RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 AGO3Q9H9G7 860 aaKnown RBP15.13■□□□□ 0.01
SHMT2-228ENST00000557302 CDHR5Q9HBB8 845 aa15.13■□□□□ 0.01
SHMT2-228ENST00000557302 DAXXQ9UER7 740 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-228ENST00000557302 FBXO2Q9UK22 296 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-228ENST00000557302 DNM3Q9UQ16 869 aa15.13■□□□□ 0.01
SHMT2-228ENST00000557302 RBAK-RBAKDNI3L0D1 243 aa15.12■□□□□ 0.01
SHMT2-228ENST00000557302 SLC26A4O43511 780 aa15.12■□□□□ 0.01
SHMT2-228ENST00000557302 RPS6KA5O75582 802 aa15.12■□□□□ 0.01
SHMT2-228ENST00000557302 WDR5P61964 334 aaKnown RBP15.12■□□□□ 0.01
SHMT2-228ENST00000557302 GRIN1Q05586 938 aa15.12■□□□□ 0.01
SHMT2-228ENST00000557302 ODR4Q5SWX8 454 aa15.12■□□□□ 0.01
SHMT2-228ENST00000557302 PADI6Q6TGC4 694 aa15.12■□□□□ 0.01
SHMT2-228ENST00000557302 TMEM40Q8WWA1 233 aa15.12■□□□□ 0.01
SHMT2-228ENST00000557302 ZNF668Q96K58 619 aaPredicted RBP15.12■□□□□ 0.01
SHMT2-228ENST00000557302 SLC9A7Q96T83 725 aa15.12■□□□□ 0.01
SHMT2-228ENST00000557302 NT5C3AQ9H0P0 336 aa15.12■□□□□ 0.01
SHMT2-228ENST00000557302 BHMT2Q9H2M3 363 aa15.12■□□□□ 0.01
SHMT2-228ENST00000557302 XPNPEP1Q9NQW7 623 aa15.12■□□□□ 0.01
SHMT2-228ENST00000557302 TFIP11Q9UBB9 837 aaKnown RBP15.12■□□□□ 0.01
SHMT2-228ENST00000557302 PADI3Q9ULW8 664 aa15.12■□□□□ 0.01
SHMT2-228ENST00000557302 NOC2LQ9Y3T9 749 aaKnown RBP15.12■□□□□ 0.01
SHMT2-228ENST00000557302 SRPRBQ9Y5M8 271 aaKnown RBP15.12■□□□□ 0.01
SHMT2-228ENST00000557302 COL4A3BPQ9Y5P4 624 aa15.12■□□□□ 0.01
SHMT2-228ENST00000557302 E9PMD0 336 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 SOX1O00570 391 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-228ENST00000557302 SPTLC2O15270 562 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 YEATS4O95619 227 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 EYA4O95677 639 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 ATP2A2P16615 1042 aaKnown RBP15.11■□□□□ 0.01
SHMT2-228ENST00000557302 EIF4BP23588 611 aaKnown RBP15.11■□□□□ 0.01
SHMT2-228ENST00000557302 SMAD3P84022 425 aaKnown RBP15.11■□□□□ 0.01
SHMT2-228ENST00000557302 NFX1Q12986 1120 aaKnown RBP15.11■□□□□ 0.01
SHMT2-228ENST00000557302 GRB10Q13322 594 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 HYIQ5T013 277 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 ATL3Q6DD88 541 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 FAM109BQ6ICB4 259 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-228ENST00000557302 ZNF410Q86VK4 478 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 KCTD17Q8N5Z5 321 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 KRI1Q8N9T8 703 aaKnown RBP15.11■□□□□ 0.01
SHMT2-228ENST00000557302 LINC00301Q8NCQ3 95 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 MCPH1Q8NEM0 835 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 RASSF8Q8NHQ8 419 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 PHOSPHO2Q8TCD6 241 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 PRPF31Q8WWY3 499 aaKnown RBP15.11■□□□□ 0.01
SHMT2-228ENST00000557302 CALML4Q96GE6 196 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 NLRP4Q96MN2 994 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 PNMA5Q96PV4 448 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 FTHL17Q9BXU8 183 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 GCOM2Q9BZD3 368 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-228ENST00000557302 CSRNP2Q9H175 543 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 ZDHHC9Q9Y397 364 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 A0A0C4DFX4 3053 aa15.11■□□□□ 0.01
SHMT2-228ENST00000557302 A0A087WZ62 844 aa15.1■□□□□ 0.01
SHMT2-228ENST00000557302 GPR182O15218 404 aa15.1■□□□□ 0.01
SHMT2-228ENST00000557302 ASAP2O43150 1006 aa15.1■□□□□ 0.01
SHMT2-228ENST00000557302 AMHP03971 560 aa15.1■□□□□ 0.01
SHMT2-228ENST00000557302 DARSP14868 501 aaKnown RBP15.1■□□□□ 0.01
SHMT2-228ENST00000557302 CYP11B2P19099 503 aa15.1■□□□□ 0.01
SHMT2-228ENST00000557302 ANP32AP39687 249 aaKnown RBP15.1■□□□□ 0.01
SHMT2-228ENST00000557302 LAMTOR4Q0VGL1 99 aa15.1■□□□□ 0.01
SHMT2-228ENST00000557302 MXD4Q14582 209 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-228ENST00000557302 TMEM119Q4V9L6 283 aa15.1■□□□□ 0.01
SHMT2-228ENST00000557302 FAM43BQ6ZT52 329 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-228ENST00000557302 FAM228AQ86W67 206 aa15.1■□□□□ 0.01
SHMT2-228ENST00000557302 KSR1Q8IVT5 923 aa15.1■□□□□ 0.01
SHMT2-228ENST00000557302 CLIC6Q96NY7 704 aa15.1■□□□□ 0.01
SHMT2-228ENST00000557302 PLIN2Q99541 437 aa15.1■□□□□ 0.01
SHMT2-228ENST00000557302 FDXACB1Q9BRP7 624 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-228ENST00000557302 ERVK-5Q9HDB9 667 aa15.1■□□□□ 0.01
SHMT2-228ENST00000557302 CFAP45Q9UL16 551 aa15.1■□□□□ 0.01
SHMT2-228ENST00000557302 ST3GAL5Q9UNP4 418 aa15.1■□□□□ 0.01
SHMT2-228ENST00000557302 SIP14410 1827 aa15.1■□□□□ 0.01
SHMT2-228ENST00000557302 ARID2Q68CP9 1835 aa15.09■□□□□ 0.01
SHMT2-228ENST00000557302 GRXCR1A8MXD5 290 aa15.09■□□□□ 0.01
SHMT2-228ENST00000557302 PPP6R2O75170 966 aa15.09■□□□□ 0.01
SHMT2-228ENST00000557302 SRGAP2CP0DJJ0 459 aa15.09■□□□□ 0.01
SHMT2-228ENST00000557302 ARL2P36404 184 aa15.09■□□□□ 0.01
SHMT2-228ENST00000557302 TXLNAP40222 546 aa15.09■□□□□ 0.01
SHMT2-228ENST00000557302 DEFB103AP81534 67 aa15.09■□□□□ 0.01
SHMT2-228ENST00000557302 DNM1Q05193 864 aaKnown RBP15.09■□□□□ 0.01
SHMT2-228ENST00000557302 TFDP1Q14186 410 aa15.09■□□□□ 0.01
SHMT2-228ENST00000557302 KARSQ15046 597 aaKnown RBP15.09■□□□□ 0.01
SHMT2-228ENST00000557302 SPECC1Q5M775 1068 aa15.09■□□□□ 0.01
SHMT2-228ENST00000557302 FAM102BQ5T8I3 360 aa15.09■□□□□ 0.01
SHMT2-228ENST00000557302 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.09■□□□□ 0.01
SHMT2-228ENST00000557302 MAEAQ7L5Y9 396 aa15.09■□□□□ 0.01
SHMT2-228ENST00000557302 KCNK18Q7Z418 384 aa15.09■□□□□ 0.01
SHMT2-228ENST00000557302 MYOCDQ8IZQ8 938 aa15.09■□□□□ 0.01
SHMT2-228ENST00000557302 SYMPKQ92797 1274 aaKnown RBP15.09■□□□□ 0.01
SHMT2-228ENST00000557302 LRCH3Q96II8 777 aa15.09■□□□□ 0.01
SHMT2-228ENST00000557302 EPSTI1Q96J88 318 aa15.09■□□□□ 0.01
SHMT2-228ENST00000557302 INO80BQ9C086 356 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-228ENST00000557302 CCSER1Q9C0I3 900 aa15.09■□□□□ 0.01
SHMT2-228ENST00000557302 POLR3FQ9H1D9 316 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-228ENST00000557302 ATP6V1DQ9Y5K8 247 aa15.09■□□□□ 0.01
SHMT2-228ENST00000557302 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.08■□□□□ 0
SHMT2-228ENST00000557302 SFPQP23246 707 aaKnown RBP eCLIP15.08■□□□□ 0
SHMT2-228ENST00000557302 NUCB2P80303 420 aa15.08■□□□□ 0
SHMT2-228ENST00000557302 RAB30Q15771 203 aa15.08■□□□□ 0
SHMT2-228ENST00000557302 HERC6Q8IVU3 1022 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms