RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 ANKEF1Q9NU02 776 aa11.49□□□□□ -0.57
LIG3-203ENST00000585370 SAMM50Q9Y512 469 aa11.49□□□□□ -0.57
LIG3-203ENST00000585370 PCDHA2Q9Y5H9 948 aa11.49□□□□□ -0.57
LIG3-203ENST00000585370 PCDHA10Q9Y5I2 948 aa11.49□□□□□ -0.57
LIG3-203ENST00000585370 ITIH6Q6UXX5 1313 aa11.49□□□□□ -0.57
LIG3-203ENST00000585370 FAM13AO94988 1023 aa11.48□□□□□ -0.57
LIG3-203ENST00000585370 PSAPP07602 524 aa11.48□□□□□ -0.57
LIG3-203ENST00000585370 TGFB3P10600 412 aa11.48□□□□□ -0.57
LIG3-203ENST00000585370 MAPTP10636 758 aaKnown RBP11.48□□□□□ -0.57
LIG3-203ENST00000585370 CYP2C19P33261 490 aa11.48□□□□□ -0.57
LIG3-203ENST00000585370 DNM2P50570 870 aa11.48□□□□□ -0.57
LIG3-203ENST00000585370 TBX2Q13207 712 aaPredicted RBP11.48□□□□□ -0.57
LIG3-203ENST00000585370 EDRF1Q3B7T1 1238 aa11.48□□□□□ -0.57
LIG3-203ENST00000585370 OTUD6AQ7L8S5 288 aa11.48□□□□□ -0.57
LIG3-203ENST00000585370 PPFIBP1Q86W92 1011 aa11.48□□□□□ -0.57
LIG3-203ENST00000585370 IRF2BP1Q8IU81 584 aa11.48□□□□□ -0.57
LIG3-203ENST00000585370 SLC17A8Q8NDX2 589 aa11.48□□□□□ -0.57
LIG3-203ENST00000585370 ZNF830Q96NB3 372 aaPredicted RBP11.48□□□□□ -0.57
LIG3-203ENST00000585370 KCNF1Q9H3M0 494 aa11.48□□□□□ -0.57
LIG3-203ENST00000585370 SEMA6BQ9H3T3 888 aa11.48□□□□□ -0.57
LIG3-203ENST00000585370 RRAGDQ9NQL2 400 aaPredicted RBP11.48□□□□□ -0.57
LIG3-203ENST00000585370 DDX20Q9UHI6 824 aaKnown RBP11.48□□□□□ -0.57
LIG3-203ENST00000585370 KCNG1Q9UIX4 513 aa11.48□□□□□ -0.57
LIG3-203ENST00000585370 IVNS1ABPQ9Y6Y0 642 aa11.48□□□□□ -0.57
LIG3-203ENST00000585370 CDH23Q9H251 3354 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 COL11A1P12107 1806 aaPredicted RBP11.47□□□□□ -0.57
LIG3-203ENST00000585370 UBE4BO95155 1302 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 A0A1W2PQC6 194 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 TRIM49BA6NDI0 452 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 LGALS16A8MUM7 142 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 EIF3DO15371 548 aaKnown RBP eCLIP11.47□□□□□ -0.57
LIG3-203ENST00000585370 CCP110O43303 1012 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 STRNO43815 780 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 COBLO75128 1261 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 SKILP12757 684 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 ERCC3P19447 782 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 EDNRBP24530 442 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 ADORA2AP29274 412 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 CNGA1P29973 690 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 PBX1P40424 430 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 ALDH5A1P51649 535 aaPredicted RBP11.47□□□□□ -0.57
LIG3-203ENST00000585370 ZNF131P52739 623 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 PMS1P54277 932 aaKnown RBP11.47□□□□□ -0.57
LIG3-203ENST00000585370 ALCAMQ13740 583 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 KCTD2Q14681 263 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 NOLC1Q14978 699 aaKnown RBP eCLIP11.47□□□□□ -0.57
LIG3-203ENST00000585370 BMT2Q1RMZ1 405 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 HSP90AA4PQ58FG1 418 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 DPP9Q86TI2 863 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 FAM133AQ8N9E0 248 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 ZNF507Q8TCN5 953 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 PIGOQ8TEQ8 1089 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 ATP6V0A1Q93050 837 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 CCDC51Q96ER9 411 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 ZFP91Q96JP5 570 aaPredicted RBP11.47□□□□□ -0.57
LIG3-203ENST00000585370 REEP2Q9BRK0 252 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 NUP58Q9BVL2 599 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 SENP6Q9GZR1 1112 aaPredicted RBP11.47□□□□□ -0.57
LIG3-203ENST00000585370 ZHX3Q9H4I2 956 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 PARVGQ9HBI0 331 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 KCND1Q9NSA2 647 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 SPTLC3Q9NUV7 552 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 INTS13Q9NVM9 706 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 SLC9A2Q9UBY0 812 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 EYSQ5T1H1 3165 aa11.47□□□□□ -0.57
LIG3-203ENST00000585370 VCANP13611 3396 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 NPHP3-ACAD11A0A0J9YXS1 232 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 DDX39AO00148 427 aaKnown RBP11.46□□□□□ -0.57
LIG3-203ENST00000585370 PDXKO00764 312 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 CALUO43852 315 aaPredicted RBP11.46□□□□□ -0.57
LIG3-203ENST00000585370 ATP9AO75110 1047 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 KCNA2P16389 499 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 RPL13P26373 211 aaKnown RBP11.46□□□□□ -0.57
LIG3-203ENST00000585370 MTIF2P46199 727 aaKnown RBP11.46□□□□□ -0.57
LIG3-203ENST00000585370 UBXN1Q04323 297 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 NEDD9Q14511 834 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 NFIL3Q16649 462 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 KNOP1Q1ED39 458 aaKnown RBP11.46□□□□□ -0.57
LIG3-203ENST00000585370 LRIT3Q3SXY7 679 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 OLFML2BQ68BL8 750 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 MIS18BP1Q6P0N0 1132 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 PADI6Q6TGC4 694 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 EPM2AIP1Q7L775 607 aaPredicted RBP11.46□□□□□ -0.57
LIG3-203ENST00000585370 TDHQ8IZJ6 230 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 MYCT1Q8N699 235 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 RETREG2Q8NC44 543 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 BANK1Q8NDB2 785 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 SCFD1Q8WVM8 642 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 CCDC43Q96MW1 224 aaKnown RBP11.46□□□□□ -0.57
LIG3-203ENST00000585370 PURBQ96QR8 312 aaKnown RBP11.46□□□□□ -0.57
LIG3-203ENST00000585370 PANX2Q96RD6 677 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 MMP19Q99542 508 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 TUBGCP2Q9BSJ2 902 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 RUSC1Q9BVN2 902 aa11.46□□□□□ -0.57
LIG3-203ENST00000585370 NAA15Q9BXJ9 866 aaKnown RBP11.46□□□□□ -0.57
LIG3-203ENST00000585370 UBE2OQ9C0C9 1292 aaKnown RBP11.46□□□□□ -0.57
LIG3-203ENST00000585370 MRPL44Q9H9J2 332 aaKnown RBP11.46□□□□□ -0.57
LIG3-203ENST00000585370 JPH1Q9HDC5 661 aaPredicted RBP11.46□□□□□ -0.57
LIG3-203ENST00000585370 LARSQ9P2J5 1176 aaKnown RBP11.46□□□□□ -0.57
LIG3-203ENST00000585370 TRAF3IP3Q9Y228 551 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms