RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 USP34Q70CQ2 3546 aa9.95□□□□□ -0.82
USP4-213ENST00000488520 ZBTB5O15062 677 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 PPP1R11O60927 126 aaPredicted RBP9.94□□□□□ -0.82
USP4-213ENST00000488520 PLEKHA8P1O95397 391 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 LGALS2P05162 132 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 HOXD8P13378 290 aaPredicted RBP9.94□□□□□ -0.82
USP4-213ENST00000488520 CDC27P30260 824 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 GTF2F1P35269 517 aaKnown RBP eCLIP9.94□□□□□ -0.82
USP4-213ENST00000488520 IRS1P35568 1242 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 LTBRP36941 435 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 DLX2Q07687 328 aaPredicted RBP9.94□□□□□ -0.82
USP4-213ENST00000488520 ME3Q16798 604 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 KCNV1Q6PIU1 500 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 HFE2Q6ZVN8 426 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 TMTC3Q6ZXV5 915 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 VSIG10LQ86VR7 867 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 FIBCD1Q8N539 461 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 NECAB1Q8N987 351 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 FAM184AQ8NB25 1140 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 CCDC12Q8WUD4 166 aaPredicted RBP9.94□□□□□ -0.82
USP4-213ENST00000488520 ZNF775Q96BV0 537 aaPredicted RBP9.94□□□□□ -0.82
USP4-213ENST00000488520 PIGSQ96S52 555 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 KCTD15Q96SI1 283 aaPredicted RBP9.94□□□□□ -0.82
USP4-213ENST00000488520 SLC26A6Q9BXS9 759 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 MAF1Q9H063 256 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 ZFAND3Q9H8U3 227 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 NCOA5Q9HCD5 579 aaKnown RBP9.94□□□□□ -0.82
USP4-213ENST00000488520 SETD4Q9NVD3 440 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 MUTYHQ9UIF7 546 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 FAM50BQ9Y247 325 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 PCDHA1Q9Y5I3 950 aa9.94□□□□□ -0.82
USP4-213ENST00000488520 NOP56O00567 594 aaKnown RBP9.93□□□□□ -0.82
USP4-213ENST00000488520 GRM6O15303 877 aa9.93□□□□□ -0.82
USP4-213ENST00000488520 PRPF3O43395 683 aaKnown RBP9.93□□□□□ -0.82
USP4-213ENST00000488520 IFNAR1P17181 557 aa9.93□□□□□ -0.82
USP4-213ENST00000488520 CCND2P30279 289 aa9.93□□□□□ -0.82
USP4-213ENST00000488520 SP4Q02446 784 aa9.93□□□□□ -0.82
USP4-213ENST00000488520 SCRN1Q12765 414 aa9.93□□□□□ -0.82
USP4-213ENST00000488520 TRIM29Q14134 588 aa9.93□□□□□ -0.82
USP4-213ENST00000488520 UTP14CQ5TAP6 766 aaKnown RBP9.93□□□□□ -0.82
USP4-213ENST00000488520 TRIM50Q86XT4 487 aa9.93□□□□□ -0.82
USP4-213ENST00000488520 CCDC83Q8IWF9 413 aa9.93□□□□□ -0.82
USP4-213ENST00000488520 ADHFE1Q8IWW8 467 aa9.93□□□□□ -0.82
USP4-213ENST00000488520 CUL5Q93034 780 aa9.93□□□□□ -0.82
USP4-213ENST00000488520 TMX3Q96JJ7 454 aa9.93□□□□□ -0.82
USP4-213ENST00000488520 LLPHQ9BRT6 129 aaKnown RBP9.93□□□□□ -0.82
USP4-213ENST00000488520 PRKAG3Q9UGI9 489 aa9.93□□□□□ -0.82
USP4-213ENST00000488520 TELO2Q9Y4R8 837 aa9.93□□□□□ -0.82
USP4-213ENST00000488520 ZDBF2Q9HCK1 2354 aa9.93□□□□□ -0.82
USP4-213ENST00000488520 PLXNA3P51805 1871 aa9.92□□□□□ -0.82
USP4-213ENST00000488520 hCG_1984214I3L0E3 225 aa9.92□□□□□ -0.82
USP4-213ENST00000488520 K7ELQ4 463 aaPredicted RBP9.92□□□□□ -0.82
USP4-213ENST00000488520 LINC01565O15544 149 aa9.92□□□□□ -0.82
USP4-213ENST00000488520 MBTPS2O43462 519 aa9.92□□□□□ -0.82
USP4-213ENST00000488520 DEXIO95424 95 aa9.92□□□□□ -0.82
USP4-213ENST00000488520 SNRPBP14678 240 aaKnown RBP9.92□□□□□ -0.82
USP4-213ENST00000488520 ANP32AP39687 249 aaKnown RBP9.92□□□□□ -0.82
USP4-213ENST00000488520 HMGN5P82970 282 aaKnown RBP9.92□□□□□ -0.82
USP4-213ENST00000488520 ARHGAP4P98171 946 aa9.92□□□□□ -0.82
USP4-213ENST00000488520 HYAL1Q12794 435 aa9.92□□□□□ -0.82
USP4-213ENST00000488520 MRPL14Q6P1L8 145 aaKnown RBP9.92□□□□□ -0.82
USP4-213ENST00000488520 CYFIP1Q7L576 1253 aa9.92□□□□□ -0.82
USP4-213ENST00000488520 HEATR3Q7Z4Q2 680 aa9.92□□□□□ -0.82
USP4-213ENST00000488520 RNF135Q8IUD6 432 aa9.92□□□□□ -0.82
USP4-213ENST00000488520 ZNF713Q8N859 430 aaPredicted RBP9.92□□□□□ -0.82
USP4-213ENST00000488520 PHKBQ93100 1093 aa9.92□□□□□ -0.82
USP4-213ENST00000488520 GTF3C6Q969F1 213 aa9.92□□□□□ -0.82
USP4-213ENST00000488520 SNX21Q969T3 373 aa9.92□□□□□ -0.82
USP4-213ENST00000488520 RNF26Q9BY78 433 aaPredicted RBP9.92□□□□□ -0.82
USP4-213ENST00000488520 GLT8D2Q9H1C3 349 aa9.92□□□□□ -0.82
USP4-213ENST00000488520 RTEL1Q9NZ71 1219 aa9.92□□□□□ -0.82
USP4-213ENST00000488520 SMC3Q9UQE7 1217 aa9.92□□□□□ -0.82
USP4-213ENST00000488520 hCG_1642624A0A1W2PR95 340 aa9.91□□□□□ -0.82
USP4-213ENST00000488520 GCOM1H8Y6P7 765 aaPredicted RBP9.91□□□□□ -0.82
USP4-213ENST00000488520 TBX10O75333 385 aa9.91□□□□□ -0.82
USP4-213ENST00000488520 POLR2MP0CAP2 368 aa9.91□□□□□ -0.82
USP4-213ENST00000488520 TGFB3P10600 412 aa9.91□□□□□ -0.82
USP4-213ENST00000488520 GHRP10912 638 aa9.91□□□□□ -0.82
USP4-213ENST00000488520 GNAT1P11488 350 aa9.91□□□□□ -0.82
USP4-213ENST00000488520 HOXC8P31273 242 aa9.91□□□□□ -0.82
USP4-213ENST00000488520 BMPR1AP36894 532 aa9.91□□□□□ -0.82
USP4-213ENST00000488520 NAPAP54920 295 aa9.91□□□□□ -0.82
USP4-213ENST00000488520 NLRP5P59047 1200 aa9.91□□□□□ -0.82
USP4-213ENST00000488520 MRPS9P82933 396 aaKnown RBP9.91□□□□□ -0.82
USP4-213ENST00000488520 COL19A1Q14993 1142 aa9.91□□□□□ -0.82
USP4-213ENST00000488520 SMAD2Q15796 467 aaKnown RBP9.91□□□□□ -0.82
USP4-213ENST00000488520 GPR20Q99678 358 aa9.91□□□□□ -0.82
USP4-213ENST00000488520 C6orf50Q9HD87 102 aa9.91□□□□□ -0.82
USP4-213ENST00000488520 ALG13Q9NP73 1137 aaKnown RBP9.91□□□□□ -0.82
USP4-213ENST00000488520 MAP3K20Q9NYL2 800 aaKnown RBP9.91□□□□□ -0.82
USP4-213ENST00000488520 ORC3Q9UBD5 711 aaPredicted RBP9.91□□□□□ -0.82
USP4-213ENST00000488520 CFAP54Q96N23 3096 aa9.91□□□□□ -0.82
USP4-213ENST00000488520 ADGRA3Q8IWK6 1321 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 SMCO2A6NFE2 343 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 STXBP3O00186 592 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 CYTH3O43739 400 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 PPFIA3O75145 1194 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 CHRNA1P02708 482 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 RB1P06400 928 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 LINC00271P0C7V0 271 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms