RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 OR6B3Q8NGW1 331 aa16.81■□□□□ 0.28
PHRF1-203ENST00000416188 SCFD2Q8WU76 684 aa16.81■□□□□ 0.28
PHRF1-203ENST00000416188 EFCC1Q9HA90 598 aa16.81■□□□□ 0.28
PHRF1-203ENST00000416188 DPYSL4O14531 572 aa16.81■□□□□ 0.28
PHRF1-203ENST00000416188 PPP4CP60510 307 aa16.81■□□□□ 0.28
PHRF1-203ENST00000416188 SNX1Q13596 522 aa16.81■□□□□ 0.28
PHRF1-203ENST00000416188 RNF10Q8N5U6 811 aaKnown RBP16.81■□□□□ 0.28
PHRF1-203ENST00000416188 DPF2Q92785 391 aa16.81■□□□□ 0.28
PHRF1-203ENST00000416188 SGK1O00141 431 aa16.81■□□□□ 0.28
PHRF1-203ENST00000416188 UPP2O95045 317 aa16.81■□□□□ 0.28
PHRF1-203ENST00000416188 SCARA5Q6ZMJ2 495 aa16.81■□□□□ 0.28
PHRF1-203ENST00000416188 RFX6Q8HWS3 928 aa16.81■□□□□ 0.28
PHRF1-203ENST00000416188 SCYL1Q96KG9 808 aa16.81■□□□□ 0.28
PHRF1-203ENST00000416188 VCXQ9H320 206 aa16.81■□□□□ 0.28
PHRF1-203ENST00000416188 CD58P19256 250 aa16.8■□□□□ 0.28
PHRF1-203ENST00000416188 BACE1P56817 501 aa16.8■□□□□ 0.28
PHRF1-203ENST00000416188 RINT1Q6NUQ1 792 aa16.8■□□□□ 0.28
PHRF1-203ENST00000416188 C1orf228Q6PIY5 440 aa16.8■□□□□ 0.28
PHRF1-203ENST00000416188 SIX6OS1Q8N1H7 587 aa16.8■□□□□ 0.28
PHRF1-203ENST00000416188 UBE2TQ9NPD8 197 aaPredicted RBP16.8■□□□□ 0.28
PHRF1-203ENST00000416188 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.8■□□□□ 0.28
PHRF1-203ENST00000416188 MOCS3O95396 460 aa16.8■□□□□ 0.28
PHRF1-203ENST00000416188 KIF11P52732 1056 aa16.8■□□□□ 0.28
PHRF1-203ENST00000416188 PLTPP55058 493 aa16.8■□□□□ 0.28
PHRF1-203ENST00000416188 SYT17Q9BSW7 474 aa16.8■□□□□ 0.28
PHRF1-203ENST00000416188 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.8■□□□□ 0.28
PHRF1-203ENST00000416188 RNF139Q8WU17 664 aa16.8■□□□□ 0.28
PHRF1-203ENST00000416188 SEPT1Q8WYJ6 367 aa16.8■□□□□ 0.28
PHRF1-203ENST00000416188 MROH2AA6NES4 1674 aa16.8■□□□□ 0.28
PHRF1-203ENST00000416188 MXI1P50539 228 aa16.8■□□□□ 0.28
PHRF1-203ENST00000416188 LXNQ9BS40 222 aa16.8■□□□□ 0.28
PHRF1-203ENST00000416188 SPZ1Q9BXG8 430 aa16.8■□□□□ 0.28
PHRF1-203ENST00000416188 NDST4Q9H3R1 872 aa16.8■□□□□ 0.28
PHRF1-203ENST00000416188 SMARCAD1Q9H4L7 1026 aa16.8■□□□□ 0.28
PHRF1-203ENST00000416188 STK36Q9NRP7 1315 aa16.79■□□□□ 0.28
PHRF1-203ENST00000416188 ADCY1Q08828 1119 aa16.79■□□□□ 0.28
PHRF1-203ENST00000416188 TOB2Q14106 344 aaPredicted RBP16.79■□□□□ 0.28
PHRF1-203ENST00000416188 NEURL4Q96JN8 1562 aa16.79■□□□□ 0.28
PHRF1-203ENST00000416188 PGRMC1O00264 195 aaKnown RBP16.79■□□□□ 0.28
PHRF1-203ENST00000416188 PHLDB2Q86SQ0 1253 aa16.79■□□□□ 0.28
PHRF1-203ENST00000416188 POLR3FQ9H1D9 316 aaPredicted RBP16.79■□□□□ 0.28
PHRF1-203ENST00000416188 NHEJ1Q9H9Q4 299 aaPredicted RBP16.79■□□□□ 0.28
PHRF1-203ENST00000416188 WNT10BO00744 389 aa16.79■□□□□ 0.28
PHRF1-203ENST00000416188 CASQ2O14958 399 aaPredicted RBP16.79■□□□□ 0.28
PHRF1-203ENST00000416188 USP11P51784 963 aa16.79■□□□□ 0.28
PHRF1-203ENST00000416188 DMTNQ08495 405 aa16.79■□□□□ 0.28
PHRF1-203ENST00000416188 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.79■□□□□ 0.28
PHRF1-203ENST00000416188 RUNDC3BQ96NL0 473 aa16.79■□□□□ 0.28
PHRF1-203ENST00000416188 ATP8A1Q9Y2Q0 1164 aa16.79■□□□□ 0.28
PHRF1-203ENST00000416188 CDC27P30260 824 aa16.79■□□□□ 0.28
PHRF1-203ENST00000416188 APBA1Q02410 837 aa16.79■□□□□ 0.28
PHRF1-203ENST00000416188 DEFB115Q30KQ5 88 aa16.79■□□□□ 0.28
PHRF1-203ENST00000416188 CYP4F22Q6NT55 531 aa16.79■□□□□ 0.28
PHRF1-203ENST00000416188 RYBPQ8N488 228 aaPredicted RBP16.79■□□□□ 0.28
PHRF1-203ENST00000416188 AGBL1Q96MI9 1066 aa16.79■□□□□ 0.28
PHRF1-203ENST00000416188 NDUFA10O95299 355 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 GSTA1P08263 222 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 GSTA2P09210 222 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 LIG3P49916 1009 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 SGO2Q562F6 1265 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 C4orf50Q6ZRC1 276 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 BEST2Q8NFU1 509 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 HEXIM2Q96MH2 286 aaKnown RBP16.78■□□□□ 0.28
PHRF1-203ENST00000416188 THAP9Q9H5L6 903 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 SLC16A4O15374 487 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 TSPY1Q01534 308 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 C2orf54Q08AI8 447 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 CUL4BQ13620 913 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 CDCA5Q96FF9 252 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 FAM114A2Q9NRY5 505 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 CPT1AP50416 773 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 PDE1BQ01064 536 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 LMNB2Q03252 620 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 IER5Q5VY09 327 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 ACER1Q8TDN7 264 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 LRRC8CQ8TDW0 803 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 TRIM11Q96F44 468 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 INTS9Q9NV88 658 aaKnown RBP16.78■□□□□ 0.28
PHRF1-203ENST00000416188 TDP2O95551 362 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 INHBAP08476 426 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 CHADLQ6NUI6 762 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 SCN4BQ8IWT1 228 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 CCDC68Q9H2F9 335 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 PIN4Q9Y237 131 aaKnown RBP16.78■□□□□ 0.28
PHRF1-203ENST00000416188 TRIM17Q9Y577 477 aa16.78■□□□□ 0.28
PHRF1-203ENST00000416188 HUS1O60921 280 aa16.77■□□□□ 0.28
PHRF1-203ENST00000416188 IL1R1P14778 569 aa16.77■□□□□ 0.28
PHRF1-203ENST00000416188 KRT31Q15323 416 aa16.77■□□□□ 0.28
PHRF1-203ENST00000416188 ZNF667Q5HYK9 610 aa16.77■□□□□ 0.28
PHRF1-203ENST00000416188 CDKL2Q92772 493 aa16.77■□□□□ 0.28
PHRF1-203ENST00000416188 DCDC2CA8MYV0 355 aa16.77■□□□□ 0.28
PHRF1-203ENST00000416188 PDHXO00330 501 aa16.77■□□□□ 0.28
PHRF1-203ENST00000416188 CCT5P48643 541 aa16.77■□□□□ 0.28
PHRF1-203ENST00000416188 PSMD2Q13200 908 aa16.77■□□□□ 0.28
PHRF1-203ENST00000416188 ARRDC4Q8NCT1 418 aa16.77■□□□□ 0.28
PHRF1-203ENST00000416188 FAM81BQ96LP2 452 aa16.77■□□□□ 0.28
PHRF1-203ENST00000416188 PPLO60437 1756 aa16.77■□□□□ 0.28
PHRF1-203ENST00000416188 E9PMD0 336 aa16.77■□□□□ 0.27
PHRF1-203ENST00000416188 HOXA10P31260 410 aaPredicted RBP16.77■□□□□ 0.27
PHRF1-203ENST00000416188 EPHB4P54760 987 aa16.77■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms