RNA–Protein interactions for RNA: ENST00000542337.5

DDB1-220, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 3

Gene DDB1, Length 558 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-220ENST00000542337 SIP14410 1827 aa22.78■■□□□ 1.24
DDB1-220ENST00000542337 ZNF862O60290 1169 aa22.78■■□□□ 1.24
DDB1-220ENST00000542337 GCFC2P16383 781 aaKnown RBP22.78■■□□□ 1.24
DDB1-220ENST00000542337 CLCN3P51790 818 aa22.78■■□□□ 1.24
DDB1-220ENST00000542337 NPY5RQ15761 445 aa22.78■■□□□ 1.24
DDB1-220ENST00000542337 XKR3Q5GH77 459 aa22.78■■□□□ 1.24
DDB1-220ENST00000542337 SLC24A5Q71RS6 500 aa22.78■■□□□ 1.24
DDB1-220ENST00000542337 GJA10Q969M2 543 aa22.78■■□□□ 1.24
DDB1-220ENST00000542337 FAM20AQ96MK3 541 aa22.78■■□□□ 1.24
DDB1-220ENST00000542337 SCLT1Q96NL6 688 aa22.78■■□□□ 1.24
DDB1-220ENST00000542337 NSUN3Q9H649 340 aaKnown RBP22.78■■□□□ 1.24
DDB1-220ENST00000542337 RGS18Q9NS28 235 aa22.78■■□□□ 1.24
DDB1-220ENST00000542337 COL4A4P53420 1690 aaPredicted RBP22.77■■□□□ 1.24
DDB1-220ENST00000542337 GPR32O75388 356 aa22.77■■□□□ 1.24
DDB1-220ENST00000542337 NLRP11P59045 1033 aaKnown RBP22.77■■□□□ 1.24
DDB1-220ENST00000542337 CDC42EP1Q00587 391 aa22.77■■□□□ 1.24
DDB1-220ENST00000542337 NAALADL2Q58DX5 795 aa22.77■■□□□ 1.24
DDB1-220ENST00000542337 LRRC71Q8N4P6 559 aa22.77■■□□□ 1.24
DDB1-220ENST00000542337 ETNPPLQ8TBG4 499 aa22.77■■□□□ 1.24
DDB1-220ENST00000542337 TMEM40Q8WWA1 233 aa22.77■■□□□ 1.24
DDB1-220ENST00000542337 SEPT9Q9UHD8 586 aaPredicted RBP22.77■■□□□ 1.24
DDB1-220ENST00000542337 NCK2O43639 380 aa22.76■■□□□ 1.23
DDB1-220ENST00000542337 DKC1O60832 514 aaKnown RBP eCLIP22.76■■□□□ 1.23
DDB1-220ENST00000542337 ZSCAN20P17040 1043 aaPredicted RBP22.76■■□□□ 1.23
DDB1-220ENST00000542337 DNM2P50570 870 aa22.76■■□□□ 1.23
DDB1-220ENST00000542337 NEK4P51957 841 aa22.76■■□□□ 1.23
DDB1-220ENST00000542337 UGCGQ16739 394 aa22.76■■□□□ 1.23
DDB1-220ENST00000542337 PAN2Q504Q3 1202 aaKnown RBP22.76■■□□□ 1.23
DDB1-220ENST00000542337 PPP4R3AQ6IN85 833 aa22.76■■□□□ 1.23
DDB1-220ENST00000542337 PIK3AP1Q6ZUJ8 805 aa22.76■■□□□ 1.23
DDB1-220ENST00000542337 CRIPAKQ8N1N5 446 aa22.76■■□□□ 1.23
DDB1-220ENST00000542337 NIFKQ9BYG3 293 aaKnown RBP22.76■■□□□ 1.23
DDB1-220ENST00000542337 MRPL42Q9Y6G3 142 aaKnown RBP22.76■■□□□ 1.23
DDB1-220ENST00000542337 SPTBN5Q9NRC6 3674 aaKnown RBP22.75■■□□□ 1.23
DDB1-220ENST00000542337 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.75■■□□□ 1.23
DDB1-220ENST00000542337 DDX11L8A8MPP1 907 aa22.75■■□□□ 1.23
DDB1-220ENST00000542337 CCNT1O60563 726 aaKnown RBP22.75■■□□□ 1.23
DDB1-220ENST00000542337 KCNA5P22460 613 aa22.75■■□□□ 1.23
DDB1-220ENST00000542337 EIF4BP23588 611 aaKnown RBP22.75■■□□□ 1.23
DDB1-220ENST00000542337 SPOUT1Q5T280 376 aaKnown RBP22.75■■□□□ 1.23
DDB1-220ENST00000542337 FAM228AQ86W67 206 aa22.75■■□□□ 1.23
DDB1-220ENST00000542337 NECAB1Q8N987 351 aa22.75■■□□□ 1.23
DDB1-220ENST00000542337 ATP6V0A4Q9HBG4 840 aa22.75■■□□□ 1.23
DDB1-220ENST00000542337 AAASQ9NRG9 546 aa22.75■■□□□ 1.23
DDB1-220ENST00000542337 TTC3P53804 2025 aa22.75■■□□□ 1.23
DDB1-220ENST00000542337 REV3LO60673 3130 aa22.74■■□□□ 1.23
DDB1-220ENST00000542337 MGEA5O60502 916 aa22.74■■□□□ 1.23
DDB1-220ENST00000542337 BAG4O95429 457 aaKnown RBP22.74■■□□□ 1.23
DDB1-220ENST00000542337 CTDNEP1O95476 244 aa22.74■■□□□ 1.23
DDB1-220ENST00000542337 KRT2P35908 639 aa22.74■■□□□ 1.23
DDB1-220ENST00000542337 PSMC5P62195 406 aa22.74■■□□□ 1.23
DDB1-220ENST00000542337 TRIM29Q14134 588 aa22.74■■□□□ 1.23
DDB1-220ENST00000542337 MTERF2Q49AM1 385 aa22.74■■□□□ 1.23
DDB1-220ENST00000542337 TCEAL5Q5H9L2 206 aa22.74■■□□□ 1.23
DDB1-220ENST00000542337 B3GNT9Q6UX72 402 aa22.74■■□□□ 1.23
DDB1-220ENST00000542337 EP400NLQ6ZTU2 488 aa22.74■■□□□ 1.23
DDB1-220ENST00000542337 LINC01465Q8N7H1 131 aa22.74■■□□□ 1.23
DDB1-220ENST00000542337 NLRP7Q8WX94 980 aa22.74■■□□□ 1.23
DDB1-220ENST00000542337 P2RX5Q93086 422 aa22.74■■□□□ 1.23
DDB1-220ENST00000542337 GTF3C6Q969F1 213 aa22.74■■□□□ 1.23
DDB1-220ENST00000542337 NECAB3Q96P71 396 aaPredicted RBP22.74■■□□□ 1.23
DDB1-220ENST00000542337 JPH2Q9BR39 696 aaPredicted RBP22.74■■□□□ 1.23
DDB1-220ENST00000542337 ADAMTS10Q9H324 1103 aa22.74■■□□□ 1.23
DDB1-220ENST00000542337 TBX3O15119 743 aa22.73■■□□□ 1.23
DDB1-220ENST00000542337 GRM6O15303 877 aa22.73■■□□□ 1.23
DDB1-220ENST00000542337 SLC37A4O43826 429 aa22.73■■□□□ 1.23
DDB1-220ENST00000542337 LINC00271P0C7V0 271 aa22.73■■□□□ 1.23
DDB1-220ENST00000542337 TARBP2Q15633 366 aaKnown RBP22.73■■□□□ 1.23
DDB1-220ENST00000542337 ME3Q16798 604 aa22.73■■□□□ 1.23
DDB1-220ENST00000542337 PUS10Q3MIT2 529 aaKnown RBP22.73■■□□□ 1.23
DDB1-220ENST00000542337 LEXMQ3ZCV2 418 aa22.73■■□□□ 1.23
DDB1-220ENST00000542337 PPP2R3CQ969Q6 453 aa22.73■■□□□ 1.23
DDB1-220ENST00000542337 PLAGL2Q9UPG8 496 aa22.73■■□□□ 1.23
DDB1-220ENST00000542337 PCDHB12Q9Y5F1 795 aa22.73■■□□□ 1.23
DDB1-220ENST00000542337 XIRP2A4UGR9 3374 aa22.73■■□□□ 1.23
DDB1-220ENST00000542337 MYH9P35579 1960 aaKnown RBP22.72■■□□□ 1.23
DDB1-220ENST00000542337 TBKBP1A7MCY6 615 aa22.72■■□□□ 1.23
DDB1-220ENST00000542337 C9IYK1 514 aa22.72■■□□□ 1.23
DDB1-220ENST00000542337 FAM189BP81408 668 aa22.72■■□□□ 1.23
DDB1-220ENST00000542337 PPP2R5CQ13362 524 aa22.72■■□□□ 1.23
DDB1-220ENST00000542337 OXER1Q8TDS5 423 aa22.72■■□□□ 1.23
DDB1-220ENST00000542337 PABPC5Q96DU9 382 aaKnown RBP22.72■■□□□ 1.23
DDB1-220ENST00000542337 GCOM2Q9BZD3 368 aaPredicted RBP22.72■■□□□ 1.23
DDB1-220ENST00000542337 ELAC1Q9H777 363 aaKnown RBP22.72■■□□□ 1.23
DDB1-220ENST00000542337 ALG13Q9NP73 1137 aaKnown RBP22.72■■□□□ 1.23
DDB1-220ENST00000542337 KCNMB3Q9NPA1 279 aa22.72■■□□□ 1.23
DDB1-220ENST00000542337 GJB4Q9NTQ9 266 aa22.72■■□□□ 1.23
DDB1-220ENST00000542337 TMEM161AQ9NX61 479 aa22.72■■□□□ 1.23
DDB1-220ENST00000542337 HOXA2O43364 376 aa22.71■■□□□ 1.23
DDB1-220ENST00000542337 MMP1P03956 469 aa22.71■■□□□ 1.23
DDB1-220ENST00000542337 QARSP47897 775 aaKnown RBP22.71■■□□□ 1.23
DDB1-220ENST00000542337 GPC3P51654 580 aa22.71■■□□□ 1.23
DDB1-220ENST00000542337 EXOC8Q8IYI6 725 aa22.71■■□□□ 1.23
DDB1-220ENST00000542337 SLFN12Q8IYM2 578 aa22.71■■□□□ 1.23
DDB1-220ENST00000542337 FAM50BQ9Y247 325 aa22.71■■□□□ 1.23
DDB1-220ENST00000542337 P4HBP07237 508 aaKnown RBP22.7■■□□□ 1.22
DDB1-220ENST00000542337 DARSP14868 501 aaKnown RBP22.7■■□□□ 1.22
DDB1-220ENST00000542337 GATMP50440 423 aa22.7■■□□□ 1.22
DDB1-220ENST00000542337 DSC3Q14574 896 aa22.7■■□□□ 1.22
DDB1-220ENST00000542337 KLHL23Q8NBE8 558 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms