3BUK9 544 aa9.03□□□□□ -0.96
SMARCE1-215ENST00000578995 ZRANB1Q9UGI0 708 aa9.03□□□□□ -0.96
SMARCE1-215ENST00000578995 GALR2O43603 387 aaPredicted RBP8.99□□□□□ -0.97
SMARCE1-215ENST00000578995 ZBTB22O15209 634 aa8.95□□□□□ -0.98
SMARCE1-215ENST00000578995 MAMSTRQ6ZN01 415 aa8.9□□□□□ -0.98
SMARCE1-215ENST00000578995 PAK3O75914 559 aaPredicted RBP8.89□□□□□ -0.99
SMARCE1-215ENST00000578995 PELP1Q8IZL8 1130 aaKnown RBP8.85□□□□□ -0.99
SMARCE1-215ENST00000578995 FAM163AQ96GL9 167 aaPredicted RBP8.84□□□□□ -0.99
SMARCE1-215ENST00000578995 METRNQ9UJH8 293 aa8.83□□□□□ -1
SMARCE1-215ENST00000578995 C7P10643 843 aa8.82□□□□□ -1
SMARCE1-215ENST00000578995 LCE2DQ5TA82 110 aaPredicted RBP8.82□□□□□ -1
SMARCE1-215ENST00000578995 SLC39A7Q92504 469 aa8.82□□□□□ -1
SMARCE1-215ENST00000578995 PHF12Q96QT6 1004 aa8.82□□□□□ -1
SMARCE1-215ENST00000578995 CREBZFQ9NS37 354 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms