RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 HMGB2P26583 209 aaKnown RBP13.32□□□□□ -0.28
SHMT2-207ENST00000553837 GBP2P32456 591 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-207ENST00000553837 CARSP49589 748 aaKnown RBP13.32□□□□□ -0.28
SHMT2-207ENST00000553837 POLR2FP61218 127 aaKnown RBP13.32□□□□□ -0.28
SHMT2-207ENST00000553837 FAM153CQ494X1 144 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 CC2D2BQ6DHV5 1058 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 ARMC9Q7Z3E5 817 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 CACNA2D4Q7Z3S7 1137 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.32□□□□□ -0.28
SHMT2-207ENST00000553837 UPF1Q92900 1129 aaKnown RBP eCLIP13.32□□□□□ -0.284e-7■■■■□ 25.7
SHMT2-207ENST00000553837 CNKSR1Q969H4 720 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 RSRC1Q96IZ7 334 aaKnown RBP13.32□□□□□ -0.28
SHMT2-207ENST00000553837 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.32□□□□□ -0.28
SHMT2-207ENST00000553837 EPB41L5Q9HCM4 733 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 RBM12Q9NTZ6 932 aaKnown RBP13.32□□□□□ -0.28
SHMT2-207ENST00000553837 HAUS2Q9NVX0 235 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 CEP72Q9P209 647 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 FAM153AQ9UHL3 310 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.32□□□□□ -0.28
SHMT2-207ENST00000553837 COL4A5P29400 1685 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 ZBTB39O15060 712 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 NCK2O43639 380 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 FOSP01100 380 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-207ENST00000553837 GLI1P08151 1106 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 ACTN1P12814 892 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 CXCR5P32302 372 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 MAGEA1P43355 309 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 UBXN2AP68543 259 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 RASSF7Q02833 373 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 GUCY2DQ02846 1103 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 KCNA1Q09470 495 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 XRCC4Q13426 336 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 LRIG3Q6UXM1 1119 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 CCDC26Q8TAB7 109 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 FAM20AQ96MK3 541 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 EIF2AK1Q9BQI3 630 aaKnown RBP13.32□□□□□ -0.28
SHMT2-207ENST00000553837 OSBPL7Q9BZF2 842 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 EDEM3Q9BZQ6 932 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 PDGFDQ9GZP0 370 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-207ENST00000553837 GANQ9H2C0 597 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 BHMT2Q9H2M3 363 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 TMBIM4Q9HC24 238 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 BATF3Q9NR55 127 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 SMARCAL1Q9NZC9 954 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 DNM3Q9UQ16 869 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 ZBTB12Q9Y330 459 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-207ENST00000553837 CNTNAP1P78357 1384 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 SPDYE2BA6NHP3 402 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 PJA2O43164 708 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 MGRN1O60291 552 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 RAD17O75943 681 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 HEXIM1O94992 359 aaKnown RBP13.31□□□□□ -0.28
SHMT2-207ENST00000553837 CYP3A4P08684 503 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 SPDYE6P0CI01 402 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 NR2F2P24468 414 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 RBBP5Q15291 538 aaKnown RBP13.31□□□□□ -0.28
SHMT2-207ENST00000553837 CCDC174Q6PII3 467 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 MAATS1Q7Z4T9 603 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 SLC24A3Q9HC58 644 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 EHD2Q9NZN4 543 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 COL2A1P02458 1487 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-207ENST00000553837 SFI1A8K8P3 1242 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 GCOM1H8Y6P7 765 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-207ENST00000553837 PIK3CDO00329 1044 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 TRAPPC3O43617 180 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 MYZAPP0CAP1 466 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 SCTRP47872 440 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 GUCY2FP51841 1108 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 KCNH2Q12809 1159 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 CTTNQ14247 550 aaKnown RBP13.31□□□□□ -0.28
SHMT2-207ENST00000553837 NAA25Q14CX7 972 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 E2F5Q15329 346 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 EDRF1Q3B7T1 1238 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 CACNA2D3Q8IZS8 1091 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 MAB21L3Q8N8X9 362 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 ERMNQ8TAM6 284 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 PIGOQ8TEQ8 1089 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 HOOK2Q96ED9 719 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 SEC16BQ96JE7 1060 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 PSMB7Q99436 277 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 ATAD5Q96QE3 1844 aa13.31□□□□□ -0.28
SHMT2-207ENST00000553837 TNS1Q9HBL0 1735 aaKnown RBP13.3□□□□□ -0.28
SHMT2-207ENST00000553837 SSU72P8A0A1W2PR75 194 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 RBAK-RBAKDNI3L0D1 243 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 BUB1O43683 1085 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 DNAJC8O75937 253 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-207ENST00000553837 GNA14O95837 355 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 CFBP00751 764 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 GHRP10912 638 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 SLC9A1P19634 815 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 HPDP32754 393 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-207ENST00000553837 HSPA9P38646 679 aaKnown RBP13.3□□□□□ -0.28
SHMT2-207ENST00000553837 STAT2P52630 851 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 PDCD2Q16342 344 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-207ENST00000553837 KNOP1Q1ED39 458 aaKnown RBP13.3□□□□□ -0.28
SHMT2-207ENST00000553837 TDRD12Q587J7 1177 aaKnown RBP13.3□□□□□ -0.28
SHMT2-207ENST00000553837 SFMBT2Q5VUG0 894 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 GLIS2Q9BZE0 524 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-207ENST00000553837 KDM4CQ9H3R0 1056 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 PLCB1Q9NQ66 1216 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms