RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 MRFAP1L1Q96HT8 127 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 PNMA5Q96PV4 448 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 HSD17B14Q9BPX1 270 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 KATNAL1Q9BW62 490 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 COL25A1Q9BXS0 654 aaPredicted RBP13.1□□□□□ -0.31
USP54-209ENST00000464635 MLXIPQ9HAP2 919 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 PRDM6Q9NQX0 595 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 BMP2KQ9NSY1 1161 aaPredicted RBP13.1□□□□□ -0.31
USP54-209ENST00000464635 BLOC1S4Q9NUP1 217 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 KCND2Q9NZV8 630 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 VAV3Q9UKW4 847 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 PCDHA11Q9Y5I1 949 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 TRANK1O15050 2925 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 KLRC4O43908 158 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 NBNO60934 754 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 PRR29P0C7W0 189 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 TGFB3P10600 412 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 ACTN1P12814 892 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 SELPP16109 830 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 CDC25AP30304 524 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 ICAM3P32942 547 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 AFMP43652 599 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 SP4Q02446 784 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 MBTPS1Q14703 1052 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 EPHA7Q15375 998 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 GNPTABQ3T906 1256 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 PPP2R2DQ66LE6 453 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 UNC13DQ70J99 1090 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 CYFIP1Q7L576 1253 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 TMCO2Q7Z6W1 182 aaPredicted RBP13.09□□□□□ -0.31
USP54-209ENST00000464635 GIMAP8Q8ND71 665 aaPredicted RBP13.09□□□□□ -0.31
USP54-209ENST00000464635 SLC28A3Q9HAS3 691 aa13.09□□□□□ -0.31
USP54-209ENST00000464635 POTEMA6NI47 508 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 PP2D1A8MPX8 630 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 PPFIA4O75335 1185 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 LYPLA2O95372 231 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 ADCY5O95622 1261 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 CA3P07451 260 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 CCT6AP40227 531 aaKnown RBP13.08□□□□□ -0.32
USP54-209ENST00000464635 PTK7Q13308 1070 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 STIM1Q13586 685 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 CUL4BQ13620 913 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 ZNF618Q5T7W0 954 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 METTL7BQ6UX53 244 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 SPRED2Q7Z698 418 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 NLRX1Q86UT6 975 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 PPM1EQ8WY54 764 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 DHTKD1Q96HY7 919 aaPredicted RBP13.08□□□□□ -0.32
USP54-209ENST00000464635 SLC9A7Q96T83 725 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 GAS2L1Q99501 681 aaPredicted RBP13.08□□□□□ -0.32
USP54-209ENST00000464635 GPR20Q99678 358 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 SENP7Q9BQF6 1050 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 TEKT3Q9BXF9 490 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 RWDD2AQ9UIY3 292 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 DNM3Q9UQ16 869 aa13.08□□□□□ -0.32
USP54-209ENST00000464635 GOLGA6L6A8MZA4 724 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 PPP1R3GB7ZBB8 358 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 H3BRB1 525 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 IPO5O00410 1097 aaKnown RBP13.07□□□□□ -0.32
USP54-209ENST00000464635 BIN1O00499 593 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 NOP56O00567 594 aaKnown RBP13.07□□□□□ -0.32
USP54-209ENST00000464635 SPATA31C1P0DKV0 1188 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 SMIM10L2AP0DMW4 78 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 SMIM10L2BP0DMW5 78 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 PRKCSHP14314 528 aaPredicted RBP13.07□□□□□ -0.32
USP54-209ENST00000464635 ITGB5P18084 799 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 HOXC8P31273 242 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 SFNP31947 248 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 WDR5P61964 334 aaKnown RBP13.07□□□□□ -0.32
USP54-209ENST00000464635 DEFB103AP81534 67 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 EHHADHQ08426 723 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 NEDD9Q14511 834 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 LRCH2Q5VUJ6 765 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 SPATA1Q5VX52 437 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 CATSPER3Q86XQ3 398 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 HERC6Q8IVU3 1022 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 SYT2Q8N9I0 419 aaPredicted RBP13.07□□□□□ -0.32
USP54-209ENST00000464635 ERCC4Q92889 916 aaPredicted RBP13.07□□□□□ -0.32
USP54-209ENST00000464635 ZNF577Q9BSK1 485 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 OSBPL7Q9BZF2 842 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 TUT1Q9H6E5 874 aaKnown RBP13.07□□□□□ -0.32
USP54-209ENST00000464635 CERS4Q9HA82 394 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 KCNH7Q9NS40 1196 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 NFASCO94856 1347 aa13.07□□□□□ -0.32
USP54-209ENST00000464635 FRMD3A2A2Y4 597 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 EPOPA6NHQ4 379 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 LRRC10BA6NIK2 292 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 RFXAPO00287 272 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 DHX15O43143 795 aaKnown RBP13.06□□□□□ -0.32
USP54-209ENST00000464635 TREHO43280 583 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 CBFA2T2O43439 604 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 GAS7O60861 476 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 ATP9AO75110 1047 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 BAIAP3O94812 1187 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 KIF20AO95235 890 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 CXCL10P02778 98 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 KCNA2P16389 499 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 ZNF18P17022 549 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 IGFBP4P22692 258 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 CCDC85BQ15834 202 aaPredicted RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms