RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 VSTM4Q8IW00 320 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 LRRC8AQ8IWT6 810 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 SMAP1Q8IYB5 467 aaPredicted RBP9.87□□□□□ -0.83
VPS39-207ENST00000563692 OR6J1Q8NGC5 347 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 LRCH3Q96II8 777 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 CCDC43Q96MW1 224 aaKnown RBP9.87□□□□□ -0.83
VPS39-207ENST00000563692 ZNF830Q96NB3 372 aaPredicted RBP9.87□□□□□ -0.83
VPS39-207ENST00000563692 NAP1L5Q96NT1 182 aaPredicted RBP9.87□□□□□ -0.83
VPS39-207ENST00000563692 INPP4AQ96PE3 977 aaPredicted RBP9.87□□□□□ -0.83
VPS39-207ENST00000563692 LXNQ9BS40 222 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 PDGFCQ9NRA1 345 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 DBR1Q9UK59 544 aaKnown RBP9.87□□□□□ -0.83
VPS39-207ENST00000563692 RANBP2P49792 3224 aaKnown RBP9.87□□□□□ -0.83
VPS39-207ENST00000563692 FRMD3A2A2Y4 597 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 TRIM43BA6NCK2 446 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 SOX1O00570 391 aaPredicted RBP9.86□□□□□ -0.83
VPS39-207ENST00000563692 N4BP3O15049 544 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 ZNF500O60304 480 aaPredicted RBP9.86□□□□□ -0.83
VPS39-207ENST00000563692 FAM13AO94988 1023 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 PSAPP07602 524 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 ICAM3P32942 547 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 FPGSQ05932 587 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 FAAP100Q0VG06 881 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 RINT1Q6NUQ1 792 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 TTI2Q6NXR4 508 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 KCNV1Q6PIU1 500 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 PPP4R3CPQ6ZMV5 832 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 C1orf186Q6ZWK4 172 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 PPFIBP1Q86W92 1011 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 C4orf19Q8IY42 314 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 KIAA0895Q8NCT3 520 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 PIGOQ8TEQ8 1089 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 TRIM43Q96BQ3 446 aaPredicted RBP9.86□□□□□ -0.83
VPS39-207ENST00000563692 TIPINQ9BVW5 301 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 RTN4Q9NQC3 1192 aaKnown RBP9.86□□□□□ -0.83
VPS39-207ENST00000563692 ANKEF1Q9NU02 776 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 SEL1LQ9UBV2 794 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 ODF2LQ9ULJ1 636 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 PCDHA10Q9Y5I2 948 aa9.86□□□□□ -0.83
VPS39-207ENST00000563692 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.86□□□□□ -0.83
VPS39-207ENST00000563692 NPHP3-ACAD11A0A0J9YXS1 232 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 RBM47A0AV96 593 aaKnown RBP9.85□□□□□ -0.83
VPS39-207ENST00000563692 CALUO43852 315 aaPredicted RBP9.85□□□□□ -0.83
VPS39-207ENST00000563692 KPNA6O60684 536 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 ATP9AO75110 1047 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 GNA14O95837 355 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 TIMP1P01033 207 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 MYL3P08590 195 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 TXNP10599 105 aaKnown RBP9.85□□□□□ -0.83
VPS39-207ENST00000563692 TGFB3P10600 412 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 SFPQP23246 707 aaKnown RBP eCLIP9.85□□□□□ -0.83
VPS39-207ENST00000563692 EDNRBP24530 442 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 COPB1P53618 953 aaKnown RBP9.85□□□□□ -0.83
VPS39-207ENST00000563692 IRX5P78411 483 aaPredicted RBP9.85□□□□□ -0.83
VPS39-207ENST00000563692 FKBP3Q00688 224 aaKnown RBP9.85□□□□□ -0.83
VPS39-207ENST00000563692 RAD51AP2Q09MP3 1159 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 PPIGQ13427 754 aaKnown RBP eCLIP9.85□□□□□ -0.831e-7■■■■■ 29.8
VPS39-207ENST00000563692 ITGA7Q13683 1181 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 KRT31Q15323 416 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 MIS18BP1Q6P0N0 1132 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 SEPT14Q6ZU15 432 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 TMEM199Q8N511 208 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 DEFB123Q8N688 67 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 MYCT1Q8N699 235 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 BANK1Q8NDB2 785 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 ATP6V0A1Q93050 837 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 HPS3Q969F9 1004 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 RNPC3Q96LT9 517 aaKnown RBP9.85□□□□□ -0.83
VPS39-207ENST00000563692 REEP2Q9BRK0 252 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 SEMA6BQ9H3T3 888 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 MRPL44Q9H9J2 332 aaKnown RBP9.85□□□□□ -0.83
VPS39-207ENST00000563692 PARVGQ9HBI0 331 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 JPH1Q9HDC5 661 aaPredicted RBP9.85□□□□□ -0.83
VPS39-207ENST00000563692 SLC9A2Q9UBY0 812 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 KCNG1Q9UIX4 513 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 PCDHA2Q9Y5H9 948 aa9.85□□□□□ -0.83
VPS39-207ENST00000563692 TRIM49BA6NDI0 452 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 SUPT20HL2P0C7V6 817 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 KCNA2P16389 499 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 GUCY2CP25092 1073 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 RPL13P26373 211 aaKnown RBP9.84□□□□□ -0.83
VPS39-207ENST00000563692 YWHABP31946 246 aaKnown RBP9.84□□□□□ -0.83
VPS39-207ENST00000563692 CLCN1P35523 988 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 MTIF2P46199 727 aaKnown RBP9.84□□□□□ -0.83
VPS39-207ENST00000563692 DNM2P50570 870 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 CDK7P50613 346 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 PMS1P54277 932 aaKnown RBP9.84□□□□□ -0.83
VPS39-207ENST00000563692 CACNB1Q02641 598 aaPredicted RBP9.84□□□□□ -0.83
VPS39-207ENST00000563692 UBXN1Q04323 297 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 NEDD9Q14511 834 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 SHHQ15465 462 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 PADI6Q6TGC4 694 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 FAM126BQ8IXS8 530 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 SLC17A8Q8NDX2 589 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 CCDC112Q8NEF3 446 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 CACTINQ8WUQ7 758 aaKnown RBP9.84□□□□□ -0.83
VPS39-207ENST00000563692 CEP63Q96MT8 703 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 DUSP9Q99956 384 aaKnown RBP9.84□□□□□ -0.83
VPS39-207ENST00000563692 TUBGCP2Q9BSJ2 902 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 MTG1Q9BT17 334 aaPredicted RBP9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms