RNA–Protein interactions for RNA: YKL042W

SPC42, Transcript of Central plaque component of spindle pole body (SPB), yeast

Gene SPC42, Length 1,092 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPC42	YKL042W	RIB4	P50861	169 aa	Predicted RBP	4.58	□□□□□ -1.68
SPC42	YKL042W	DBP6	P53734	629 aa	Known RBP	4.58	□□□□□ -1.68
SPC42	YKL042W	YMR010W	Q03687	405 aa		4.58	□□□□□ -1.68
SPC42	YKL042W	HRI1	Q05905	244 aa	Known RBP	4.58	□□□□□ -1.68
SPC42	YKL042W	RIF2	Q06208	395 aa		4.58	□□□□□ -1.68
SPC42	YKL042W	YPR091C	Q06833	770 aa		4.58	□□□□□ -1.68
SPC42	YKL042W	YDL114W	Q07530	308 aa		4.58	□□□□□ -1.68
SPC42	YKL042W	FCY22	Q12119	530 aa		4.58	□□□□□ -1.68
SPC42	YKL042W	RAD1	P06777	1100 aa		4.57	□□□□□ -1.68
SPC42	YKL042W	MSI1	P13712	422 aa		4.57	□□□□□ -1.68
SPC42	YKL042W	CPR3	P25719	182 aa		4.57	□□□□□ -1.68
SPC42	YKL042W	RIB7	P33312	244 aa		4.57	□□□□□ -1.68
SPC42	YKL042W	BUD2	P33314	1104 aa		4.57	□□□□□ -1.68
SPC42	YKL042W	RFS1	P38234	210 aa	Known RBP	4.57	□□□□□ -1.68
SPC42	YKL042W	YPT35	P38815	214 aa	Known RBP	4.57	□□□□□ -1.68
SPC42	YKL042W	REE1	P40893	198 aa		4.57	□□□□□ -1.68
SPC42	YKL042W	MEP2	P41948	499 aa		4.57	□□□□□ -1.68
SPC42	YKL042W	NAS6	P50086	228 aa		4.57	□□□□□ -1.68
SPC42	YKL042W	VOA1	P53262	265 aa		4.57	□□□□□ -1.68
SPC42	YKL042W	BOR1	P53838	576 aa		4.57	□□□□□ -1.68
SPC42	YKL042W	YLR413W	Q06689	675 aa		4.57	□□□□□ -1.68
SPC42	YKL042W	PET123	P17558	318 aa		4.56	□□□□□ -1.68
SPC42	YKL042W	YUR1	P26725	428 aa		4.56	□□□□□ -1.68
SPC42	YKL042W	NAM9	P27929	486 aa		4.56	□□□□□ -1.68
SPC42	YKL042W	FUN26	P31381	517 aa		4.56	□□□□□ -1.68
SPC42	YKL042W	IML3	P38265	245 aa		4.56	□□□□□ -1.68
SPC42	YKL042W	PAN6	P40459	309 aa		4.56	□□□□□ -1.68
SPC42	YKL042W	CTK3	P46963	296 aa	Predicted RBP	4.56	□□□□□ -1.68
SPC42	YKL042W	MST27	P53176	234 aa		4.56	□□□□□ -1.68
SPC42	YKL042W	YGR168C	P53293	376 aa		4.56	□□□□□ -1.68
SPC42	YKL042W	RVB1	Q03940	463 aa	Known RBP	4.56	□□□□□ -1.68
SPC42	YKL042W	CSM3	Q04659	317 aa		4.56	□□□□□ -1.68
SPC42	YKL042W	RRG8	Q06109	277 aa		4.56	□□□□□ -1.68
SPC42	YKL042W	VAC14	Q06708	880 aa		4.56	□□□□□ -1.68
SPC42	YKL042W	TMS1	Q12116	473 aa		4.56	□□□□□ -1.68
SPC42	YKL042W	MRPL23	Q12487	163 aa	Predicted RBP	4.56	□□□□□ -1.68
SPC42	YKL042W	OM45	P16547	393 aa		4.55	□□□□□ -1.68
SPC42	YKL042W	SAR1	P20606	190 aa	Known RBP	4.55	□□□□□ -1.68
SPC42	YKL042W	RPL16A	P26784	199 aa	Known RBP	4.55	□□□□□ -1.68
SPC42	YKL042W	VMA5	P31412	392 aa	Known RBP	4.55	□□□□□ -1.68
SPC42	YKL042W	MKK1	P32490	508 aa		4.55	□□□□□ -1.68
SPC42	YKL042W	UTP25	P40498	721 aa	Known RBP	4.55	□□□□□ -1.68
SPC42	YKL042W	PNC1	P53184	216 aa	Known RBP	4.55	□□□□□ -1.68
SPC42	YKL042W	IMP4	P53941	290 aa	Known RBP	4.55	□□□□□ -1.68
SPC42	YKL042W	DCP1	Q12517	231 aa	Predicted RBP	4.55	□□□□□ -1.68
SPC42	YKL042W	INO80	P53115	1489 aa		4.55	□□□□□ -1.68
SPC42	YKL042W	PHO2	P07269	559 aa		4.54	□□□□□ -1.68
SPC42	YKL042W	MSS116	P15424	664 aa	Known RBP	4.54	□□□□□ -1.68
SPC42	YKL042W	RPB5	P20434	215 aa		4.54	□□□□□ -1.68
SPC42	YKL042W	CSE2	P33308	149 aa		4.54	□□□□□ -1.68
SPC42	YKL042W	AVT5	P38176	459 aa		4.54	□□□□□ -1.68
SPC42	YKL042W	YFR057W	P43625	151 aa		4.54	□□□□□ -1.68
SPC42	YKL042W	TAF6	P53040	516 aa		4.54	□□□□□ -1.68
SPC42	YKL042W	CLD1	P53264	445 aa		4.54	□□□□□ -1.68
SPC42	YKL042W	IRC25	Q07951	179 aa		4.54	□□□□□ -1.68
SPC42	YKL042W	YDL199C	Q12407	687 aa		4.54	□□□□□ -1.68
SPC42	YKL042W	PAA1	Q12447	191 aa	Known RBP	4.54	□□□□□ -1.68
SPC42	YKL042W	RRP36	Q12481	300 aa	Predicted RBP	4.54	□□□□□ -1.68
SPC42	YKL042W	UBA3	Q99344	299 aa		4.54	□□□□□ -1.68
SPC42	YKL042W	CAR2	P07991	424 aa	Known RBP	4.53	□□□□□ -1.68
SPC42	YKL042W	UGA1	P17649	471 aa		4.53	□□□□□ -1.68
SPC42	YKL042W	ERG9	P29704	444 aa		4.53	□□□□□ -1.68
SPC42	YKL042W	YKR015C	P36111	568 aa		4.53	□□□□□ -1.68
SPC42	YKL042W	EGT2	P42835	1041 aa		4.53	□□□□□ -1.68
SPC42	YKL042W	CIN2	P46670	268 aa		4.53	□□□□□ -1.68
SPC42	YKL042W	LOH1	P47055	219 aa		4.53	□□□□□ -1.68
SPC42	YKL042W	CWC22	P53333	577 aa	Known RBP	4.53	□□□□□ -1.68
SPC42	YKL042W	PXR1	P53335	271 aa	Predicted RBP	4.53	□□□□□ -1.68
SPC42	YKL042W	REX2	P54964	269 aa	Known RBP	4.53	□□□□□ -1.68
SPC42	YKL042W	SPO19	Q03029	223 aa		4.53	□□□□□ -1.68
SPC42	YKL042W	ECM18	Q04623	453 aa		4.53	□□□□□ -1.68
SPC42	YKL042W	CMS1	Q07897	291 aa	Known RBP	4.53	□□□□□ -1.68
SPC42	YKL042W	YDL109C	Q12103	647 aa		4.53	□□□□□ -1.68
SPC42	YKL042W	JID1	Q12350	301 aa		4.53	□□□□□ -1.68
SPC42	YKL042W	IZH2	Q12442	317 aa		4.53	□□□□□ -1.68
SPC42	YKL042W	YPR1	Q12458	312 aa		4.53	□□□□□ -1.68
SPC42	YKL042W	VPS45	P38932	577 aa		4.52	□□□□□ -1.69
SPC42	YKL042W	FET3	P38993	636 aa		4.52	□□□□□ -1.69
SPC42	YKL042W	YCH1	P42937	148 aa		4.52	□□□□□ -1.69
SPC42	YKL042W	YGR210C	P42942	411 aa		4.52	□□□□□ -1.69
SPC42	YKL042W	GCD14	P46959	383 aa	Predicted RBP	4.52	□□□□□ -1.69
SPC42	YKL042W	BIR1	P47134	954 aa		4.52	□□□□□ -1.69
SPC42	YKL042W	SHY1	P53266	389 aa		4.52	□□□□□ -1.69
SPC42	YKL042W	DNL4	Q08387	944 aa	Predicted RBP	4.52	□□□□□ -1.69
SPC42	YKL042W	FDH1	Q08911	376 aa		4.52	□□□□□ -1.69
SPC42	YKL042W	SUP35	P05453	685 aa	Known RBP	4.51	□□□□□ -1.69
SPC42	YKL042W	HEM4	P06174	275 aa		4.51	□□□□□ -1.69
SPC42	YKL042W	RPS18A	P0CX55	146 aa	Known RBP	4.51	□□□□□ -1.69
SPC42	YKL042W	RPS18B	P0CX56	146 aa	Predicted RBP	4.51	□□□□□ -1.69
SPC42	YKL042W	CBS2	P14905	389 aa		4.51	□□□□□ -1.69
SPC42	YKL042W	RBK1	P25332	333 aa		4.51	□□□□□ -1.69
SPC42	YKL042W	CHA1	P25379	360 aa	Known RBP	4.51	□□□□□ -1.69
SPC42	YKL042W	DCC1	P25559	380 aa		4.51	□□□□□ -1.69
SPC42	YKL042W	YNL208W	P40159	199 aa	Known RBP	4.51	□□□□□ -1.69
SPC42	YKL042W	CDC40	P40968	455 aa	Predicted RBP	4.51	□□□□□ -1.69
SPC42	YKL042W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	4.51	□□□□□ -1.69	not detected
SPC42	YKL042W	MFG1	Q07684	458 aa		4.51	□□□□□ -1.69
SPC42	YKL042W	ALE1	Q08548	619 aa		4.51	□□□□□ -1.69
SPC42	YKL042W	HMS1	Q12398	434 aa		4.51	□□□□□ -1.69
SPC42	YKL042W	ACB1	P31787	87 aa		4.5	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 14.1 ms