RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W ERV2Q12284 196 aa2.85□□□□□ -1.95
UPF3YGR072W JID1Q12350 301 aa2.85□□□□□ -1.95
UPF3YGR072W SPO24Q3E752 67 aa2.85□□□□□ -1.95
UPF3YGR072W GAL7P08431 366 aa2.84□□□□□ -1.95
UPF3YGR072W RPL18AP0CX49 186 aaKnown RBP2.84□□□□□ -1.95
UPF3YGR072W RPL18BP0CX50 186 aaKnown RBP2.84□□□□□ -1.95
UPF3YGR072W RPS16AP0CX51 143 aaKnown RBP2.84□□□□□ -1.95
UPF3YGR072W RPS16BP0CX52 143 aaKnown RBP2.84□□□□□ -1.95
UPF3YGR072W MSI1P13712 422 aa2.84□□□□□ -1.95
UPF3YGR072W PUT4P15380 627 aa2.84□□□□□ -1.95
UPF3YGR072W LDB16P25587 256 aa2.84□□□□□ -1.95
UPF3YGR072W RPL16AP26784 199 aaKnown RBP2.84□□□□□ -1.95
UPF3YGR072W PRR1P28708 518 aa2.84□□□□□ -1.95
UPF3YGR072W YKR015CP36111 568 aa2.84□□□□□ -1.95
UPF3YGR072W PEX32P38292 413 aa2.84□□□□□ -1.95
UPF3YGR072W SWC5P38326 303 aa2.84□□□□□ -1.95
UPF3YGR072W YNL208WP40159 199 aaKnown RBP2.84□□□□□ -1.95
UPF3YGR072W UTP25P40498 721 aaKnown RBP2.84□□□□□ -1.95
UPF3YGR072W KEG1P43614 200 aa2.84□□□□□ -1.95
UPF3YGR072W LOH1P47055 219 aa2.84□□□□□ -1.95
UPF3YGR072W YJR030CP47101 745 aa2.84□□□□□ -1.95
UPF3YGR072W YGL242CP53066 181 aa2.84□□□□□ -1.95
UPF3YGR072W MST27P53176 234 aa2.84□□□□□ -1.95
UPF3YGR072W COS1P53822 381 aa2.84□□□□□ -1.95
UPF3YGR072W TDA1Q03533 586 aa2.84□□□□□ -1.95
UPF3YGR072W VTI1Q04338 217 aa2.84□□□□□ -1.95
UPF3YGR072W RIF2Q06208 395 aa2.84□□□□□ -1.95
UPF3YGR072W FCY22Q12119 530 aa2.84□□□□□ -1.95
UPF3YGR072W DBP3P20447 523 aaKnown RBP2.83□□□□□ -1.96
UPF3YGR072W RBK1P25332 333 aa2.83□□□□□ -1.96
UPF3YGR072W ITR2P30606 609 aa2.83□□□□□ -1.96
UPF3YGR072W ACB1P31787 87 aa2.83□□□□□ -1.96
UPF3YGR072W YPS1P32329 569 aa2.83□□□□□ -1.96
UPF3YGR072W MYO3P36006 1272 aa2.83□□□□□ -1.96
UPF3YGR072W PAN6P40459 309 aa2.83□□□□□ -1.96
UPF3YGR072W REE1P40893 198 aa2.83□□□□□ -1.96
UPF3YGR072W MPP10P47083 593 aaKnown RBP2.83□□□□□ -1.96
UPF3YGR072W ABM1P47146 123 aa2.83□□□□□ -1.96
UPF3YGR072W RVB1Q03940 463 aaKnown RBP2.83□□□□□ -1.96
UPF3YGR072W YMR111CQ04461 462 aaPredicted RBP2.83□□□□□ -1.96
UPF3YGR072W STE23Q06010 1027 aa2.83□□□□□ -1.96
UPF3YGR072W CUR1Q06469 252 aa2.83□□□□□ -1.96
UPF3YGR072W YLH47Q06493 454 aa2.83□□□□□ -1.96
UPF3YGR072W YLR413WQ06689 675 aa2.83□□□□□ -1.96
UPF3YGR072W CMS1Q07897 291 aaKnown RBP2.83□□□□□ -1.96
UPF3YGR072W GAT3Q07928 141 aa2.83□□□□□ -1.96
UPF3YGR072W SLF1Q12034 447 aaKnown RBP2.83□□□□□ -1.96
UPF3YGR072W DCP1Q12517 231 aaPredicted RBP2.83□□□□□ -1.96
UPF3YGR072W UBA3Q99344 299 aa2.83□□□□□ -1.96
UPF3YGR072W RPS18AP0CX55 146 aaKnown RBP2.82□□□□□ -1.96
UPF3YGR072W RPS18BP0CX56 146 aaPredicted RBP2.82□□□□□ -1.96
UPF3YGR072W DAL5P15365 543 aa2.82□□□□□ -1.96
UPF3YGR072W OM45P16547 393 aa2.82□□□□□ -1.96
UPF3YGR072W FAR1P21268 830 aa2.82□□□□□ -1.96
UPF3YGR072W DCC1P25559 380 aa2.82□□□□□ -1.96
UPF3YGR072W ERG9P29704 444 aa2.82□□□□□ -1.96
UPF3YGR072W SPO23P33757 523 aa2.82□□□□□ -1.96
UPF3YGR072W IST2P38250 946 aa2.82□□□□□ -1.96
UPF3YGR072W YMR262WP38430 313 aa2.82□□□□□ -1.96
UPF3YGR072W YPT35P38815 214 aaKnown RBP2.82□□□□□ -1.96
UPF3YGR072W VPS45P38932 577 aa2.82□□□□□ -1.96
UPF3YGR072W YGR210CP42942 411 aa2.82□□□□□ -1.96
UPF3YGR072W YPI1P43587 155 aa2.82□□□□□ -1.96
UPF3YGR072W TAF6P53040 516 aa2.82□□□□□ -1.96
UPF3YGR072W YGR168CP53293 376 aa2.82□□□□□ -1.96
UPF3YGR072W REX2P54964 269 aaKnown RBP2.82□□□□□ -1.96
UPF3YGR072W YPR1Q12458 312 aa2.82□□□□□ -1.96
UPF3YGR072W DET1Q99288 334 aaKnown RBP2.82□□□□□ -1.96
UPF3YGR072W HEM4P06174 275 aa2.81□□□□□ -1.96
UPF3YGR072W RPS8AP0CX39 200 aaKnown RBP2.81□□□□□ -1.96
UPF3YGR072W RPS8BP0CX40 200 aaKnown RBP2.81□□□□□ -1.96
UPF3YGR072W MSS116P15424 664 aaKnown RBP2.81□□□□□ -1.96
UPF3YGR072W UGA1P17649 471 aa2.81□□□□□ -1.96
UPF3YGR072W NAM9P27929 486 aa2.81□□□□□ -1.96
UPF3YGR072W FUN26P31381 517 aa2.81□□□□□ -1.96
UPF3YGR072W MKK1P32490 508 aa2.81□□□□□ -1.96
UPF3YGR072W ZUO1P32527 433 aaKnown RBP2.81□□□□□ -1.96
UPF3YGR072W CSE2P33308 149 aa2.81□□□□□ -1.96
UPF3YGR072W IML3P38265 245 aa2.81□□□□□ -1.96
UPF3YGR072W LSM12P38828 187 aaKnown RBP2.81□□□□□ -1.96
UPF3YGR072W FHL1P39521 936 aa2.81□□□□□ -1.96
UPF3YGR072W YNL320WP42840 284 aa2.81□□□□□ -1.96
UPF3YGR072W LOC1P43586 204 aaPredicted RBP2.81□□□□□ -1.96
UPF3YGR072W YJR085CP47131 105 aaKnown RBP2.81□□□□□ -1.96
UPF3YGR072W BIR1P47134 954 aa2.81□□□□□ -1.96
UPF3YGR072W NAS6P50086 228 aa2.81□□□□□ -1.96
UPF3YGR072W APC4Q04601 652 aa2.81□□□□□ -1.96
UPF3YGR072W RRG8Q06109 277 aa2.81□□□□□ -1.96
UPF3YGR072W YDL109CQ12103 647 aa2.81□□□□□ -1.96
UPF3YGR072W TMS1Q12116 473 aa2.81□□□□□ -1.96
UPF3YGR072W YDL199CQ12407 687 aa2.81□□□□□ -1.96
UPF3YGR072W RAD1P06777 1100 aa2.8□□□□□ -1.96
UPF3YGR072W UTR1P21373 530 aa2.8□□□□□ -1.96
UPF3YGR072W MMS21P38632 267 aa2.8□□□□□ -1.96
UPF3YGR072W ATG7P38862 630 aa2.8□□□□□ -1.96
UPF3YGR072W DFG10P40526 253 aa2.8□□□□□ -1.96
UPF3YGR072W RIB4P50861 169 aaPredicted RBP2.8□□□□□ -1.96
UPF3YGR072W HCH1P53834 153 aa2.8□□□□□ -1.96
UPF3YGR072W VAC14Q06708 880 aa2.8□□□□□ -1.96
UPF3YGR072W DNL4Q08387 944 aaPredicted RBP2.8□□□□□ -1.96
Retrieved 100 of 5,963 RNA–protein pairs in 87.1 ms