RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, human

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC4-216	ENST00000544989	TARBP2	Q15633	366 aa	Known RBP	13.24	□□□□□ -0.29
HDAC4-216	ENST00000544989	UGCG	Q16739	394 aa		13.24	□□□□□ -0.29
HDAC4-216	ENST00000544989	NCAPH2	Q6IBW4	605 aa		13.24	□□□□□ -0.29
HDAC4-216	ENST00000544989	NOSTRIN	Q8IVI9	506 aa		13.24	□□□□□ -0.29
HDAC4-216	ENST00000544989	C4orf19	Q8IY42	314 aa		13.24	□□□□□ -0.29
HDAC4-216	ENST00000544989	LINC01465	Q8N7H1	131 aa		13.24	□□□□□ -0.29
HDAC4-216	ENST00000544989	BANK1	Q8NDB2	785 aa		13.24	□□□□□ -0.29
HDAC4-216	ENST00000544989	SP7	Q8TDD2	431 aa	Predicted RBP	13.24	□□□□□ -0.29
HDAC4-216	ENST00000544989	SLC7A3	Q8WY07	619 aa		13.24	□□□□□ -0.29
HDAC4-216	ENST00000544989	ZBTB10	Q96DT7	871 aa		13.24	□□□□□ -0.29
HDAC4-216	ENST00000544989	ZSWIM4	Q9H7M6	989 aa		13.24	□□□□□ -0.29
HDAC4-216	ENST00000544989	C1orf112	Q9NSG2	853 aa		13.24	□□□□□ -0.29
HDAC4-216	ENST00000544989	LMCD1	Q9NZU5	365 aa		13.24	□□□□□ -0.29
HDAC4-216	ENST00000544989	GINS2	Q9Y248	185 aa		13.24	□□□□□ -0.29
HDAC4-216	ENST00000544989	LINC01553	A4QN01	128 aa		13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	GPR32	O75388	356 aa		13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	UPP2	O95045	317 aa		13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	IGFBP4	P22692	258 aa		13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	RFC5	P40937	340 aa		13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	CLCN3	P51790	818 aa		13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	KIZ	Q2M2Z5	673 aa		13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	MTERF2	Q49AM1	385 aa		13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	FAM117B	Q6P1L5	589 aa		13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	NPAS4	Q8IUM7	802 aa		13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	ARNTL2	Q8WYA1	636 aa		13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	TMX3	Q96JJ7	454 aa		13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	SCLT1	Q96NL6	688 aa		13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	LXN	Q9BS40	222 aa		13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	INO80B	Q9C086	356 aa	Predicted RBP	13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	AGO3	Q9H9G7	860 aa	Known RBP	13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	SUGCT	Q9HAC7	445 aa		13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	COL4A6	Q14031	1691 aa		13.23	□□□□□ -0.29
HDAC4-216	ENST00000544989	EVPL	Q92817	2033 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	WDR81	Q562E7	1941 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	IGKV6-21	A0A0C4DH24	114 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	DENND3	A2RUS2	1198 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	FAM205C	A6NFA0	338 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	EML1	O00423	815 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	DTNB	O60941	627 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	MAF	O75444	373 aa	Predicted RBP	13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	VTN	P04004	478 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	EIF4B	P23588	611 aa	Known RBP	13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	U2AF2	P26368	475 aa	Known RBP eCLIP	13.22	□□□□□ -0.29	3e-6	■■■□□ 15.4
HDAC4-216	ENST00000544989	NLRP11	P59045	1033 aa	Known RBP	13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	GUCY1B3	Q02153	619 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	SPIRE1	Q08AE8	756 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	NFX1	Q12986	1120 aa	Known RBP	13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	ZNF410	Q86VK4	478 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	CEP170P1	Q96L14	293 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	MTMR9	Q96QG7	549 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	OSMR	Q99650	979 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	OSBPL7	Q9BZF2	842 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	TTC12	Q9H892	705 aa	Predicted RBP	13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	ERVK-5	Q9HDB9	667 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	CYP26B1	Q9NR63	512 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	LRFN2	Q9ULH4	789 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	STK24	Q9Y6E0	443 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	TTC3	P53804	2025 aa		13.22	□□□□□ -0.29
HDAC4-216	ENST00000544989	LCHN	A4D1U4	455 aa		13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	STBD1	O95210	358 aa		13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	LYPLA2	O95372	231 aa		13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	ZSCAN20	P17040	1043 aa	Predicted RBP	13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	YWHAB	P31946	246 aa	Known RBP	13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	MCM7	P33993	719 aa		13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	TXK	P42681	527 aa		13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	SARS	P49591	514 aa	Known RBP	13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	GPC3	P51654	580 aa		13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	TMEM266	Q2M3C6	531 aa		13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	SLC24A5	Q71RS6	500 aa		13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	ANO5	Q75V66	913 aa		13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	TMCO2	Q7Z6W1	182 aa	Predicted RBP	13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	LRRC71	Q8N4P6	559 aa		13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	FIBCD1	Q8N539	461 aa		13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	ERMN	Q8TAM6	284 aa		13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	TCP11	Q8WWU5	503 aa		13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	NLRP7	Q8WX94	980 aa		13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	CCDC43	Q96MW1	224 aa	Known RBP	13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	CEP89	Q96ST8	783 aa		13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	GCOM2	Q9BZD3	368 aa	Predicted RBP	13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	ADAMTS10	Q9H324	1103 aa		13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	ST3GAL5	Q9UNP4	418 aa		13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	NOC2L	Q9Y3T9	749 aa	Known RBP	13.21	□□□□□ -0.29
HDAC4-216	ENST00000544989	SI	P14410	1827 aa		13.2	□□□□□ -0.3
HDAC4-216	ENST00000544989	ADGRA3	Q8IWK6	1321 aa		13.2	□□□□□ -0.3
HDAC4-216	ENST00000544989	PTPRS	Q13332	1948 aa		13.2	□□□□□ -0.3
HDAC4-216	ENST00000544989	TNFRSF10A	O00220	468 aa		13.2	□□□□□ -0.3
HDAC4-216	ENST00000544989	LAD1	O00515	517 aa		13.2	□□□□□ -0.3
HDAC4-216	ENST00000544989	ASAP2	O43150	1006 aa		13.2	□□□□□ -0.3
HDAC4-216	ENST00000544989	HOXA2	O43364	376 aa		13.2	□□□□□ -0.3
HDAC4-216	ENST00000544989	RB1	P06400	928 aa		13.2	□□□□□ -0.3
HDAC4-216	ENST00000544989	OR52Z1	P0C646	297 aa		13.2	□□□□□ -0.3
HDAC4-216	ENST00000544989	XRCC6	P12956	609 aa	Known RBP eCLIP	13.2	□□□□□ -0.3
HDAC4-216	ENST00000544989	DARS	P14868	501 aa	Known RBP	13.2	□□□□□ -0.3
HDAC4-216	ENST00000544989	ATP2B1	P20020	1258 aa		13.2	□□□□□ -0.3
HDAC4-216	ENST00000544989	MUT	P22033	750 aa		13.2	□□□□□ -0.3
HDAC4-216	ENST00000544989	SFPQ	P23246	707 aa	Known RBP eCLIP	13.2	□□□□□ -0.3	2e-6	■■■□□ 18.5
HDAC4-216	ENST00000544989	POLG	P54098	1239 aa	Predicted RBP	13.2	□□□□□ -0.3
HDAC4-216	ENST00000544989	ADGRE1	Q14246	886 aa		13.2	□□□□□ -0.3
HDAC4-216	ENST00000544989	PTPRO	Q16827	1216 aa		13.2	□□□□□ -0.3

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