RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 MYH4Q9Y623 1939 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 GOLGA6L10A0A0M3HER8 536 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 POTEB3A0JP26 581 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 POTECB2RU33 542 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 F8VZ95 297 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 PPP1R11O60927 126 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-232ENST00000557487 GIT2Q14161 759 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 POTEBQ6S5H4 581 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 LRRC47Q8N1G4 583 aaKnown RBP17.72■□□□□ 0.43
SHMT2-232ENST00000557487 TATDN2Q93075 761 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 TLCD1Q96CP7 247 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 CCDC114Q96M63 670 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 PSMD1Q99460 953 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 AP1M1Q9BXS5 423 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 DDX47Q9H0S4 455 aaKnown RBP17.72■□□□□ 0.43
SHMT2-232ENST00000557487 DNM3Q9UQ16 869 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 DAPK3O43293 454 aa17.71■□□□□ 0.43
SHMT2-232ENST00000557487 TMEM253P0C7T8 217 aa17.71■□□□□ 0.43
SHMT2-232ENST00000557487 ACTN1P12814 892 aa17.71■□□□□ 0.43
SHMT2-232ENST00000557487 RPA1P27694 616 aa17.71■□□□□ 0.43
SHMT2-232ENST00000557487 DRG2P55039 364 aaKnown RBP17.71■□□□□ 0.43
SHMT2-232ENST00000557487 POU5F1Q01860 360 aaKnown RBP17.71■□□□□ 0.43
SHMT2-232ENST00000557487 NFIXQ14938 502 aa17.71■□□□□ 0.43
SHMT2-232ENST00000557487 DAAM2Q86T65 1068 aa17.71■□□□□ 0.43
SHMT2-232ENST00000557487 RBM46Q8TBY0 533 aaKnown RBP17.71■□□□□ 0.43
SHMT2-232ENST00000557487 RFFLQ8WZ73 363 aa17.71■□□□□ 0.43
SHMT2-232ENST00000557487 SEC16BQ96JE7 1060 aa17.71■□□□□ 0.43
SHMT2-232ENST00000557487 TXLNGYQ9BZA5 131 aa17.71■□□□□ 0.43
SHMT2-232ENST00000557487 CARD9Q9H257 536 aa17.71■□□□□ 0.43
SHMT2-232ENST00000557487 KDM4CQ9H3R0 1056 aa17.71■□□□□ 0.43
SHMT2-232ENST00000557487 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.71■□□□□ 0.43
SHMT2-232ENST00000557487 SUGT1Q9Y2Z0 365 aa17.71■□□□□ 0.43
SHMT2-232ENST00000557487 POLRMTO00411 1230 aaKnown RBP17.7■□□□□ 0.42
SHMT2-232ENST00000557487 PPP1R12BO60237 982 aaPredicted RBP17.7■□□□□ 0.42
SHMT2-232ENST00000557487 NUDT17P0C025 328 aa17.7■□□□□ 0.42
SHMT2-232ENST00000557487 HSPA6P17066 643 aa17.7■□□□□ 0.42
SHMT2-232ENST00000557487 PTENP60484 403 aa17.7■□□□□ 0.42
SHMT2-232ENST00000557487 BYSLQ13895 437 aaKnown RBP17.7■□□□□ 0.42
SHMT2-232ENST00000557487 DHX34Q14147 1143 aaKnown RBP17.7■□□□□ 0.42
SHMT2-232ENST00000557487 KRT71Q3SY84 523 aa17.7■□□□□ 0.42
SHMT2-232ENST00000557487 FMO2Q99518 471 aa17.7■□□□□ 0.42
SHMT2-232ENST00000557487 NEUROG2Q9H2A3 272 aa17.7■□□□□ 0.42
SHMT2-232ENST00000557487 SLC40A1Q9NP59 571 aa17.7■□□□□ 0.42
SHMT2-232ENST00000557487 SIX2Q9NPC8 291 aa17.7■□□□□ 0.42
SHMT2-232ENST00000557487 AMACRQ9UHK6 382 aa17.7■□□□□ 0.42
SHMT2-232ENST00000557487 NOVA2Q9UNW9 492 aaKnown RBP17.7■□□□□ 0.42
SHMT2-232ENST00000557487 DDX3XO00571 662 aaKnown RBP eCLIP17.7■□□□□ 0.428e-15■■□□□ 14.3
SHMT2-232ENST00000557487 MED24O75448 989 aa17.7■□□□□ 0.42
SHMT2-232ENST00000557487 NR3C1P04150 777 aa17.7■□□□□ 0.42
SHMT2-232ENST00000557487 AKR1B1P15121 316 aa17.7■□□□□ 0.42
SHMT2-232ENST00000557487 GAP43P17677 238 aa17.7■□□□□ 0.42
SHMT2-232ENST00000557487 DHX9Q08211 1270 aaKnown RBP17.7■□□□□ 0.42
SHMT2-232ENST00000557487 ANKRD20A8PQ5CZ79 823 aa17.7■□□□□ 0.42
SHMT2-232ENST00000557487 DPP8Q6V1X1 898 aaPredicted RBP17.7■□□□□ 0.42
SHMT2-232ENST00000557487 DDX42Q86XP3 938 aaKnown RBP eCLIP17.7■□□□□ 0.42
SHMT2-232ENST00000557487 SLC30A5Q8TAD4 765 aa17.7■□□□□ 0.42
SHMT2-232ENST00000557487 RAPGEF5Q92565 580 aa17.7■□□□□ 0.42
SHMT2-232ENST00000557487 NPHP3-ACAD11A0A0J9YXS1 232 aa17.69■□□□□ 0.42
SHMT2-232ENST00000557487 EIF3DO15371 548 aaKnown RBP eCLIP17.69■□□□□ 0.42
SHMT2-232ENST00000557487 Q4G0T1 1027 aa17.69■□□□□ 0.42
SHMT2-232ENST00000557487 MFSD14BQ5SR56 506 aa17.69■□□□□ 0.42
SHMT2-232ENST00000557487 OR2W6PQ8NHA6 318 aa17.69■□□□□ 0.42
SHMT2-232ENST00000557487 SLC35C1Q96A29 364 aa17.69■□□□□ 0.42
SHMT2-232ENST00000557487 PGM2Q96G03 612 aa17.69■□□□□ 0.42
SHMT2-232ENST00000557487 FAM20AQ96MK3 541 aa17.69■□□□□ 0.42
SHMT2-232ENST00000557487 MKNK1Q9BUB5 465 aa17.69■□□□□ 0.42
SHMT2-232ENST00000557487 ANO3Q9BYT9 981 aa17.69■□□□□ 0.42
SHMT2-232ENST00000557487 ZHX3Q9H4I2 956 aa17.69■□□□□ 0.42
SHMT2-232ENST00000557487 KANSL2Q9H9L4 492 aa17.69■□□□□ 0.42
SHMT2-232ENST00000557487 GCNT4Q9P109 453 aa17.69■□□□□ 0.42
SHMT2-232ENST00000557487 BCCIPQ9P287 314 aaKnown RBP eCLIP17.69■□□□□ 0.42
SHMT2-232ENST00000557487 RASAL2Q9UJF2 1139 aa17.69■□□□□ 0.42
SHMT2-232ENST00000557487 GGA1Q9UJY5 639 aa17.69■□□□□ 0.42
SHMT2-232ENST00000557487 CCDC169A6NNP5 214 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 TTI1O43156 1089 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 MAGOHP61326 146 aaKnown RBP17.68■□□□□ 0.42
SHMT2-232ENST00000557487 NBPF9Q3BBW0 867 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 PREPLQ4J6C6 727 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-232ENST00000557487 SFR1Q86XK3 245 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 MAGOHBQ96A72 148 aaKnown RBP17.68■□□□□ 0.42
SHMT2-232ENST00000557487 CHMP6Q96FZ7 201 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 SGSM3Q96HU1 749 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 STK33Q9BYT3 514 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 OLFML3Q9NRN5 406 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 ARFGEF1Q9Y6D6 1849 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 DNAJC8O75937 253 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-232ENST00000557487 AKAP3O75969 853 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 UFL1O94874 794 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 RFX1P22670 979 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 SOX5P35711 763 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 GALCP54803 685 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 SPIRE1Q08AE8 756 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 XRCC4Q13426 336 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 NEDD9Q14511 834 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 SNCBQ16143 134 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 DCAF17Q5H9S7 520 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-232ENST00000557487 ERMARDQ5T6L9 678 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 CPLX4Q7Z7G2 160 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 CATSPER3Q86XQ3 398 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 TEX2Q8IWB9 1127 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms