RNA–Protein interactions for RNA: ENST00000417521.5

DDR1-231, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 5

Gene DDR1, Length 1,479 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-231	ENST00000417521	RB1	P06400	928 aa		18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	ATP2B1	P20020	1258 aa		18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	YWHAB	P31946	246 aa	Known RBP	18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	MCM7	P33993	719 aa		18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	TRAPPC10	P48553	1259 aa		18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	NPEPPS	P55786	919 aa		18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	GNL2	Q13823	731 aa	Known RBP	18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	BTG3	Q14201	252 aa	Predicted RBP	18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	DSC3	Q14574	896 aa		18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	PLA2G4F	Q68DD2	849 aa		18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	TPH2	Q8IWU9	490 aa		18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	NEK9	Q8TD19	979 aa		18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	NLRP7	Q8WX94	980 aa		18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	SLC7A3	Q8WY07	619 aa		18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	CLP1	Q92989	425 aa	Known RBP	18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	CEP170P1	Q96L14	293 aa		18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	DHX33	Q9H6R0	707 aa	Known RBP	18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	PRDM6	Q9NQX0	595 aa		18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	SUCLA2	Q9P2R7	463 aa	Predicted RBP	18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	LRFN2	Q9ULH4	789 aa		18.32	■□□□□ 0.52
DDR1-231	ENST00000417521	PRUNE2	Q8WUY3	3088 aa		18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	COL4A6	Q14031	1691 aa		18.31	■□□□□ 0.52
DDR1-231	ENST00000417521		H3BNC9	293 aa		18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	U2AF2	P26368	475 aa	Known RBP eCLIP	18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	BMPR1A	P36894	532 aa		18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	RFC5	P40937	340 aa		18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	FAM189B	P81408	668 aa		18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	CYP4A11	Q02928	519 aa		18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	CTTN	Q14247	550 aa	Known RBP	18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	LARP1B	Q659C4	914 aa	Known RBP	18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	ZNF410	Q86VK4	478 aa		18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	CMTR2	Q8IYT2	770 aa	Known RBP	18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	ATXN2L	Q8WWM7	1075 aa	Known RBP	18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	SCLT1	Q96NL6	688 aa		18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	GCOM2	Q9BZD3	368 aa	Predicted RBP	18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	TMEM60	Q9H2L4	133 aa		18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	THEG	Q9P2T0	379 aa		18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	PCDHB7	Q9Y5E2	793 aa		18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	MYO9B	Q13459	2157 aa		18.31	■□□□□ 0.52
DDR1-231	ENST00000417521	C5orf67	F2Z3F1	127 aa		18.3	■□□□□ 0.52
DDR1-231	ENST00000417521	GAS2	O43903	313 aa	Known RBP	18.3	■□□□□ 0.52
DDR1-231	ENST00000417521	LINC00271	P0C7V0	271 aa		18.3	■□□□□ 0.52
DDR1-231	ENST00000417521	ZSCAN20	P17040	1043 aa	Predicted RBP	18.3	■□□□□ 0.52
DDR1-231	ENST00000417521	POLG	P54098	1239 aa	Predicted RBP	18.3	■□□□□ 0.52
DDR1-231	ENST00000417521	ZNF579	Q8NAF0	562 aa	Known RBP	18.3	■□□□□ 0.52
DDR1-231	ENST00000417521	ZNF668	Q96K58	619 aa	Predicted RBP	18.3	■□□□□ 0.52
DDR1-231	ENST00000417521	INO80B	Q9C086	356 aa	Predicted RBP	18.3	■□□□□ 0.52
DDR1-231	ENST00000417521	ELAC1	Q9H777	363 aa	Known RBP	18.3	■□□□□ 0.52
DDR1-231	ENST00000417521	GBF1	Q92538	1859 aa		18.3	■□□□□ 0.52
DDR1-231	ENST00000417521	MICAL3	Q7RTP6	2002 aa		18.3	■□□□□ 0.52
DDR1-231	ENST00000417521	PTPRS	Q13332	1948 aa		18.29	■□□□□ 0.52
DDR1-231	ENST00000417521	ANP32A	P39687	249 aa	Known RBP	18.29	■□□□□ 0.52
DDR1-231	ENST00000417521	GPM6B	Q13491	265 aa		18.29	■□□□□ 0.52
DDR1-231	ENST00000417521	ZNF174	Q15697	407 aa		18.29	■□□□□ 0.52
DDR1-231	ENST00000417521	PTPRO	Q16827	1216 aa		18.29	■□□□□ 0.52
DDR1-231	ENST00000417521	XKR9	Q5GH70	373 aa		18.29	■□□□□ 0.52
DDR1-231	ENST00000417521	RHPN2	Q8IUC4	686 aa		18.29	■□□□□ 0.52
DDR1-231	ENST00000417521	TMEM161A	Q9NX61	479 aa		18.29	■□□□□ 0.52
DDR1-231	ENST00000417521	NOL7	Q9UMY1	257 aa	Known RBP	18.29	■□□□□ 0.52
DDR1-231	ENST00000417521	RBM19	Q9Y4C8	960 aa	Known RBP	18.29	■□□□□ 0.52
DDR1-231	ENST00000417521	TRANK1	O15050	2925 aa		18.29	■□□□□ 0.52
DDR1-231	ENST00000417521		A0A087WZ62	844 aa		18.28	■□□□□ 0.52
DDR1-231	ENST00000417521		H3BQV1	296 aa		18.28	■□□□□ 0.52
DDR1-231	ENST00000417521	XRCC6	P12956	609 aa	Known RBP eCLIP	18.28	■□□□□ 0.52
DDR1-231	ENST00000417521	CTNNB1	P35222	781 aa		18.28	■□□□□ 0.52
DDR1-231	ENST00000417521	SKIV2L	Q15477	1246 aa	Known RBP	18.28	■□□□□ 0.52
DDR1-231	ENST00000417521	TTC38	Q5R3I4	469 aa		18.28	■□□□□ 0.52
DDR1-231	ENST00000417521	MRPL38	Q96DV4	380 aa	Known RBP	18.28	■□□□□ 0.52
DDR1-231	ENST00000417521	FDXACB1	Q9BRP7	624 aa	Predicted RBP	18.28	■□□□□ 0.52
DDR1-231	ENST00000417521	C11orf84	Q9BUA3	381 aa	Predicted RBP	18.28	■□□□□ 0.52
DDR1-231	ENST00000417521	PLVAP	Q9BX97	442 aa		18.28	■□□□□ 0.52
DDR1-231	ENST00000417521	CHST12	Q9NRB3	414 aa		18.28	■□□□□ 0.52
DDR1-231	ENST00000417521	ANKEF1	Q9NU02	776 aa		18.28	■□□□□ 0.52
DDR1-231	ENST00000417521	ZBTB39	O15060	712 aa		18.27	■□□□□ 0.52
DDR1-231	ENST00000417521	OR52Z1	P0C646	297 aa		18.27	■□□□□ 0.52
DDR1-231	ENST00000417521	SYT1	P21579	422 aa		18.27	■□□□□ 0.52
DDR1-231	ENST00000417521	TCP11	Q8WWU5	503 aa		18.27	■□□□□ 0.52
DDR1-231	ENST00000417521	PSPC1	Q8WXF1	523 aa	Known RBP	18.27	■□□□□ 0.52
DDR1-231	ENST00000417521	ATP6V0A4	Q9HBG4	840 aa		18.27	■□□□□ 0.52
DDR1-231	ENST00000417521	COG5	Q9UP83	839 aa		18.27	■□□□□ 0.52
DDR1-231	ENST00000417521	COL4A3BP	Q9Y5P4	624 aa		18.27	■□□□□ 0.52
DDR1-231	ENST00000417521	VPS37C	A5D8V6	355 aa	Predicted RBP	18.26	■□□□□ 0.51
DDR1-231	ENST00000417521	POTEM	A6NI47	508 aa		18.26	■□□□□ 0.51
DDR1-231	ENST00000417521	ASAP2	O43150	1006 aa		18.26	■□□□□ 0.51
DDR1-231	ENST00000417521	PDC	P20941	246 aa		18.26	■□□□□ 0.51
DDR1-231	ENST00000417521	SFPQ	P23246	707 aa	Known RBP eCLIP	18.26	■□□□□ 0.51
DDR1-231	ENST00000417521	MRPS5	P82675	430 aa	Known RBP	18.26	■□□□□ 0.51
DDR1-231	ENST00000417521	NAALADL2	Q58DX5	795 aa		18.26	■□□□□ 0.51
DDR1-231	ENST00000417521	TJAP1	Q5JTD0	557 aa		18.26	■□□□□ 0.51
DDR1-231	ENST00000417521	PRPF31	Q8WWY3	499 aa	Known RBP	18.26	■□□□□ 0.51
DDR1-231	ENST00000417521	DACT1	Q9NYF0	836 aa		18.26	■□□□□ 0.51
DDR1-231	ENST00000417521	MRPL42	Q9Y6G3	142 aa	Known RBP	18.26	■□□□□ 0.51
DDR1-231	ENST00000417521	SPTBN5	Q9NRC6	3674 aa	Known RBP	18.26	■□□□□ 0.51
DDR1-231	ENST00000417521	SI	P14410	1827 aa		18.26	■□□□□ 0.51
DDR1-231	ENST00000417521	TTC3	P53804	2025 aa		18.26	■□□□□ 0.51
DDR1-231	ENST00000417521		A0A0U1RQF3	1178 aa		18.26	■□□□□ 0.51
DDR1-231	ENST00000417521	CSDE1	O75534	798 aa	Known RBP	18.26	■□□□□ 0.51
DDR1-231	ENST00000417521	SPATA31C1	P0DKV0	1188 aa		18.26	■□□□□ 0.51
DDR1-231	ENST00000417521	IBSP	P21815	317 aa	Predicted RBP	18.26	■□□□□ 0.51
DDR1-231	ENST00000417521	FGFR4	P22455	802 aa		18.26	■□□□□ 0.51

Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms