RNA–Protein interactions for RNA: ENST00000556310.1

SLIRP-205, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-205ENST00000556310 MYO9BQ13459 2157 aa12.97□□□□□ -0.33
SLIRP-205ENST00000556310 COL6A3P12111 3177 aa12.97□□□□□ -0.33
SLIRP-205ENST00000556310 EML1O00423 815 aa12.96□□□□□ -0.33
SLIRP-205ENST00000556310 WNT7AO00755 349 aa12.96□□□□□ -0.33
SLIRP-205ENST00000556310 MAGEB2O15479 319 aa12.96□□□□□ -0.33
SLIRP-205ENST00000556310 PSMC5P62195 406 aa12.96□□□□□ -0.33
SLIRP-205ENST00000556310 SPIRE1Q08AE8 756 aa12.96□□□□□ -0.33
SLIRP-205ENST00000556310 ORC2Q13416 577 aaPredicted RBP12.96□□□□□ -0.33
SLIRP-205ENST00000556310 GNL2Q13823 731 aaKnown RBP12.96□□□□□ -0.33
SLIRP-205ENST00000556310 LPIN1Q14693 890 aa12.96□□□□□ -0.33
SLIRP-205ENST00000556310 CALCRLQ16602 461 aa12.96□□□□□ -0.33
SLIRP-205ENST00000556310 XKR3Q5GH77 459 aa12.96□□□□□ -0.33
SLIRP-205ENST00000556310 TRMT1LQ7Z2T5 733 aaKnown RBP12.96□□□□□ -0.33
SLIRP-205ENST00000556310 NOSTRINQ8IVI9 506 aa12.96□□□□□ -0.33
SLIRP-205ENST00000556310 KIAA0319LQ8IZA0 1049 aa12.96□□□□□ -0.33
SLIRP-205ENST00000556310 USP38Q8NB14 1042 aa12.96□□□□□ -0.33
SLIRP-205ENST00000556310 NKX2-4Q9H2Z4 354 aa12.96□□□□□ -0.33
SLIRP-205ENST00000556310 ZNF576Q9H609 170 aa12.96□□□□□ -0.33
SLIRP-205ENST00000556310 SEPT9Q9UHD8 586 aaPredicted RBP12.96□□□□□ -0.33
SLIRP-205ENST00000556310 STXBP5LQ9Y2K9 1186 aa12.96□□□□□ -0.33
SLIRP-205ENST00000556310 COL4A6Q14031 1691 aa12.96□□□□□ -0.34
SLIRP-205ENST00000556310 KIF28PB7ZC32 967 aa12.95□□□□□ -0.34
SLIRP-205ENST00000556310 DKC1O60832 514 aaKnown RBP eCLIP12.95□□□□□ -0.34
SLIRP-205ENST00000556310 AMHP03971 560 aa12.95□□□□□ -0.34
SLIRP-205ENST00000556310 QARSP47897 775 aaKnown RBP12.95□□□□□ -0.34
SLIRP-205ENST00000556310 TRAPPC10P48553 1259 aa12.95□□□□□ -0.34
SLIRP-205ENST00000556310 TMEM62Q0P6H9 643 aa12.95□□□□□ -0.34
SLIRP-205ENST00000556310 EPHA7Q15375 998 aa12.95□□□□□ -0.34
SLIRP-205ENST00000556310 TARBP2Q15633 366 aaKnown RBP12.95□□□□□ -0.34
SLIRP-205ENST00000556310 NCAPH2Q6IBW4 605 aa12.95□□□□□ -0.34
SLIRP-205ENST00000556310 LINC01465Q8N7H1 131 aa12.95□□□□□ -0.34
SLIRP-205ENST00000556310 BANK1Q8NDB2 785 aa12.95□□□□□ -0.34
SLIRP-205ENST00000556310 NIFKQ9BYG3 293 aaKnown RBP12.95□□□□□ -0.34
SLIRP-205ENST00000556310 CELF4Q9BZC1 486 aaKnown RBP12.95□□□□□ -0.34
SLIRP-205ENST00000556310 SLC28A3Q9HAS3 691 aa12.95□□□□□ -0.34
SLIRP-205ENST00000556310 COL4A4P53420 1690 aaPredicted RBP12.95□□□□□ -0.34
SLIRP-205ENST00000556310 RBAK-RBAKDNI3L0D1 243 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 TLL1O43897 1013 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 STBD1O95210 358 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 GJB5O95377 273 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 P4HBP07237 508 aaKnown RBP12.94□□□□□ -0.34
SLIRP-205ENST00000556310 CA3P07451 260 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 MYOGP15173 224 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 ATP2B1P20020 1258 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 U2AF2P26368 475 aaKnown RBP eCLIP12.94□□□□□ -0.341e-7■□□□□ 8
SLIRP-205ENST00000556310 GJB2P29033 226 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 MCM7P33993 719 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 CLCN3P51790 818 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 TBC1D8BQ0IIM8 1120 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 PPP2R2DQ66LE6 453 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.94□□□□□ -0.34
SLIRP-205ENST00000556310 METTL13Q8N6R0 699 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 MTMR9Q96QG7 549 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 MAP7D2Q96T17 732 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 CDX2Q99626 313 aaPredicted RBP12.94□□□□□ -0.34
SLIRP-205ENST00000556310 LXNQ9BS40 222 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 AGO3Q9H9G7 860 aaKnown RBP12.94□□□□□ -0.34
SLIRP-205ENST00000556310 NOL7Q9UMY1 257 aaKnown RBP12.94□□□□□ -0.34
SLIRP-205ENST00000556310 PCDHA12Q9UN75 941 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.94□□□□□ -0.34
SLIRP-205ENST00000556310 TTC3P53804 2025 aa12.94□□□□□ -0.34
SLIRP-205ENST00000556310 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.93□□□□□ -0.34
SLIRP-205ENST00000556310 TMEM150BA6NC51 233 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 TMOD1P28289 359 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 CD52P31358 61 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 PAK2Q13177 524 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 GRIN2CQ14957 1233 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 MTERF2Q49AM1 385 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 TTC38Q5R3I4 469 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 EFCAB12Q6NXP0 572 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 ANO5Q75V66 913 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 TMCO2Q7Z6W1 182 aaPredicted RBP12.93□□□□□ -0.34
SLIRP-205ENST00000556310 C4orf19Q8IY42 314 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 MYOCDQ8IZQ8 938 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 ZNF710Q8N1W2 664 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 NEK9Q8TD19 979 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 CEP89Q96ST8 783 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 ZBED2Q9BTP6 218 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 TMEM60Q9H2L4 133 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 TTC12Q9H892 705 aaPredicted RBP12.93□□□□□ -0.34
SLIRP-205ENST00000556310 SMC3Q9UQE7 1217 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 PPME1Q9Y570 386 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 NLRC5Q86WI3 1866 aa12.93□□□□□ -0.34
SLIRP-205ENST00000556310 DDX11L8A8MPP1 907 aa12.92□□□□□ -0.34
SLIRP-205ENST00000556310 VTNP04004 478 aa12.92□□□□□ -0.34
SLIRP-205ENST00000556310 OR52Z1P0C646 297 aa12.92□□□□□ -0.34
SLIRP-205ENST00000556310 TXKP42681 527 aa12.92□□□□□ -0.34
SLIRP-205ENST00000556310 CRYBB1P53674 252 aaPredicted RBP12.92□□□□□ -0.34
SLIRP-205ENST00000556310 CUL4AQ13619 759 aa12.92□□□□□ -0.34
SLIRP-205ENST00000556310 KIZQ2M2Z5 673 aa12.92□□□□□ -0.34
SLIRP-205ENST00000556310 RALGAPA2Q2PPJ7 1873 aa12.92□□□□□ -0.34
SLIRP-205ENST00000556310 PLA2G4FQ68DD2 849 aa12.92□□□□□ -0.34
SLIRP-205ENST00000556310 FAM43BQ6ZT52 329 aaPredicted RBP12.92□□□□□ -0.34
SLIRP-205ENST00000556310 LRRC71Q8N4P6 559 aa12.92□□□□□ -0.34
SLIRP-205ENST00000556310 MYLIPQ8WY64 445 aa12.92□□□□□ -0.34
SLIRP-205ENST00000556310 DYDC2Q96IM9 177 aa12.92□□□□□ -0.34
SLIRP-205ENST00000556310 RAD9AQ99638 391 aa12.92□□□□□ -0.34
SLIRP-205ENST00000556310 FTHL17Q9BXU8 183 aa12.92□□□□□ -0.34
SLIRP-205ENST00000556310 ZSWIM4Q9H7M6 989 aa12.92□□□□□ -0.34
SLIRP-205ENST00000556310 RGL1Q9NZL6 768 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms