RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 FBXO18Q8NFZ0 1043 aa18.27■□□□□ 0.52
LSM1-201ENST00000311351 NLRP7Q8WX94 980 aa18.27■□□□□ 0.52
LSM1-201ENST00000311351 TBC1D32Q96NH3 1257 aa18.27■□□□□ 0.52
LSM1-201ENST00000311351 SAMD11Q96NU1 681 aa18.27■□□□□ 0.52
LSM1-201ENST00000311351 COL25A1Q9BXS0 654 aaPredicted RBP18.27■□□□□ 0.52
LSM1-201ENST00000311351 TTC12Q9H892 705 aaPredicted RBP18.27■□□□□ 0.52
LSM1-201ENST00000311351 POTEMA6NI47 508 aa18.26■□□□□ 0.51
LSM1-201ENST00000311351 C9IYK1 514 aa18.26■□□□□ 0.51
LSM1-201ENST00000311351 DKC1O60832 514 aaKnown RBP eCLIP18.26■□□□□ 0.51
LSM1-201ENST00000311351 MAFO75444 373 aaPredicted RBP18.26■□□□□ 0.51
LSM1-201ENST00000311351 CSDE1O75534 798 aaKnown RBP18.26■□□□□ 0.51
LSM1-201ENST00000311351 STAG3L1P0CL83 205 aa18.26■□□□□ 0.51
LSM1-201ENST00000311351 DARSP14868 501 aaKnown RBP18.26■□□□□ 0.51
LSM1-201ENST00000311351 EIF4BP23588 611 aaKnown RBP18.26■□□□□ 0.51
LSM1-201ENST00000311351 TXKP42681 527 aa18.26■□□□□ 0.51
LSM1-201ENST00000311351 DSC3Q14574 896 aa18.26■□□□□ 0.51
LSM1-201ENST00000311351 ODR4Q5SWX8 454 aa18.26■□□□□ 0.51
LSM1-201ENST00000311351 C4orf19Q8IY42 314 aa18.26■□□□□ 0.51
LSM1-201ENST00000311351 CEP170P1Q96L14 293 aa18.26■□□□□ 0.51
LSM1-201ENST00000311351 MTMR9Q96QG7 549 aa18.26■□□□□ 0.51
LSM1-201ENST00000311351 EIF2AK1Q9BQI3 630 aaKnown RBP18.26■□□□□ 0.51
LSM1-201ENST00000311351 FOXP1Q9H334 677 aaPredicted RBP18.26■□□□□ 0.51
LSM1-201ENST00000311351 RGS18Q9NS28 235 aa18.26■□□□□ 0.51
LSM1-201ENST00000311351 LRFN2Q9ULH4 789 aa18.26■□□□□ 0.51
LSM1-201ENST00000311351 PCDHA12Q9UN75 941 aa18.26■□□□□ 0.51
LSM1-201ENST00000311351 MRPL42Q9Y6G3 142 aaKnown RBP18.26■□□□□ 0.51
LSM1-201ENST00000311351 A0A087WZ62 844 aa18.25■□□□□ 0.51
LSM1-201ENST00000311351 ZBTB39O15060 712 aa18.25■□□□□ 0.51
LSM1-201ENST00000311351 YWHABP31946 246 aaKnown RBP18.25■□□□□ 0.51
LSM1-201ENST00000311351 GPM6BQ13491 265 aa18.25■□□□□ 0.51
LSM1-201ENST00000311351 KSR1Q8IVT5 923 aa18.25■□□□□ 0.51
LSM1-201ENST00000311351 TPH2Q8IWU9 490 aa18.25■□□□□ 0.51
LSM1-201ENST00000311351 CMTR2Q8IYT2 770 aaKnown RBP18.25■□□□□ 0.51
LSM1-201ENST00000311351 TMX3Q96JJ7 454 aa18.25■□□□□ 0.51
LSM1-201ENST00000311351 FDXACB1Q9BRP7 624 aaPredicted RBP18.25■□□□□ 0.51
LSM1-201ENST00000311351 C1orf112Q9NSG2 853 aa18.25■□□□□ 0.51
LSM1-201ENST00000311351 SUCLA2Q9P2R7 463 aaPredicted RBP18.25■□□□□ 0.51
LSM1-201ENST00000311351 H3BNC9 293 aa18.24■□□□□ 0.51
LSM1-201ENST00000311351 SLITRK3O94933 977 aa18.24■□□□□ 0.51
LSM1-201ENST00000311351 POLGP54098 1239 aaPredicted RBP18.24■□□□□ 0.51
LSM1-201ENST00000311351 TFF2Q03403 129 aa18.24■□□□□ 0.51
LSM1-201ENST00000311351 GNL2Q13823 731 aaKnown RBP18.24■□□□□ 0.51
LSM1-201ENST00000311351 NBR1Q14596 966 aa18.24■□□□□ 0.51
LSM1-201ENST00000311351 ZNF174Q15697 407 aa18.24■□□□□ 0.51
LSM1-201ENST00000311351 SLC24A5Q71RS6 500 aa18.24■□□□□ 0.51
LSM1-201ENST00000311351 RHPN2Q8IUC4 686 aa18.24■□□□□ 0.51
LSM1-201ENST00000311351 NOSTRINQ8IVI9 506 aa18.24■□□□□ 0.51
LSM1-201ENST00000311351 SLC7A3Q8WY07 619 aa18.24■□□□□ 0.51
LSM1-201ENST00000311351 CLP1Q92989 425 aaKnown RBP18.24■□□□□ 0.51
LSM1-201ENST00000311351 NLRP4Q96MN2 994 aa18.24■□□□□ 0.51
LSM1-201ENST00000311351 ZSWIM4Q9H7M6 989 aa18.24■□□□□ 0.51
LSM1-201ENST00000311351 LMCD1Q9NZU5 365 aa18.24■□□□□ 0.51
LSM1-201ENST00000311351 XIRP2A4UGR9 3374 aa18.24■□□□□ 0.51
LSM1-201ENST00000311351 PLXNA4Q9HCM2 1894 aa18.23■□□□□ 0.51
LSM1-201ENST00000311351 FGFR1P11362 822 aa18.23■□□□□ 0.51
LSM1-201ENST00000311351 BMPR1AP36894 532 aa18.23■□□□□ 0.51
LSM1-201ENST00000311351 DNM2P50570 870 aa18.23■□□□□ 0.51
LSM1-201ENST00000311351 EMC2Q15006 297 aa18.23■□□□□ 0.51
LSM1-201ENST00000311351 XKR9Q5GH70 373 aa18.23■□□□□ 0.51
LSM1-201ENST00000311351 TTC38Q5R3I4 469 aa18.23■□□□□ 0.51
LSM1-201ENST00000311351 ZNF710Q8N1W2 664 aa18.23■□□□□ 0.51
LSM1-201ENST00000311351 TMEM143Q96AN5 459 aa18.23■□□□□ 0.51
LSM1-201ENST00000311351 MRPL38Q96DV4 380 aaKnown RBP18.23■□□□□ 0.51
LSM1-201ENST00000311351 JPH2Q9BR39 696 aaPredicted RBP18.23■□□□□ 0.51
LSM1-201ENST00000311351 GCOM2Q9BZD3 368 aaPredicted RBP18.23■□□□□ 0.51
LSM1-201ENST00000311351 DHX33Q9H6R0 707 aaKnown RBP18.23■□□□□ 0.51
LSM1-201ENST00000311351 HCSTQ9UBK5 93 aa18.23■□□□□ 0.51
LSM1-201ENST00000311351 PCDHB7Q9Y5E2 793 aa18.23■□□□□ 0.51
LSM1-201ENST00000311351 TCF20Q9UGU0 1960 aaKnown RBP18.22■□□□□ 0.51
LSM1-201ENST00000311351 C5orf67F2Z3F1 127 aa18.22■□□□□ 0.51
LSM1-201ENST00000311351 CSPG5O95196 566 aa18.22■□□□□ 0.51
LSM1-201ENST00000311351 OR52Z1P0C646 297 aa18.22■□□□□ 0.51
LSM1-201ENST00000311351 RFC5P40937 340 aa18.22■□□□□ 0.51
LSM1-201ENST00000311351 TJAP1Q5JTD0 557 aa18.22■□□□□ 0.51
LSM1-201ENST00000311351 FAM102BQ5T8I3 360 aa18.22■□□□□ 0.51
LSM1-201ENST00000311351 NEK9Q8TD19 979 aa18.22■□□□□ 0.51
LSM1-201ENST00000311351 ATXN2LQ8WWM7 1075 aaKnown RBP18.22■□□□□ 0.51
LSM1-201ENST00000311351 HSD17B14Q9BPX1 270 aa18.22■□□□□ 0.51
LSM1-201ENST00000311351 RWDD3Q9Y3V2 267 aa18.22■□□□□ 0.51
LSM1-201ENST00000311351 COL4A3BPQ9Y5P4 624 aa18.22■□□□□ 0.51
LSM1-201ENST00000311351 A0A087WWV3 80 aa18.21■□□□□ 0.51
LSM1-201ENST00000311351 TBKBP1A7MCY6 615 aa18.21■□□□□ 0.51
LSM1-201ENST00000311351 GRM6O15303 877 aa18.21■□□□□ 0.51
LSM1-201ENST00000311351 ZSCAN20P17040 1043 aaPredicted RBP18.21■□□□□ 0.51
LSM1-201ENST00000311351 OTUD6AQ7L8S5 288 aa18.21■□□□□ 0.51
LSM1-201ENST00000311351 ZNF410Q86VK4 478 aa18.21■□□□□ 0.51
LSM1-201ENST00000311351 ASB2Q96Q27 587 aa18.21■□□□□ 0.51
LSM1-201ENST00000311351 C11orf84Q9BUA3 381 aaPredicted RBP18.21■□□□□ 0.51
LSM1-201ENST00000311351 ATP6V0A4Q9HBG4 840 aa18.21■□□□□ 0.51
LSM1-201ENST00000311351 XPNPEP1Q9NQW7 623 aa18.21■□□□□ 0.51
LSM1-201ENST00000311351 RNF19AQ9NV58 838 aa18.21■□□□□ 0.51
LSM1-201ENST00000311351 TMEM161AQ9NX61 479 aa18.21■□□□□ 0.51
LSM1-201ENST00000311351 PPME1Q9Y570 386 aa18.21■□□□□ 0.51
LSM1-201ENST00000311351 LYPLA2O95372 231 aa18.2■□□□□ 0.5
LSM1-201ENST00000311351 RB1P06400 928 aa18.2■□□□□ 0.5
LSM1-201ENST00000311351 SFPQP23246 707 aaKnown RBP eCLIP18.2■□□□□ 0.5
LSM1-201ENST00000311351 U2AF2P26368 475 aaKnown RBP eCLIP18.2■□□□□ 0.52e-7■■■□□ 15.9
LSM1-201ENST00000311351 GJB2P29033 226 aa18.2■□□□□ 0.5
LSM1-201ENST00000311351 FAM189BP81408 668 aa18.2■□□□□ 0.5
LSM1-201ENST00000311351 MRPS5P82675 430 aaKnown RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms