RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 M0R2C6 588 aa9.22□□□□□ -0.93
SDCBP-208ENST00000520228 CBX4O00257 560 aa9.22□□□□□ -0.93
SDCBP-208ENST00000520228 TRAF5O00463 557 aa9.22□□□□□ -0.93
SDCBP-208ENST00000520228 MAN2B1O00754 1011 aa9.22□□□□□ -0.93
SDCBP-208ENST00000520228 SLC27A2O14975 620 aa9.22□□□□□ -0.93
SDCBP-208ENST00000520228 SRSF3P84103 164 aaKnown RBP9.22□□□□□ -0.93
SDCBP-208ENST00000520228 PCBP1Q15365 356 aaKnown RBP eCLIP9.22□□□□□ -0.93
SDCBP-208ENST00000520228 HHIPL2Q6UWX4 724 aa9.22□□□□□ -0.93
SDCBP-208ENST00000520228 OTOP1Q7RTM1 612 aa9.22□□□□□ -0.93
SDCBP-208ENST00000520228 ARHGEF25Q86VW2 580 aa9.22□□□□□ -0.93
SDCBP-208ENST00000520228 MIB1Q86YT6 1006 aa9.22□□□□□ -0.93
SDCBP-208ENST00000520228 WNK4Q96J92 1243 aa9.22□□□□□ -0.93
SDCBP-208ENST00000520228 BCAS3Q9H6U6 928 aa9.22□□□□□ -0.93
SDCBP-208ENST00000520228 CNTD2Q9H8S5 307 aa9.22□□□□□ -0.93
SDCBP-208ENST00000520228 SRPK3Q9UPE1 567 aa9.22□□□□□ -0.93
SDCBP-208ENST00000520228 CDK12Q9NYV4 1490 aaPredicted RBP9.21□□□□□ -0.93
SDCBP-208ENST00000520228 STAT3P40763 770 aa9.21□□□□□ -0.94
SDCBP-208ENST00000520228 ZNF200P98182 395 aaPredicted RBP9.21□□□□□ -0.94
SDCBP-208ENST00000520228 MESP2Q0VG99 397 aa9.21□□□□□ -0.94
SDCBP-208ENST00000520228 KRT26Q7Z3Y9 468 aa9.21□□□□□ -0.94
SDCBP-208ENST00000520228 PTRH1Q86Y79 214 aaKnown RBP9.21□□□□□ -0.94
SDCBP-208ENST00000520228 AHI1Q8N157 1196 aa9.21□□□□□ -0.94
SDCBP-208ENST00000520228 FBXO15Q8NCQ5 510 aaPredicted RBP9.21□□□□□ -0.94
SDCBP-208ENST00000520228 ARRDC4Q8NCT1 418 aa9.21□□□□□ -0.94
SDCBP-208ENST00000520228 CLEC4DQ8WXI8 215 aa9.21□□□□□ -0.94
SDCBP-208ENST00000520228 COG3Q96JB2 828 aa9.21□□□□□ -0.94
SDCBP-208ENST00000520228 GCM1Q9NP62 436 aa9.21□□□□□ -0.94
SDCBP-208ENST00000520228 AATKQ6ZMQ8 1374 aa9.21□□□□□ -0.94
SDCBP-208ENST00000520228 FYB1O15117 783 aa9.2□□□□□ -0.94
SDCBP-208ENST00000520228 YBX3P16989 372 aaKnown RBP eCLIP9.2□□□□□ -0.94
SDCBP-208ENST00000520228 NEK4P51957 841 aa9.2□□□□□ -0.94
SDCBP-208ENST00000520228 SEPT7Q16181 437 aaKnown RBP9.2□□□□□ -0.94
SDCBP-208ENST00000520228 KCTD1Q719H9 257 aa9.2□□□□□ -0.94
SDCBP-208ENST00000520228 LDHDQ86WU2 507 aa9.2□□□□□ -0.94
SDCBP-208ENST00000520228 KIF18BQ86Y91 864 aa9.2□□□□□ -0.94
SDCBP-208ENST00000520228 RBM12BQ8IXT5 1001 aaKnown RBP9.2□□□□□ -0.94
SDCBP-208ENST00000520228 TTLL11Q8NHH1 800 aa9.2□□□□□ -0.94
SDCBP-208ENST00000520228 PCDHA5Q9Y5H7 936 aa9.2□□□□□ -0.94
SDCBP-208ENST00000520228 SPATA31A5Q5VU36 1347 aa9.2□□□□□ -0.94
SDCBP-208ENST00000520228 SPATA31A7Q8IWB4 1347 aa9.2□□□□□ -0.94
SDCBP-208ENST00000520228 RGS12O14924 1447 aa9.2□□□□□ -0.94
SDCBP-208ENST00000520228 KPNA6O60684 536 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 SEMA7AO75326 666 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 ASGR2P07307 311 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 PMLP29590 882 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 CDR1P51861 262 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 TUSC3Q13454 348 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 FIGNQ5HY92 759 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 PKN3Q6P5Z2 889 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 AMIGO3Q86WK7 504 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 NOSTRINQ8IVI9 506 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 TRIM48Q8IWZ4 208 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 FAM126BQ8IXS8 530 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 NLGN4XQ8N0W4 816 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 CHST14Q8NCH0 376 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 ALG3Q92685 438 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 CD244Q9BZW8 370 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 PANK3Q9H999 370 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 SPC25Q9HBM1 224 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 IFT57Q9NWB7 429 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 B4GALT6Q9UBX8 382 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 NUB1Q9Y5A7 615 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 SLIT3O75094 1523 aa9.19□□□□□ -0.94
SDCBP-208ENST00000520228 LTFP02788 710 aa9.18□□□□□ -0.94
SDCBP-208ENST00000520228 ZBTB48P10074 688 aaPredicted RBP9.18□□□□□ -0.94
SDCBP-208ENST00000520228 KRT15P19012 456 aa9.18□□□□□ -0.94
SDCBP-208ENST00000520228 KIF7Q2M1P5 1343 aa9.18□□□□□ -0.94
SDCBP-208ENST00000520228 SPATA31A1Q5TZJ5 1347 aa9.18□□□□□ -0.94
SDCBP-208ENST00000520228 FSTL4Q6MZW2 842 aa9.18□□□□□ -0.94
SDCBP-208ENST00000520228 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.18□□□□□ -0.94
SDCBP-208ENST00000520228 FILIP1Q7Z7B0 1213 aa9.18□□□□□ -0.94
SDCBP-208ENST00000520228 C2orf69Q8N8R5 385 aa9.18□□□□□ -0.94
SDCBP-208ENST00000520228 CPA5Q8WXQ8 436 aa9.18□□□□□ -0.94
SDCBP-208ENST00000520228 CAAP1Q9H8G2 361 aa9.18□□□□□ -0.94
SDCBP-208ENST00000520228 SIRT5Q9NXA8 310 aa9.18□□□□□ -0.94
SDCBP-208ENST00000520228 OVOS2A0A0J9YW53 1432 aa9.17□□□□□ -0.94
SDCBP-208ENST00000520228 OVOS2Q6IE36 1432 aa9.17□□□□□ -0.94
SDCBP-208ENST00000520228 NSD3Q9BZ95 1437 aa9.17□□□□□ -0.94
SDCBP-208ENST00000520228 CGNL1Q0VF96 1302 aa9.17□□□□□ -0.94
SDCBP-208ENST00000520228 DNAJC6O75061 913 aa9.17□□□□□ -0.94
SDCBP-208ENST00000520228 CLASP2O75122 1294 aaKnown RBP9.17□□□□□ -0.94
SDCBP-208ENST00000520228 ARHGAP44Q17R89 818 aa9.17□□□□□ -0.94
SDCBP-208ENST00000520228 RNF187Q5TA31 235 aaPredicted RBP9.17□□□□□ -0.94
SDCBP-208ENST00000520228 TOM1L2Q6ZVM7 507 aa9.17□□□□□ -0.94
SDCBP-208ENST00000520228 TCP11L2Q8N4U5 519 aa9.17□□□□□ -0.94
SDCBP-208ENST00000520228 RNF38Q9H0F5 515 aa9.17□□□□□ -0.94
SDCBP-208ENST00000520228 HSPBP1Q9NZL4 362 aa9.17□□□□□ -0.94
SDCBP-208ENST00000520228 COL14A1Q05707 1796 aaKnown RBP9.17□□□□□ -0.94
SDCBP-208ENST00000520228 PIK3C2AO00443 1686 aa9.16□□□□□ -0.94
SDCBP-208ENST00000520228 CAMTA1Q9Y6Y1 1673 aa9.16□□□□□ -0.94
SDCBP-208ENST00000520228 NRKQ7Z2Y5 1582 aa9.16□□□□□ -0.94
SDCBP-208ENST00000520228 KCNK3O14649 394 aa9.16□□□□□ -0.94
SDCBP-208ENST00000520228 F2P00734 622 aa9.16□□□□□ -0.94
SDCBP-208ENST00000520228 IGFBP6P24592 240 aaPredicted RBP9.16□□□□□ -0.94
SDCBP-208ENST00000520228 AMPHP49418 695 aa9.16□□□□□ -0.94
SDCBP-208ENST00000520228 DSG1Q02413 1049 aa9.16□□□□□ -0.94
SDCBP-208ENST00000520228 IGDCC3Q8IVU1 814 aa9.16□□□□□ -0.94
SDCBP-208ENST00000520228 MZB1Q8WU39 189 aa9.16□□□□□ -0.94
SDCBP-208ENST00000520228 CHAC2Q8WUX2 184 aa9.16□□□□□ -0.94
SDCBP-208ENST00000520228 FMNL2Q96PY5 1086 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms