RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PCDHA4Q9UN74 947 aa16.64■□□□□ 0.25
VPS28-215ENST00000531924 HCN4Q9Y3Q4 1203 aa16.64■□□□□ 0.25
VPS28-215ENST00000531924 MSH4O15457 936 aa16.63■□□□□ 0.25
VPS28-215ENST00000531924 DEXIO95424 95 aa16.63■□□□□ 0.25
VPS28-215ENST00000531924 ALADP13716 330 aa16.63■□□□□ 0.25
VPS28-215ENST00000531924 ZSCAN20P17040 1043 aaPredicted RBP16.63■□□□□ 0.25
VPS28-215ENST00000531924 NDUFV1P49821 464 aa16.63■□□□□ 0.25
VPS28-215ENST00000531924 CLCN3P51790 818 aa16.63■□□□□ 0.25
VPS28-215ENST00000531924 NLRP11P59045 1033 aaKnown RBP16.63■□□□□ 0.25
VPS28-215ENST00000531924 STK3Q13188 491 aa16.63■□□□□ 0.25
VPS28-215ENST00000531924 COL19A1Q14993 1142 aa16.63■□□□□ 0.25
VPS28-215ENST00000531924 CRIPAKQ8N1N5 446 aa16.63■□□□□ 0.25
VPS28-215ENST00000531924 TBCKQ8TEA7 893 aa16.63■□□□□ 0.25
VPS28-215ENST00000531924 TMEM40Q8WWA1 233 aa16.63■□□□□ 0.25
VPS28-215ENST00000531924 LENG9Q96B70 501 aa16.63■□□□□ 0.25
VPS28-215ENST00000531924 ZNF274Q96GC6 653 aaPredicted RBP16.63■□□□□ 0.25
VPS28-215ENST00000531924 LRFN3Q9BTN0 628 aa16.63■□□□□ 0.25
VPS28-215ENST00000531924 CD320Q9NPF0 282 aa16.63■□□□□ 0.25
VPS28-215ENST00000531924 PRKAG3Q9UGI9 489 aa16.63■□□□□ 0.25
VPS28-215ENST00000531924 RALGAPA2Q2PPJ7 1873 aa16.63■□□□□ 0.25
VPS28-215ENST00000531924 PI4K2BG5E9Z4 385 aa16.62■□□□□ 0.25
VPS28-215ENST00000531924 MGEA5O60502 916 aa16.62■□□□□ 0.25
VPS28-215ENST00000531924 ITGB1P05556 798 aa16.62■□□□□ 0.25
VPS28-215ENST00000531924 PRKCEQ02156 737 aa16.62■□□□□ 0.25
VPS28-215ENST00000531924 TBC1D8BQ0IIM8 1120 aa16.62■□□□□ 0.25
VPS28-215ENST00000531924 TOB2Q14106 344 aaPredicted RBP16.62■□□□□ 0.25
VPS28-215ENST00000531924 MIER3Q7Z3K6 550 aa16.62■□□□□ 0.25
VPS28-215ENST00000531924 FAM228AQ86W67 206 aa16.62■□□□□ 0.25
VPS28-215ENST00000531924 ABI1Q8IZP0 508 aa16.62■□□□□ 0.25
VPS28-215ENST00000531924 BLIDQ8IZY5 108 aa16.62■□□□□ 0.25
VPS28-215ENST00000531924 LRRC71Q8N4P6 559 aa16.62■□□□□ 0.25
VPS28-215ENST00000531924 SPPL3Q8TCT6 385 aa16.62■□□□□ 0.25
VPS28-215ENST00000531924 POF1BQ8WVV4 589 aa16.62■□□□□ 0.25
VPS28-215ENST00000531924 SLC5A5Q92911 643 aa16.62■□□□□ 0.25
VPS28-215ENST00000531924 LARP6Q9BRS8 491 aaKnown RBP16.62■□□□□ 0.25
VPS28-215ENST00000531924 UPF3BQ9BZI7 483 aaKnown RBP16.62■□□□□ 0.25
VPS28-215ENST00000531924 PDRG1Q9NUG6 133 aa16.62■□□□□ 0.25
VPS28-215ENST00000531924 TTC3P53804 2025 aa16.62■□□□□ 0.25
VPS28-215ENST00000531924 BRWD1Q9NSI6 2320 aa16.61■□□□□ 0.25
VPS28-215ENST00000531924 FAM86C2PA6NEL3 165 aa16.61■□□□□ 0.25
VPS28-215ENST00000531924 HOXA2O43364 376 aa16.61■□□□□ 0.25
VPS28-215ENST00000531924 GPR32O75388 356 aa16.61■□□□□ 0.25
VPS28-215ENST00000531924 CDKL5O76039 1030 aa16.61■□□□□ 0.25
VPS28-215ENST00000531924 CSPP1Q1MSJ5 1256 aa16.61■□□□□ 0.25
VPS28-215ENST00000531924 CTC1Q2NKJ3 1217 aa16.61■□□□□ 0.25
VPS28-215ENST00000531924 FAM102BQ5T8I3 360 aa16.61■□□□□ 0.25
VPS28-215ENST00000531924 GALNT17Q6IS24 598 aa16.61■□□□□ 0.25
VPS28-215ENST00000531924 THNSL1Q8IYQ7 743 aa16.61■□□□□ 0.25
VPS28-215ENST00000531924 KHSRPQ92945 711 aaKnown RBP eCLIP16.61■□□□□ 0.25
VPS28-215ENST00000531924 FAM122AQ96E09 287 aa16.61■□□□□ 0.25
VPS28-215ENST00000531924 POP1Q99575 1024 aaKnown RBP16.61■□□□□ 0.25
VPS28-215ENST00000531924 TM6SF1Q9BZW5 370 aa16.61■□□□□ 0.25
VPS28-215ENST00000531924 UNC45AQ9H3U1 944 aa16.61■□□□□ 0.25
VPS28-215ENST00000531924 TMEM161AQ9NX61 479 aa16.61■□□□□ 0.25
VPS28-215ENST00000531924 SEPT9Q9UHD8 586 aaPredicted RBP16.61■□□□□ 0.25
VPS28-215ENST00000531924 CD207Q9UJ71 328 aa16.61■□□□□ 0.25
VPS28-215ENST00000531924 NLRC5Q86WI3 1866 aa16.61■□□□□ 0.25
VPS28-215ENST00000531924 C9IYK1 514 aa16.6■□□□□ 0.25
VPS28-215ENST00000531924 GPR37L1O60883 481 aa16.6■□□□□ 0.25
VPS28-215ENST00000531924 XBP1P17861 261 aa16.6■□□□□ 0.25
VPS28-215ENST00000531924 EIF4BP23588 611 aaKnown RBP16.6■□□□□ 0.25
VPS28-215ENST00000531924 GTF2F1P35269 517 aaKnown RBP eCLIP16.6■□□□□ 0.25
VPS28-215ENST00000531924 LTBRP36941 435 aa16.6■□□□□ 0.25
VPS28-215ENST00000531924 DNM2P50570 870 aa16.6■□□□□ 0.25
VPS28-215ENST00000531924 UBE3AQ05086 875 aa16.6■□□□□ 0.25
VPS28-215ENST00000531924 Q4G0T1 1027 aa16.6■□□□□ 0.25
VPS28-215ENST00000531924 RBM23Q86U06 439 aaKnown RBP16.6■□□□□ 0.25
VPS28-215ENST00000531924 ADHFE1Q8IWW8 467 aa16.6■□□□□ 0.25
VPS28-215ENST00000531924 FAM177A1Q8N128 213 aaPredicted RBP16.6■□□□□ 0.25
VPS28-215ENST00000531924 RNF169Q8NCN4 708 aa16.6■□□□□ 0.25
VPS28-215ENST00000531924 RDM1Q8NG50 284 aa16.6■□□□□ 0.25
VPS28-215ENST00000531924 NLRP7Q8WX94 980 aa16.6■□□□□ 0.25
VPS28-215ENST00000531924 ELAC1Q9H777 363 aaKnown RBP16.6■□□□□ 0.25
VPS28-215ENST00000531924 TLE6Q9H808 572 aa16.6■□□□□ 0.25
VPS28-215ENST00000531924 TYW1Q9NV66 732 aaKnown RBP16.6■□□□□ 0.25
VPS28-215ENST00000531924 LINC01565O15544 149 aa16.59■□□□□ 0.25
VPS28-215ENST00000531924 ZNF862O60290 1169 aa16.59■□□□□ 0.25
VPS28-215ENST00000531924 MARCH6O60337 910 aa16.59■□□□□ 0.25
VPS28-215ENST00000531924 FGFR1P11362 822 aa16.59■□□□□ 0.25
VPS28-215ENST00000531924 LAG3P18627 525 aa16.59■□□□□ 0.25
VPS28-215ENST00000531924 DNAJB1P25685 340 aa16.59■□□□□ 0.25
VPS28-215ENST00000531924 NRIP1P48552 1158 aa16.59■□□□□ 0.25
VPS28-215ENST00000531924 CDC42EP1Q00587 391 aa16.59■□□□□ 0.25
VPS28-215ENST00000531924 ZP2Q05996 745 aa16.59■□□□□ 0.25
VPS28-215ENST00000531924 DLX2Q07687 328 aaPredicted RBP16.59■□□□□ 0.25
VPS28-215ENST00000531924 ADAM15Q13444 863 aa16.59■□□□□ 0.25
VPS28-215ENST00000531924 SMAD4Q13485 552 aaKnown RBP16.59■□□□□ 0.25
VPS28-215ENST00000531924 CAMK1Q14012 370 aa16.59■□□□□ 0.25
VPS28-215ENST00000531924 NONOQ15233 471 aaKnown RBP eCLIP16.59■□□□□ 0.25
VPS28-215ENST00000531924 KRT25Q7Z3Z0 450 aa16.59■□□□□ 0.25
VPS28-215ENST00000531924 GJA10Q969M2 543 aa16.59■□□□□ 0.25
VPS28-215ENST00000531924 ZNF668Q96K58 619 aaPredicted RBP16.59■□□□□ 0.25
VPS28-215ENST00000531924 SLKQ9H2G2 1235 aaPredicted RBP16.59■□□□□ 0.25
VPS28-215ENST00000531924 DDX25Q9UHL0 483 aaKnown RBP16.59■□□□□ 0.25
VPS28-215ENST00000531924 PUF60Q9UHX1 559 aaKnown RBP16.59■□□□□ 0.25
VPS28-215ENST00000531924 CYP3A7-CYP3A51PA0A087WV96 503 aa16.58■□□□□ 0.24
VPS28-215ENST00000531924 CCDC194A0A1B0GVG4 234 aa16.58■□□□□ 0.24
VPS28-215ENST00000531924 DDX11L8A8MPP1 907 aa16.58■□□□□ 0.24
VPS28-215ENST00000531924 DCXO43602 365 aa16.58■□□□□ 0.24
VPS28-215ENST00000531924 FGF18O76093 207 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms