RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 TMEM40Q8WWA1 233 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 SEPT8Q92599 483 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 CDK5RAP3Q96JB5 506 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 SCLT1Q96NL6 688 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 CLIC6Q96NY7 704 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 PLIN2Q99541 437 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 IFIH1Q9BYX4 1025 aaKnown RBP13.9□□□□□ -0.18
SKA1-203ENST00000417656 MTIF3Q9H2K0 278 aaKnown RBP13.9□□□□□ -0.18
SKA1-203ENST00000417656 BHMT2Q9H2M3 363 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 AGO3Q9H9G7 860 aaKnown RBP13.9□□□□□ -0.18
SKA1-203ENST00000417656 CDHR5Q9HBB8 845 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 SUCLA2Q9P2R7 463 aaPredicted RBP13.9□□□□□ -0.18
SKA1-203ENST00000417656 SRPRBQ9Y5M8 271 aaKnown RBP13.9□□□□□ -0.18
SKA1-203ENST00000417656 MORC2Q9Y6X9 1032 aaPredicted RBP13.9□□□□□ -0.18
SKA1-203ENST00000417656 E9PMD0 336 aa13.89□□□□□ -0.19
SKA1-203ENST00000417656 SPTLC2O15270 562 aa13.89□□□□□ -0.19
SKA1-203ENST00000417656 GAS2O43903 313 aaKnown RBP13.89□□□□□ -0.19
SKA1-203ENST00000417656 DGAT1O75907 488 aa13.89□□□□□ -0.19
SKA1-203ENST00000417656 XRCC6P12956 609 aaKnown RBP eCLIP13.89□□□□□ -0.19
SKA1-203ENST00000417656 CD52P31358 61 aa13.89□□□□□ -0.19
SKA1-203ENST00000417656 UBA7P41226 1012 aa13.89□□□□□ -0.19
SKA1-203ENST00000417656 DNM2P50570 870 aa13.89□□□□□ -0.19
SKA1-203ENST00000417656 KARSQ15046 597 aaKnown RBP13.89□□□□□ -0.19
SKA1-203ENST00000417656 HYIQ5T013 277 aa13.89□□□□□ -0.19
SKA1-203ENST00000417656 PADI6Q6TGC4 694 aa13.89□□□□□ -0.19
SKA1-203ENST00000417656 USP49Q70CQ1 688 aa13.89□□□□□ -0.19
SKA1-203ENST00000417656 RHPN2Q8IUC4 686 aa13.89□□□□□ -0.19
SKA1-203ENST00000417656 KSR1Q8IVT5 923 aa13.89□□□□□ -0.19
SKA1-203ENST00000417656 EXOC8Q8IYI6 725 aa13.89□□□□□ -0.19
SKA1-203ENST00000417656 KRI1Q8N9T8 703 aaKnown RBP13.89□□□□□ -0.19
SKA1-203ENST00000417656 RASSF8Q8NHQ8 419 aa13.89□□□□□ -0.19
SKA1-203ENST00000417656 NLRP7Q8WX94 980 aa13.89□□□□□ -0.19
SKA1-203ENST00000417656 PSPC1Q8WXF1 523 aaKnown RBP13.89□□□□□ -0.19
SKA1-203ENST00000417656 NLRP4Q96MN2 994 aa13.89□□□□□ -0.19
SKA1-203ENST00000417656 ADAMTS10Q9H324 1103 aa13.89□□□□□ -0.19
SKA1-203ENST00000417656 BAIAP3O94812 1187 aa13.88□□□□□ -0.19
SKA1-203ENST00000417656 EYA4O95677 639 aa13.88□□□□□ -0.19
SKA1-203ENST00000417656 NCLP19338 710 aaKnown RBP13.88□□□□□ -0.19
SKA1-203ENST00000417656 CRYBB1P53674 252 aaPredicted RBP13.88□□□□□ -0.19
SKA1-203ENST00000417656 WDR5P61964 334 aaKnown RBP13.88□□□□□ -0.19
SKA1-203ENST00000417656 PAK2Q13177 524 aa13.88□□□□□ -0.19
SKA1-203ENST00000417656 FAM109BQ6ICB4 259 aaPredicted RBP13.88□□□□□ -0.19
SKA1-203ENST00000417656 MAEAQ7L5Y9 396 aa13.88□□□□□ -0.19
SKA1-203ENST00000417656 ASAP3Q8TDY4 903 aa13.88□□□□□ -0.19
SKA1-203ENST00000417656 TCP11Q8WWU5 503 aa13.88□□□□□ -0.19
SKA1-203ENST00000417656 SYMPKQ92797 1274 aaKnown RBP13.88□□□□□ -0.19
SKA1-203ENST00000417656 CALML4Q96GE6 196 aa13.88□□□□□ -0.19
SKA1-203ENST00000417656 EPSTI1Q96J88 318 aa13.88□□□□□ -0.19
SKA1-203ENST00000417656 NT5C3AQ9H0P0 336 aa13.88□□□□□ -0.19
SKA1-203ENST00000417656 POLR3FQ9H1D9 316 aaPredicted RBP13.88□□□□□ -0.19
SKA1-203ENST00000417656 GPRC5CQ9NQ84 441 aa13.88□□□□□ -0.19
SKA1-203ENST00000417656 NOC2LQ9Y3T9 749 aaKnown RBP13.88□□□□□ -0.19
SKA1-203ENST00000417656 COL4A3BPQ9Y5P4 624 aa13.88□□□□□ -0.19
SKA1-203ENST00000417656 A0A087WZ62 844 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 SOX1O00570 391 aaPredicted RBP13.87□□□□□ -0.19
SKA1-203ENST00000417656 SLC26A4O43511 780 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 PPP6R2O75170 966 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 RPS6KA5O75582 802 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 PLCG1P19174 1290 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 KCNJ6P48051 423 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 DEFB103AP81534 67 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 IKBKEQ14164 716 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 LRIT3Q3SXY7 679 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 ATL3Q6DD88 541 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 FAM228AQ86W67 206 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 USP38Q8NB14 1042 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 MCPH1Q8NEM0 835 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 LRRC15Q8TF66 581 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 PRPF31Q8WWY3 499 aaKnown RBP13.87□□□□□ -0.19
SKA1-203ENST00000417656 LINC01599Q8WXQ3 324 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 APBB2Q92870 758 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 FDXACB1Q9BRP7 624 aaPredicted RBP13.87□□□□□ -0.19
SKA1-203ENST00000417656 RUSC1Q9BVN2 902 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 CCSER1Q9C0I3 900 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 ERVK-5Q9HDB9 667 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 PADI3Q9ULW8 664 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 DNM3Q9UQ16 869 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 SLC4A7Q9Y6M7 1214 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 SQORQ9Y6N5 450 aa13.87□□□□□ -0.19
SKA1-203ENST00000417656 TCHHQ07283 1943 aa13.86□□□□□ -0.19
SKA1-203ENST00000417656 ABHD14A-ACY1A0A1B0GW23 586 aa13.86□□□□□ -0.19
SKA1-203ENST00000417656 GRXCR1A8MXD5 290 aa13.86□□□□□ -0.19
SKA1-203ENST00000417656 SSBP05455 408 aaKnown RBP eCLIP13.86□□□□□ -0.19
SKA1-203ENST00000417656 DARSP14868 501 aaKnown RBP13.86□□□□□ -0.19
SKA1-203ENST00000417656 CYP11B2P19099 503 aa13.86□□□□□ -0.19
SKA1-203ENST00000417656 FGFR4P22455 802 aa13.86□□□□□ -0.19
SKA1-203ENST00000417656 TXLNAP40222 546 aa13.86□□□□□ -0.19
SKA1-203ENST00000417656 KRT85P78386 507 aa13.86□□□□□ -0.19
SKA1-203ENST00000417656 NUCB2P80303 420 aa13.86□□□□□ -0.19
SKA1-203ENST00000417656 LAMTOR4Q0VGL1 99 aa13.86□□□□□ -0.19
SKA1-203ENST00000417656 NFX1Q12986 1120 aaKnown RBP13.86□□□□□ -0.19
SKA1-203ENST00000417656 CAPSQ13938 189 aa13.86□□□□□ -0.19
SKA1-203ENST00000417656 FAM102BQ5T8I3 360 aa13.86□□□□□ -0.19
SKA1-203ENST00000417656 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.86□□□□□ -0.19
SKA1-203ENST00000417656 TMCO2Q7Z6W1 182 aaPredicted RBP13.86□□□□□ -0.19
SKA1-203ENST00000417656 ZNF410Q86VK4 478 aa13.86□□□□□ -0.19
SKA1-203ENST00000417656 ZNF710Q8N1W2 664 aa13.86□□□□□ -0.19
SKA1-203ENST00000417656 KCNG4Q8TDN1 519 aa13.86□□□□□ -0.19
SKA1-203ENST00000417656 SLC9A7Q96T83 725 aa13.86□□□□□ -0.19
SKA1-203ENST00000417656 TMX1Q9H3N1 280 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms