RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 PCNX4Q63HM2 1172 aa17.69■□□□□ 0.42
CLSTN3-216ENST00000545663 ZNF589Q86UQ0 364 aaPredicted RBP17.69■□□□□ 0.42
CLSTN3-216ENST00000545663 NLRX1Q86UT6 975 aa17.69■□□□□ 0.42
CLSTN3-216ENST00000545663 TMEM169Q96HH4 297 aa17.69■□□□□ 0.42
CLSTN3-216ENST00000545663 EPS15L1Q9UBC2 864 aa17.69■□□□□ 0.42
CLSTN3-216ENST00000545663 MAD2L2Q9UI95 211 aa17.69■□□□□ 0.42
CLSTN3-216ENST00000545663 IRAK3Q9Y616 596 aa17.69■□□□□ 0.42
CLSTN3-216ENST00000545663 CNOT1A5YKK6 2376 aaKnown RBP17.69■□□□□ 0.42
CLSTN3-216ENST00000545663 LILRB5O75023 590 aa17.68■□□□□ 0.42
CLSTN3-216ENST00000545663 CTSAP10619 480 aa17.68■□□□□ 0.42
CLSTN3-216ENST00000545663 ITGB5P18084 799 aa17.68■□□□□ 0.42
CLSTN3-216ENST00000545663 ALDH7A1P49419 539 aaKnown RBP17.68■□□□□ 0.42
CLSTN3-216ENST00000545663 STARD6P59095 220 aa17.68■□□□□ 0.42
CLSTN3-216ENST00000545663 BMS1Q14692 1282 aaKnown RBP17.68■□□□□ 0.42
CLSTN3-216ENST00000545663 USP17L6PQ6QN14 398 aa17.68■□□□□ 0.42
CLSTN3-216ENST00000545663 HELQQ8TDG4 1101 aa17.68■□□□□ 0.42
CLSTN3-216ENST00000545663 OSMRQ99650 979 aa17.68■□□□□ 0.42
CLSTN3-216ENST00000545663 VN1R3Q9BXE9 311 aa17.68■□□□□ 0.42
CLSTN3-216ENST00000545663 HELLSQ9NRZ9 838 aa17.68■□□□□ 0.42
CLSTN3-216ENST00000545663 ZSCAN32Q9NX65 697 aa17.68■□□□□ 0.42
CLSTN3-216ENST00000545663 TTC41PQ6P2S7 1318 aa17.68■□□□□ 0.42
CLSTN3-216ENST00000545663 FLNBO75369 2602 aaKnown RBP17.68■□□□□ 0.42
CLSTN3-216ENST00000545663 WDFY3Q8IZQ1 3526 aa17.67■□□□□ 0.42
CLSTN3-216ENST00000545663 HOXA2O43364 376 aa17.67■□□□□ 0.42
CLSTN3-216ENST00000545663 PCP11498 1178 aaKnown RBP17.67■□□□□ 0.42
CLSTN3-216ENST00000545663 PMLP29590 882 aa17.67■□□□□ 0.42
CLSTN3-216ENST00000545663 CLCN4P51793 760 aa17.67■□□□□ 0.42
CLSTN3-216ENST00000545663 N4BP2L1Q5TBK1 243 aaPredicted RBP17.67■□□□□ 0.42
CLSTN3-216ENST00000545663 IQCA1Q86XH1 822 aa17.67■□□□□ 0.42
CLSTN3-216ENST00000545663 ECHDC2Q86YB7 292 aa17.67■□□□□ 0.42
CLSTN3-216ENST00000545663 NETO1Q8TDF5 533 aa17.67■□□□□ 0.42
CLSTN3-216ENST00000545663 RPP25Q9BUL9 199 aaKnown RBP17.67■□□□□ 0.42
CLSTN3-216ENST00000545663 DCTPP1Q9H773 170 aa17.67■□□□□ 0.42
CLSTN3-216ENST00000545663 B4E1Z4 1266 aa17.66■□□□□ 0.42
CLSTN3-216ENST00000545663 GDF9O60383 454 aa17.66■□□□□ 0.42
CLSTN3-216ENST00000545663 KLRC2P26717 231 aa17.66■□□□□ 0.42
CLSTN3-216ENST00000545663 SNW1Q13573 536 aaKnown RBP17.66■□□□□ 0.42
CLSTN3-216ENST00000545663 C15orf39Q6ZRI6 1047 aa17.66■□□□□ 0.42
CLSTN3-216ENST00000545663 PIBF1Q8WXW3 757 aa17.66■□□□□ 0.42
CLSTN3-216ENST00000545663 NELL1Q92832 810 aa17.66■□□□□ 0.42
CLSTN3-216ENST00000545663 BORCS6Q96GS4 357 aa17.66■□□□□ 0.42
CLSTN3-216ENST00000545663 KLHL5Q96PQ7 755 aa17.66■□□□□ 0.42
CLSTN3-216ENST00000545663 BCO2Q9BYV7 579 aa17.66■□□□□ 0.42
CLSTN3-216ENST00000545663 RNF41Q9H4P4 317 aaPredicted RBP17.66■□□□□ 0.42
CLSTN3-216ENST00000545663 WDR6Q9NNW5 1121 aaKnown RBP17.66■□□□□ 0.42
CLSTN3-216ENST00000545663 ZSWIM5Q9P217 1185 aa17.66■□□□□ 0.42
CLSTN3-216ENST00000545663 IGF2RP11717 2491 aa17.66■□□□□ 0.42
CLSTN3-216ENST00000545663 CCDC195A0A1B0GUA6 201 aa17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 PALM3A6NDB9 673 aaPredicted RBP17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 CYTH3O43739 400 aa17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 TBC1D4O60343 1298 aa17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 SSBP05455 408 aaKnown RBP eCLIP17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 PROS1P07225 676 aa17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 CNPP09543 421 aaKnown RBP17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 CD72P21854 359 aa17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 GPC5P78333 572 aa17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 MCMDC2Q4G0Z9 681 aa17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 CCDC178Q5BJE1 867 aa17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 DDX53Q86TM3 631 aaKnown RBP17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 PPFIBP1Q86W92 1011 aa17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 BBXQ8WY36 941 aaPredicted RBP17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 GPRASP2Q96D09 838 aa17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 AZI2Q9H6S1 392 aa17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 SLC2A4RGQ9NR83 387 aa17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 GMEB2Q9UKD1 530 aa17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 ZMYM6O95789 1325 aa17.65■□□□□ 0.42
CLSTN3-216ENST00000545663 BAZ2BQ9UIF8 2168 aaKnown RBP17.64■□□□□ 0.42
CLSTN3-216ENST00000545663 KANSL1LA0AUZ9 987 aa17.64■□□□□ 0.41
CLSTN3-216ENST00000545663 ZC3H11AO75152 810 aaKnown RBP eCLIP17.64■□□□□ 0.41
CLSTN3-216ENST00000545663 CRYBB1P53674 252 aaPredicted RBP17.64■□□□□ 0.41
CLSTN3-216ENST00000545663 POLGP54098 1239 aaPredicted RBP17.64■□□□□ 0.41
CLSTN3-216ENST00000545663 HTR4Q13639 388 aa17.64■□□□□ 0.41
CLSTN3-216ENST00000545663 GIT2Q14161 759 aa17.64■□□□□ 0.41
CLSTN3-216ENST00000545663 UBXN2BQ14CS0 331 aa17.64■□□□□ 0.41
CLSTN3-216ENST00000545663 ODR4Q5SWX8 454 aa17.64■□□□□ 0.41
CLSTN3-216ENST00000545663 NXPE3Q969Y0 559 aa17.64■□□□□ 0.41
CLSTN3-216ENST00000545663 IGSF21Q96ID5 467 aa17.64■□□□□ 0.41
CLSTN3-216ENST00000545663 RIOX1Q9H6W3 641 aa17.64■□□□□ 0.41
CLSTN3-216ENST00000545663 ZMIZ1Q9ULJ6 1067 aa17.64■□□□□ 0.41
CLSTN3-216ENST00000545663 NUMBLQ9Y6R0 609 aa17.64■□□□□ 0.41
CLSTN3-216ENST00000545663 CLUHO75153 1309 aa17.64■□□□□ 0.41
CLSTN3-216ENST00000545663 LAMA4Q16363 1823 aa17.63■□□□□ 0.41
CLSTN3-216ENST00000545663 PNMA6FA0A0J9YX94 578 aa17.63■□□□□ 0.41
CLSTN3-216ENST00000545663 FAM170BA6NMN3 283 aa17.63■□□□□ 0.41
CLSTN3-216ENST00000545663 ANHXE9PGG2 379 aa17.63■□□□□ 0.41
CLSTN3-216ENST00000545663 GPR32O75388 356 aa17.63■□□□□ 0.41
CLSTN3-216ENST00000545663 RFPL2O75678 378 aa17.63■□□□□ 0.41
CLSTN3-216ENST00000545663 VTNP04004 478 aa17.63■□□□□ 0.41
CLSTN3-216ENST00000545663 LAMP2P13473 410 aa17.63■□□□□ 0.41
CLSTN3-216ENST00000545663 STAT5BP51692 787 aa17.63■□□□□ 0.41
CLSTN3-216ENST00000545663 FAM43BQ6ZT52 329 aaPredicted RBP17.63■□□□□ 0.41
CLSTN3-216ENST00000545663 SMARCC2Q8TAQ2 1214 aa17.63■□□□□ 0.41
CLSTN3-216ENST00000545663 JPH1Q9HDC5 661 aaPredicted RBP17.63■□□□□ 0.41
CLSTN3-216ENST00000545663 ITPR1Q14643 2758 aa17.63■□□□□ 0.41
CLSTN3-216ENST00000545663 C1QTNF9BB2RNN3 333 aa17.62■□□□□ 0.41
CLSTN3-216ENST00000545663 MEIS2O14770 477 aa17.62■□□□□ 0.41
CLSTN3-216ENST00000545663 ZNF213O14771 459 aa17.62■□□□□ 0.41
CLSTN3-216ENST00000545663 C1QTNF9P0C862 333 aa17.62■□□□□ 0.41
CLSTN3-216ENST00000545663 MS4A1P11836 297 aa17.62■□□□□ 0.41
CLSTN3-216ENST00000545663 SHC2P98077 582 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms