RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 GIMAP8Q8ND71 665 aaPredicted RBP5.58□□□□□ -1.52
VPS29-205ENST00000548539 UHMK1Q8TAS1 419 aaKnown RBP5.58□□□□□ -1.52
VPS29-205ENST00000548539 PUS7LQ9H0K6 701 aaKnown RBP5.58□□□□□ -1.52
VPS29-205ENST00000548539 MS4A5Q9H3V2 200 aa5.58□□□□□ -1.52
VPS29-205ENST00000548539 PCIF1Q9H4Z3 704 aa5.58□□□□□ -1.52
VPS29-205ENST00000548539 DTLQ9NZJ0 730 aa5.58□□□□□ -1.52
VPS29-205ENST00000548539 TGM5O43548 720 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 PPFIA2O75334 1257 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 CNOT4O95628 575 aaKnown RBP5.57□□□□□ -1.52
VPS29-205ENST00000548539 PTH1RQ03431 593 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 GRIN1Q05586 938 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 TMEM132BQ14DG7 1078 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 SEC23AQ15436 765 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 DDB1Q16531 1140 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 LSM12Q3MHD2 195 aaKnown RBP5.57□□□□□ -1.52
VPS29-205ENST00000548539 FIGNQ5HY92 759 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 TEPPQ6URK8 271 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 DNAJC10Q8IXB1 793 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 CLRN3Q8NCR9 226 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 SLC5A5Q92911 643 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 LMF1Q96S06 567 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 ELF4Q99607 663 aaPredicted RBP5.57□□□□□ -1.52
VPS29-205ENST00000548539 TOMM22Q9NS69 142 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 CHPF2Q9P2E5 772 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 MYOTQ9UBF9 498 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 ZFR2Q9UPR6 939 aaKnown RBP5.57□□□□□ -1.52
VPS29-205ENST00000548539 ZNF652Q9Y2D9 606 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 TELO2Q9Y4R8 837 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 ATP23Q9Y6H3 246 aa5.57□□□□□ -1.52
VPS29-205ENST00000548539 A0A087X1B8 175 aa5.56□□□□□ -1.52
VPS29-205ENST00000548539 LCHNA4D1U4 455 aa5.56□□□□□ -1.52
VPS29-205ENST00000548539 HGSO14964 777 aaPredicted RBP5.56□□□□□ -1.52
VPS29-205ENST00000548539 ULK1O75385 1050 aa5.56□□□□□ -1.52
VPS29-205ENST00000548539 INHBCP55103 352 aa5.56□□□□□ -1.52
VPS29-205ENST00000548539 TUSC3Q13454 348 aa5.56□□□□□ -1.52
VPS29-205ENST00000548539 CHRNA2Q15822 529 aa5.56□□□□□ -1.52
VPS29-205ENST00000548539 ABCB5Q2M3G0 1257 aa5.56□□□□□ -1.52
VPS29-205ENST00000548539 BROXQ5VW32 411 aa5.56□□□□□ -1.52
VPS29-205ENST00000548539 KCTD1Q719H9 257 aa5.56□□□□□ -1.52
VPS29-205ENST00000548539 RALYLQ86SE5 291 aaKnown RBP5.56□□□□□ -1.52
VPS29-205ENST00000548539 FMNL3Q8IVF7 1028 aa5.56□□□□□ -1.52
VPS29-205ENST00000548539 EFHBQ8N7U6 833 aa5.56□□□□□ -1.52
VPS29-205ENST00000548539 ARRDC4Q8NCT1 418 aa5.56□□□□□ -1.52
VPS29-205ENST00000548539 EXTL1Q92935 676 aa5.56□□□□□ -1.52
VPS29-205ENST00000548539 LRRC37BQ96QE4 947 aa5.56□□□□□ -1.52
VPS29-205ENST00000548539 RIC8BQ9NVN3 520 aa5.56□□□□□ -1.52
VPS29-205ENST00000548539 PCDHB4Q9Y5E5 795 aa5.56□□□□□ -1.52
VPS29-205ENST00000548539 EID1Q9Y6B2 187 aa5.56□□□□□ -1.52
VPS29-205ENST00000548539 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.55□□□□□ -1.52
VPS29-205ENST00000548539 PRAMEF25A6NGN4 478 aa5.55□□□□□ -1.52
VPS29-205ENST00000548539 FAM90A27PA6NNH2 459 aa5.55□□□□□ -1.52
VPS29-205ENST00000548539 GABRDO14764 452 aa5.55□□□□□ -1.52
VPS29-205ENST00000548539 MAFKO60675 156 aa5.55□□□□□ -1.52
VPS29-205ENST00000548539 TADA3O75528 432 aa5.55□□□□□ -1.52
VPS29-205ENST00000548539 MT-CO1P00395 513 aa5.55□□□□□ -1.52
VPS29-205ENST00000548539 PTX3P26022 381 aaPredicted RBP5.55□□□□□ -1.52
VPS29-205ENST00000548539 IARSP41252 1262 aaKnown RBP5.55□□□□□ -1.52
VPS29-205ENST00000548539 EMC4Q5J8M3 183 aa5.55□□□□□ -1.52
VPS29-205ENST00000548539 SYDE2Q5VT97 1194 aa5.55□□□□□ -1.52
VPS29-205ENST00000548539 BTBD8Q5XKL5 378 aa5.55□□□□□ -1.52
VPS29-205ENST00000548539 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.55□□□□□ -1.52
VPS29-205ENST00000548539 PASD1Q8IV76 773 aa5.55□□□□□ -1.52
VPS29-205ENST00000548539 NLGN4XQ8N0W4 816 aa5.55□□□□□ -1.52
VPS29-205ENST00000548539 CLEC4DQ8WXI8 215 aa5.55□□□□□ -1.52
VPS29-205ENST00000548539 EDAQ92838 391 aa5.55□□□□□ -1.52
VPS29-205ENST00000548539 AHCYL2Q96HN2 611 aaKnown RBP5.55□□□□□ -1.52
VPS29-205ENST00000548539 SMOC1Q9H4F8 434 aa5.55□□□□□ -1.52
VPS29-205ENST00000548539 C14orf119Q9NWQ9 140 aa5.55□□□□□ -1.52
VPS29-205ENST00000548539 ASH2LQ9UBL3 628 aa5.55□□□□□ -1.52
VPS29-205ENST00000548539 SPO11Q9Y5K1 396 aa5.55□□□□□ -1.52
VPS29-205ENST00000548539 CLASP2O75122 1294 aaKnown RBP5.54□□□□□ -1.52
VPS29-205ENST00000548539 MYBL2P10244 700 aa5.54□□□□□ -1.52
VPS29-205ENST00000548539 PTPN1P18031 435 aaKnown RBP5.54□□□□□ -1.52
VPS29-205ENST00000548539 COMTP21964 271 aa5.54□□□□□ -1.52
VPS29-205ENST00000548539 NEK2P51955 445 aa5.54□□□□□ -1.52
VPS29-205ENST00000548539 SESN3P58005 492 aa5.54□□□□□ -1.52
VPS29-205ENST00000548539 MCL1Q07820 350 aa5.54□□□□□ -1.52
VPS29-205ENST00000548539 TERF2Q15554 542 aa5.54□□□□□ -1.52
VPS29-205ENST00000548539 TMC5Q6UXY8 1006 aa5.54□□□□□ -1.52
VPS29-205ENST00000548539 NOL8Q76FK4 1167 aaKnown RBP5.54□□□□□ -1.52
VPS29-205ENST00000548539 CMIPQ8IY22 773 aa5.54□□□□□ -1.52
VPS29-205ENST00000548539 NUDT10Q8NFP7 164 aa5.54□□□□□ -1.52
VPS29-205ENST00000548539 NEU4Q8WWR8 484 aaPredicted RBP5.54□□□□□ -1.52
VPS29-205ENST00000548539 NUDT11Q96G61 164 aa5.54□□□□□ -1.52
VPS29-205ENST00000548539 AASDHPPTQ9NRN7 309 aa5.54□□□□□ -1.52
VPS29-205ENST00000548539 TCEAL9Q9UHQ7 104 aa5.54□□□□□ -1.52
VPS29-205ENST00000548539 TNFRSF18Q9Y5U5 241 aa5.54□□□□□ -1.52
VPS29-205ENST00000548539 B3GALT1Q9Y5Z6 326 aa5.54□□□□□ -1.52
VPS29-205ENST00000548539 SLC4A7Q9Y6M7 1214 aa5.54□□□□□ -1.52
VPS29-205ENST00000548539 TNKSO95271 1327 aa5.53□□□□□ -1.52
VPS29-205ENST00000548539 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.53□□□□□ -1.52
VPS29-205ENST00000548539 TCRBV5S2A0A599 114 aa5.53□□□□□ -1.52
VPS29-205ENST00000548539 LRG1P02750 347 aa5.53□□□□□ -1.52
VPS29-205ENST00000548539 SCAND1P57086 179 aa5.53□□□□□ -1.52
VPS29-205ENST00000548539 ERVK-21P61565 698 aa5.53□□□□□ -1.52
VPS29-205ENST00000548539 SMAD3P84022 425 aaKnown RBP5.53□□□□□ -1.52
VPS29-205ENST00000548539 DGCR2P98153 550 aa5.53□□□□□ -1.52
VPS29-205ENST00000548539 LRRC41Q15345 812 aa5.53□□□□□ -1.52
VPS29-205ENST00000548539 SMAD2Q15796 467 aaKnown RBP5.53□□□□□ -1.52
VPS29-205ENST00000548539 PTPN21Q16825 1174 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms