RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 C21orf62-AS1Q17RA5 79 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 QRICH1Q2TAL8 776 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 USH1GQ495M9 461 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 CPLX2Q6PUV4 134 aaKnown RBP5.83□□□□□ -1.48
CLIP1-217ENST00000543205 CTU1Q7Z7A3 348 aaKnown RBP5.83□□□□□ -1.48
CLIP1-217ENST00000543205 NBPF11Q86T75 865 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 FBXO11Q86XK2 927 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 GPR161Q8N6U8 529 aaKnown RBP5.83□□□□□ -1.48
CLIP1-217ENST00000543205 CHST13Q8NET6 341 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 MMP19Q99542 508 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 AMNQ9BXJ7 453 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 ACAD9Q9H845 621 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 PPCSQ9HAB8 311 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 RNF146Q9NTX7 359 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 LIMCH1Q9UPQ0 1083 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 RIPK3Q9Y572 518 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 TNRC18O15417 2968 aaPredicted RBP5.83□□□□□ -1.48
CLIP1-217ENST00000543205 ZNF536O15090 1300 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 SLC15A5A6NIM6 579 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 CYTH3O43739 400 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 PFKFB2O60825 505 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 CDKL5O76039 1030 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 RPLP1P05386 114 aaKnown RBP5.82□□□□□ -1.48
CLIP1-217ENST00000543205 MYL1P05976 194 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 PRMT2P55345 433 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 SOX10P56693 466 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 MCL1Q07820 350 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 KANK3Q6NY19 840 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 RINLQ6ZS11 566 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 OTOP1Q7RTM1 612 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 DDX42Q86XP3 938 aaKnown RBP eCLIP5.82□□□□□ -1.48
CLIP1-217ENST00000543205 ANKRD35Q8N283 1001 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 RAET1EQ8TD07 263 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 SOCS4Q8WXH5 440 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 MTMR8Q96EF0 704 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 ZSCAN31Q96LW9 406 aaPredicted RBP5.82□□□□□ -1.48
CLIP1-217ENST00000543205 OSBPL7Q9BZF2 842 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 NCOA5Q9HCD5 579 aaKnown RBP5.82□□□□□ -1.48
CLIP1-217ENST00000543205 JADE2Q9NQC1 790 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 KBTBD4Q9NVX7 518 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 SLC5A4Q9NY91 659 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 SRRDQ9UH36 339 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 FNDC3AQ9Y2H6 1198 aaKnown RBP5.82□□□□□ -1.48
CLIP1-217ENST00000543205 MRPL11Q9Y3B7 192 aaKnown RBP5.82□□□□□ -1.48
CLIP1-217ENST00000543205 MSRB2Q9Y3D2 182 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 PCDHA1Q9Y5I3 950 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 KCNMB2Q9Y691 235 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 SCINQ9Y6U3 715 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 ABCB11O95342 1321 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 NID2Q14112 1375 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 hCG_1642624A0A1W2PR95 340 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 MX2P20592 715 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 EIF4BP23588 611 aaKnown RBP5.82□□□□□ -1.48
CLIP1-217ENST00000543205 ADORA2AP29274 412 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 CNGA1P29973 690 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 RGS2P41220 211 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 MCM2P49736 904 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 PRKCZQ05513 592 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 SSRP1Q08945 709 aaKnown RBP5.82□□□□□ -1.48
CLIP1-217ENST00000543205 SCRN1Q12765 414 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 GRIN2CQ14957 1233 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 TRIP4Q15650 581 aaPredicted RBP5.82□□□□□ -1.48
CLIP1-217ENST00000543205 PKN2Q16513 984 aaKnown RBP5.82□□□□□ -1.48
CLIP1-217ENST00000543205 ME3Q16798 604 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 SLC35G1Q2M3R5 365 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 NSMFQ6X4W1 530 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 DPP9Q86TI2 863 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 ABRAQ8N0Z2 381 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 GJD3Q8N144 294 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 DDX11Q96FC9 970 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 SLC26A6Q9BXS9 759 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 TMX1Q9H3N1 280 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 HCN2Q9UL51 889 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 PTPN22Q9Y2R2 807 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 RLFQ13129 1914 aa5.82□□□□□ -1.48
CLIP1-217ENST00000543205 PTPDC1A2A3K4 754 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 A6NHS1 94 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 PRPF3O43395 683 aaKnown RBP5.81□□□□□ -1.48
CLIP1-217ENST00000543205 PPP1R11O60927 126 aaPredicted RBP5.81□□□□□ -1.48
CLIP1-217ENST00000543205 XYLBO75191 536 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 BMP4P12644 408 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 IFNAR1P17181 557 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 TAL1P17542 331 aaPredicted RBP5.81□□□□□ -1.48
CLIP1-217ENST00000543205 CYP2B6P20813 491 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 FLT3LGP49771 235 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 RAB27AP51159 221 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 EPHB1P54762 984 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 CTBSQ01459 385 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 CAP1Q01518 475 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 SPEM2Q0P670 501 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 GAS6Q14393 721 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 GRB14Q14449 540 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 ZRSR2Q15696 482 aaKnown RBP5.81□□□□□ -1.48
CLIP1-217ENST00000543205 MUM1L1Q5H9M0 696 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 KRT25Q7Z3Z0 450 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 HEATR3Q7Z4Q2 680 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 RAB44Q7Z6P3 723 aaPredicted RBP5.81□□□□□ -1.48
CLIP1-217ENST00000543205 NECAB1Q8N987 351 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 C1orf131Q8NDD1 294 aaKnown RBP5.81□□□□□ -1.48
CLIP1-217ENST00000543205 PHKBQ93100 1093 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms